Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE11G0056 Ceratophyllum demersum HOM05D003708 ORTHO05D004452 1.2e-200 703.0 352 100.0
CDE05G0123 Ceratophyllum demersum HOM05D003708 ORTHO05D004452 1.9e-174 615.9 342 91.5
Nn1g04897 Nelumbo nucifera HOM05D003708 ORTHO05D004452 5.8e-139 498.0 347 72.0
MBI16_g07876_MAGBIO Magnolia biondii HOM05D003708 ORTHO05D004452 1.3e-138 496.9 351 71.5
Nn5g29691 Nelumbo nucifera HOM05D003708 ORTHO05D004452 2.9e-138 495.7 347 71.8
TAR381G0899 Trochodendron aralioides HOM05D003708 ORTHO05D004452 2.0e-136 489.6 347 71.8
Sopen01g052040 Solanum pennellii HOM05D003708 ORTHO05D004452 6.0e-136 488.0 346 69.9
Nitab4.5_0002169g0050 Nicotiana tabacum HOM05D003708 ORTHO05D004452 1.3e-135 486.9 346 70.8
PGSC0003DMG400000737 Solanum tuberosum HOM05D003708 ORTHO05D004452 1.3e-135 486.9 346 69.7
Solyc01g109850.3 Solanum lycopersicum HOM05D003708 ORTHO05D004452 1.7e-135 486.5 346 69.7
Dinv23495 Davidia involucrata HOM05D003708 ORTHO05D004452 6.6e-135 484.6 352 69.0
PSO384G0323 Papaver somniferum HOM05D003708 ORTHO05D004452 2.5e-134 482.6 338 71.3
PSO339G0466 Papaver somniferum HOM05D003708 ORTHO05D004452 3.3e-134 482.3 350 70.0
MELO3C023315.2 Cucumis melo HOM05D003708 ORTHO05D004452 7.3e-134 481.1 330 72.4
Migut.N01253 Erythranthe guttata HOM05D003708 ORTHO05D004452 2.1e-133 479.6 352 69.3
ClCG11G004220 Citrullus lanatus HOM05D003708 ORTHO05D004452 2.8e-133 479.2 345 70.1
Manes.04G073800 Manihot esculenta HOM05D003708 ORTHO05D004452 2.8e-133 479.2 332 73.5
CsaV3_2G014950 Cucumis sativus L. HOM05D003708 ORTHO05D004452 3.6e-133 478.8 330 71.8
QL11p044193 Quercus lobata HOM05D003708 ORTHO05D004452 3.6e-133 478.8 343 70.8
SGA_v2.0_scaffold5G02835 Striga asiatica HOM05D003708 ORTHO05D004452 3.6e-133 478.8 314 74.5
Haze_02339 Corylus avellana HOM05D003708 ORTHO05D004452 6.2e-133 478.0 347 70.0
Oeu020743.1 Olea europaea HOM05D003708 ORTHO05D004452 1.4e-132 476.9 333 72.1
CAN.G1058.12 Capsicum annuum HOM05D003708 ORTHO05D004452 2.3e-132 476.1 343 69.4
Cfa011043 Carpinus fangiana HOM05D003708 ORTHO05D004452 3.1e-132 475.7 347 70.3
CiPaw.06G133600 Carya illinoinensis HOM05D003708 ORTHO05D004452 3.1e-132 475.7 347 68.3
Rhsim01G0265100 Rhododendron simsii HOM05D003708 ORTHO05D004452 4.0e-132 475.3 353 68.0
Sed0019329 Sechium edule HOM05D003708 ORTHO05D004452 4.0e-132 475.3 344 69.2
Lj5A195T74 Lonicera japonica HOM05D003708 ORTHO05D004452 6.8e-132 474.6 349 69.9
FAN15G1456 Fragaria x ananassa HOM05D003708 ORTHO05D004452 8.9e-132 474.2 341 69.8
FAN24G3295 Fragaria x ananassa HOM05D003708 ORTHO05D004452 1.2e-131 473.8 341 70.1
