Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE09G0896 Ceratophyllum demersum HOM05D004365 ORTHO05D005123 8.1e-66 253.4 115 100.0
CDE02G0371 Ceratophyllum demersum HOM05D004365 ORTHO05D005123 1.1e-65 253.1 115 99.1
Sed0001961 Sechium edule HOM05D004365 ORTHO05D005123 8.4e-63 243.4 115 93.0
Nn4g25611 Nelumbo nucifera HOM05D004365 ORTHO05D005123 1.4e-62 242.7 115 92.2
CANSAT54G2312 Cannabis sativa HOM05D004365 ORTHO05D005123 1.9e-62 242.3 115 92.2
Sed0006030 Sechium edule HOM05D004365 ORTHO05D005123 2.4e-62 241.9 115 92.2
PSO761G