Lsat_1_v5_gn_7_90480 Lactuca sativa HOM05D003708 ORTHO05D004452 1.2e-131 473.8 346 68.2
Potri.009G119300 Populus trichocarpa HOM05D003708 ORTHO05D004452 1.2e-131 473.8 352 69.9
Thecc.02G081300 Theobroma cacao HOM05D003708 ORTHO05D004452 1.5e-131 473.4 352 70.7
Duzib248G1007 Durio zibethinus HOM05D003708 ORTHO05D004452 2.0e-131 473.0 352 70.2
Gohir.A13G033200 Gossypium hirsutum HOM05D003708 ORTHO05D004452 2.6e-131 472.6 310 76.5
Gohir.D13G031100 Gossypium hirsutum HOM05D003708 ORTHO05D004452 2.6e-131 472.6 310 76.1
Peaxi162Scf00684g00224 Petunia axillaris HOM05D003708 ORTHO05D004452 2.6e-131 472.6 347 68.6
Sabra09G0091800 Salix brachista HOM05D003708 ORTHO05D004452 2.6e-131 472.6 353 68.6
Hund06256 Selenicereus undatus HOM05D003708 ORTHO05D004452 2.6e-131 472.6 349 69.1
Lalb_Chr02g0156131 Lupinus albus HOM05D003708 ORTHO05D004452 3.4e-131 472.2 352 67.9
Atru.chr5.3061 Acer truncatum HOM05D003708 ORTHO05D004452 5.8e-131 471.5 343 69.4
AT5G11880 Arabidopsis thaliana HOM05D003708 ORTHO05D004452 5.8e-131 471.5 317 74.4
Gorai.008G030100 Gossypium raimondii HOM05D003708 ORTHO05D004452 7.5e-131 471.1 353 69.4
Gorai.013G035500 Gossypium raimondii HOM05D003708 ORTHO05D004452 7.5e-131 471.1 341 71.8
RcHm_v2.0_Chr6g0265651 Rosa chinensis HOM05D003708 ORTHO05D004452 7.5e-131 471.1 347 68.3
Sed0010943 Sechium edule HOM05D003708 ORTHO05D004452 7.5e-131 471.1 347 68.9
ATR0585G004 Amborella trichopoda HOM05D003708 ORTHO05D004452 9.8e-131 470.7 343 71.1
FvH4_2g09380 Fragaria vesca HOM05D003708 ORTHO05D004452 9.8e-131 470.7 341 69.8
Gohir.D12G029400 Gossypium hirsutum HOM05D003708 ORTHO05D004452 9.8e-131 470.7 353 69.4
FAN27G1867 Fragaria x ananassa HOM05D003708 ORTHO05D004452 1.7e-130 469.9 341 69.2
Sc08g0000610 Simmondsia chinensis HOM05D003708 ORTHO05D004452 1.7e-130 469.9 315 73.7
AUR62011292 Chenopodium quinoa HOM05D003708 ORTHO05D004452 2.2e-130 469.5 312 72.8
AL3G26740 Arabidopsis lyrata HOM05D003708 ORTHO05D004452 2.9e-130 469.2 319 73.4
AL6G22640 Arabidopsis lyrata HOM05D003708 ORTHO05D004452 4.9e-130 468.4 313 73.5
EL10Ac9g21697 Beta vulgaris HOM05D003708 ORTHO05D004452 4.9e-130 468.4 336 69.0
CANSAT56G4510 Cannabis sativa HOM05D003708 ORTHO05D004452 4.9e-130 468.4 316 72.5
CANSAT56G1534 Cannabis sativa HOM05D003708 ORTHO05D004452 6.4e-130 468.0 316 72.2
AUR62016767 Chenopodium quinoa HOM05D003708 ORTHO05D004452 6.4e-130 468.0 312 72.4
THA.LOC104799162 Tarenaya hassleriana HOM05D003708 ORTHO05D004452 6.4e-130 468.0 322 73.0
MSTRG.5405 Avicennia marina HOM05D003708 ORTHO05D004452 8.3e-130 467.6 329 69.3
Carub.0001s3063 Capsella rubella HOM05D003708 ORTHO05D004452 8.3e-130 467.6 323 72.8
Thhalv10013369m.g Eutrema salsugineum HOM05D003708 ORTHO05D004452 8.3e-130 467.6 323 72.4
AT3G14390 Arabidopsis thaliana HOM05D003708 ORTHO05D004452 1.1e-129 467.2 313 74.1
Carub.0006s1041 Capsella rubella HOM05D003708 ORTHO05D004452 1.4e-129 466.8 323 71.5
COL.COLO4_25976 Corchorus olitorius HOM05D003708 ORTHO05D004452 1.9e-129 466.5 353 69.4
MD10G1070600 Malus domestica HOM05D003708 ORTHO05D004452 1.9e-129 466.5 349 68.8
TWI79G1570 Tripterygium wilfordii HOM05D003708 ORTHO05D004452 1.9e-129 466.5 348 69.3
Glyma.13G140700 Glycine max HOM05D003708 ORTHO05D004452 2.4e-129 466.1 353 66.3
CSS0012852 Camellia sinensis var. sinensis HOM05D003708 ORTHO05D004452 3.2e-129 465.7 333 70.3
TWI31G0810 Tripterygium wilfordii HOM05D003708 ORTHO05D004452 3.2e-129 465.7 344 68.9
C09p64980 Brassica napus HOM05D003708 ORTHO05D004452 4.1e-129 465.3 308 74.0
BolC9t59326H Brassica oleracea HOM05D003708 ORTHO05D004452 4.1e-129 465.3 308 74.0
vmacro02084 Vaccinium macrocarpon HOM05D003708 ORTHO05D004452 4.1e-129 465.3 390 62.8
A10p25890 Brassica napus HOM05D003708 ORTHO05D004452 5.4e-129 464.9 308 73.7
BraA10t44652Z Brassica rapa HOM05D003708 ORTHO05D004452 7.1e-129 464.5 308 73.7
FAN20G3010 Fragaria x ananassa HOM05D003708 ORTHO05D004452 9.2e-129 464.2 351 67.5
arahy.Tifrunner.gnm1.ann1.U6BYIQ Arachis hypogaea HOM05D003708 ORTHO05D004452 1.6e-128 463.4 352 67.3
Rhsim11G0179400 Rhododendron simsii HOM05D003708 ORTHO05D004452 1.6e-128 463.4 394 60.7
A03p05250 Brassica napus HOM05D003708 ORTHO05D004452 2.1e-128 463.0 324 70.4
BraA03t09864Z Brassica rapa HOM05D003708 ORTHO05D004452 3.5e-128 462.2 324 70.4
Potri.004G157500 Populus trichocarpa HOM05D003708 ORTHO05D004452 3.5e-128 462.2 353 67.1
Sp6g31720 Schrenkiella parvula HOM05D003708 ORTHO05D004452 3.5e-128 462.2 324 71.9
Prupe.8G092300 Prunus persica HOM05D003708 ORTHO05D004452 4.6e-128 461.8 342 67.5
VMungo1383G2129 Vigna mungo HOM05D003708 ORTHO05D004452 4.6e-128 461.8 304 73.4
arahy.Tifrunner.gnm1.ann1.F2CJ1Q Arachis hypogaea HOM05D003708 ORTHO05D004452 6.0e-128 461.5 352 67.3
Glyma.19G182000 Glycine max HOM05D003708 ORTHO05D004452 6.0e-128 461.5 357 66.1
MD05G1063100 Malus domestica HOM05D003708 ORTHO05D004452 6.0e-128 461.5 338 68.9
PGR042G2933 Punica granatum HOM05D003708 ORTHO05D004452 6.0e-128 461.5 355 67.0
Dinv42045 Davidia involucrata HOM05D003708 ORTHO05D004452 7.8e-128 461.1 334 67.7
BcaB01g05447 Brassica carinata HOM05D003708 ORTHO05D004452 1.3e-127 460.3 313 72.5
BolC3t13114H Brassica oleracea HOM05D003708 ORTHO05D004452 1.3e-127 460.3 324 69.8
CARHR201280 Cardamine hirsuta HOM05D003708 ORTHO05D004452 1.3e-127 460.3 322 71.4
CSS0011384 Camellia sinensis var. sinensis HOM05D003708 ORTHO05D004452 1.7e-127 459.9 333 69.4
Glyma.03G181200 Glycine max HOM05D003708 ORTHO05D004452 2.3e-127 459.5 353 65.7
QL11p044250 Quercus lobata HOM05D003708 ORTHO05D004452 3.0e-127 459.1 338 68.6
unitig_8.g4754 Utricularia gibba HOM05D003708 ORTHO05D004452 3.0e-127 459.1 315 72.7
CSS0004507 Camellia sinensis var. sinensis HOM05D003708 ORTHO05D004452 3.9e-127 458.8 335 69.9
Eucgr.G01640 Eucalyptus grandis HOM05D003708 ORTHO05D004452 6.6e-127 458.0 324 70.7
HanXRQChr04g0127831 Helianthus annuus HOM05D003708 ORTHO05D004452 6.6e-127 458.0 329 69.9
Haze_02345 Corylus avellana HOM05D003708 ORTHO05D004452 8.6e-127 457.6 387 62.8
Haze_24305 Corylus avellana HOM05D003708 ORTHO05D004452 8.6e-127 457.6 392 62.2
Lj1g0019257 Lotus japonicus HOM05D003708 ORTHO05D004452 8.6e-127 457.6 315 71.1
BcaB01g05446 Brassica carinata HOM05D003708 ORTHO05D004452 1.5e-126 456.8 324 69.4
Phvul.001G177300 Phaseolus vulgaris HOM05D003708 ORTHO05D004452 2.5e-126 456.1 352 65.1
C03p06040 Brassica napus HOM05D003708 ORTHO05D004452 5.6e-126 454.9 324 69.1
Nitab4.5_0008925g0010 Nicotiana tabacum HOM05D003708 ORTHO05D004452 9.5e-126 454.1 291 74.6
Aa31LG3G15320 Aethionema arabicum HOM05D003708 ORTHO05D004452 1.2e-125 453.8 323 71.2
Ah.01g019180 Amaranthus hybridus HOM05D003708 ORTHO05D004452 1.2e-125 453.8 390 61.5
Ca_24926_v3 Cicer arietinum L. HOM05D003708 ORTHO05D004452 1.2e-125 453.8 340 67.4
Psat2g152880 Pisum sativum HOM05D003708 ORTHO05D004452 1.6e-125 453.4 290 75.2
Lj9C375G10 Lonicera japonica HOM05D002765 ORTHO05D003083 1.8e-124 449.9 333 67.3
Lalb_Chr20g0112711 Lupinus albus HOM05D003708 ORTHO05D004452 6.8e-124 448.0 290 73.1
Medtr5g022700 Medicago truncatula HOM05D003708 ORTHO05D004452 1.5e-123 446.8 313 70.0
Aqoxy3G00171 Aquilegia oxysepala HOM05D003708 ORTHO05D004452 2.6e-123 446.0 320 70.3
Actinidia00541 Actinidia chinensis HOM05D003708 ORTHO05D004452 9.9e-123 444.1 331 67.4
Os02g0440000 Oryza sativa ssp. japonica HOM05D003708 ORTHO05D004452 4.9e-122 441.8 286 74.5
BcaC04g19189 Brassica carinata HOM05D003708 ORTHO05D004452 4.1e-121 438.7 307 72.6
DCAR_009121 Daucus carota HOM05D003708 ORTHO05D004452 4.1e-121 438.7 330 68.8
HPP92_001592 Vanilla planifolia HOM05D003708 ORTHO05D004452 4.1e-121 438.7 309 69.6
Zm00001eb406820 Zea mays HOM05D003708 ORTHO05D004452 7.8e-120 434.5 286 73.1
GSVIVG01023813001 Vitis vinifera HOM05D003708 ORTHO05D004452 1.3e-119 433.7 264 80.3
Zm00001eb164230 Zea mays HOM05D003708 ORTHO05D004452 2.3e-119 433.0 286 73.1
TAR628G0623 Trochodendron aralioides HOM05D003708 ORTHO05D004452 1.1e-118 430.6 344 65.7
GSVIVG01034280001 Vitis vinifera HOM05D003708 ORTHO05D004452 1.9e-118 429.9 264 79.5
Cc02_g17290 Coffea canephora HOM05D003708 ORTHO05D004452 4.7e-117 425.2 264 78.8
Ah.01g006350 Amaranthus hybridus HOM05D003708 ORTHO05D004452 4.6e-112 408.7 355 60.8
ECA236G4291 Erigeron canadensis HOM05D003708 ORTHO05D004452 1.5e-110 403.7 261 76.2
Oeu029157.1 Olea europaea HOM05D003708 ORTHO05D004452 1.9e-110 403.3 349 62.2
ECA246G0885 Erigeron canadensis HOM05D003708 ORTHO05D004452 1.1e-108 397.5 255 76.9
SMO301G0021 Selaginella moellendorffii HOM05D003708 ORTHO05D004452 1.5e-107 393.7 296 65.9
Peaxi162Scf00016g00522 Petunia axillaris HOM05D003708 ORTHO05D004452 2.9e-106 389.4 337 60.2
Pp3c24_7340 Physcomitrium patens HOM05D003708 ORTHO05D004452 3.5e-104 382.5 288 65.6
Pp3c24_7341 Physcomitrium patens HOM05D003708 ORTHO05D004452 3.5e-104 382.5 288 65.6
Gohir.A12G043000 Gossypium hirsutum HOM05D003708 ORTHO05D004452 6.0e-104 381.7 340 61.5
Ciclev10028284m.g Citrus clementina HOM05D003708 ORTHO05D004452 8.1e-101 371.3 365 56.7
Pp3c23_16600 Physcomitrium patens HOM05D003708 ORTHO05D004452 4.5e-99 365.5 287 63.1
Mapoly0005s0182 Marchantia polymorpha HOM05D003708 ORTHO05D004452 5.8e-99 365.2 310 60.6
CBR_g46280 Chara braunii HOM05D003708 ORTHO05D004452 1.9e-97 360.1 264 65.9
AagrBONN_evm.TU.Sc2ySwM_228.2627 Anthoceros agrestis HOM05D003708 ORTHO05D004452 6.7e-95 351.7 295 60.7
TAR628G0633 Trochodendron aralioides HOM05D003708 ORTHO05D004452 2.6e-83 313.2 357 50.7
Lj6C687T4 Lonicera japonica HOM05D003708 ORTHO05D004452 3.4e-83 312.8 239 64.0
Cre01.g050100 Chlamydomonas reinhardtii HOM05D003708 ORTHO05D004452 5.9e-83 312.0 273 56.0
Hund00244 Selenicereus undatus HOM05D003708 ORTHO05D004452 6.7e-79 298.5 365 49.9
TPR.G10514 Trifolium pratense HOM05D003708 ORTHO05D004452 5.0e-74 282.3 187 72.7
Cpa.g.sc106.11 Carica papaya HOM05D003708 ORTHO05D004452 8.5e-74 281.6 218 65.1
CSS0015853 Camellia sinensis var. sinensis HOM05D003708 ORTHO05D004452 2.5e-70 270.0 236 60.2
CSS0044853 Camellia sinensis var. sinensis HOM05D003708 ORTHO05D004452 3.2e-65 253.1 237 58.2
TAR383G0428 Trochodendron aralioides HOM05D003708 ORTHO05D004452 8.0e-56 221.9 257 50.6
Lj3C650T5 Lonicera japonica HOM05D003708 ORTHO05D004452 8.2e-53 211.8 162 64.8
Cc00_g28580 Coffea canephora HOM05D003708 ORTHO05D004452 1.3e-50 204.5 145 67.6
Lj3C651T3 Lonicera japonica HOM05D003708 ORTHO05D004452 8.8e-47 191.8 145 64.1
Cpa.g.sc106.13 Carica papaya HOM05D003708 ORTHO05D004452 1.4e-44 184.5 129 69.0
SEGI_12812 Sequoiadendron giganteum HOM05D003708 ORTHO05D004452 4.5e-43 179.5 97 84.5
SEGI_39868 Sequoiadendron giganteum HOM05D003708 ORTHO05D004452 2.9e-42 176.8 97 83.5
TPR.G8954 Trifolium pratense HOM05D003708 ORTHO05D004452 8.5e-42 175.3 103 78.6
GSVIVG01029866001 Vitis vinifera HOM05D003708 ORTHO05D004452 2.3e-39 167.2 164 55.5
vmacro02085 Vaccinium macrocarpon HOM05D001037 ORTHO05D000888 8.3e-37 158.7 189 52.4
Eucgr.D02438 Eucalyptus grandis HOM05D003708 ORTHO05D004452 7.0e-36 155.6 79 91.1
Duzib268G1397 Durio zibethinus HOM05D003708 ORTHO05D004452 2.3e-34 150.6 118 62.7
SEGI_18999 Sequoiadendron giganteum HOM05D003708 ORTHO05D004452 2.1e-32 144.1 100 64.0
Glyma.10G053602 Glycine max HOM05D003708 ORTHO05D004452 7.5e-30 135.6 99 65.7
TAR381G0003 Trochodendron aralioides HOM05D003708 ORTHO05D004452 9.8e-30 135.2 108 65.7
TAR636G0705 Trochodendron aralioides HOM05D003708 ORTHO05D004452 7.0e-28 129.0 78 80.8
vmacro02086 Vaccinium macrocarpon HOM05D001037 ORTHO05D000888 1.3e-26 124.8 282 36.9
SEGI_14006 Sequoiadendron giganteum HOM05D003708 ORTHO05D004452 3.0e-26 123.6 74 81.1
SEGI_30541 Sequoiadendron giganteum HOM05D003708 ORTHO05D004452 2.9e-21 107.1 64 79.7
SEGI_13472 Sequoiadendron giganteum HOM05D003708 ORTHO05D004452 6.4e-21 105.9 68 75.0
arahy.Tifrunner.gnm1.ann1.EPLA3D Arachis hypogaea HOM05D003708 ORTHO05D004452 1.6e-19 101.3 80 62.5
TAR628G1665 Trochodendron aralioides HOM05D003708 ORTHO05D004452 3.0e-18 97.1 132 45.5
TAR628G0529 Trochodendron aralioides HOM05D003708 ORTHO05D004452 5.0e-18 96.3 142 43.0
BcaC04g19188 Brassica carinata HOM05D003708 ORTHO05D004452 8.6e-18 95.5 91 56.0
CANSAT25G3134 Cannabis sativa HOM05D003708 ORTHO05D004452 7.5e-14 82.4 99 48.5
VMungo0720G2093 Vigna mungo HOM05D003708 ORTHO05D004452 3.7e-13 80.1 49 73.5
Cre16.g675900 Chlamydomonas reinhardtii HOM05D003708 ORTHO05D145447 8.6e-10 68.9 164 34.1
BcaB01g05444 Brassica carinata HOM05D003708 ORTHO05D004452 9.5e-09 65.5 79 45.6
Peaxi162Scf00171g10044 Petunia axillaris HOM05D004078 ORTHO05D004823 1.2e-08 65.1 268 25.0
ClCG08G013990 Citrullus lanatus HOM05D004078 ORTHO05D004823 1.6e-08 64.7 170 29.4
Medtr5g022680 Medicago truncatula HOM05D003708 ORTHO05D004452 1.8e-07 61.2 52 51.9
CSS0037182 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 4.0e-07 60.1 270 23.3
CSS0003326 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 5.2e-07 59.7 270 23.3
SEGI_03953 Sequoiadendron giganteum HOM05D004078 ORTHO05D004823 5.2e-07 59.7 264 24.2
SEGI_37656 Sequoiadendron giganteum HOM05D004078 ORTHO05D004823 5.2e-07 59.7 264 24.2
MSTRG.1142 Avicennia marina HOM05D004078 ORTHO05D004823 2.0e-06 57.8 235 26.0
Zm00001eb331690 Zea mays HOM05D004078 ORTHO05D004823 3.4e-06 57.0 258 23.6


User provided reference genes

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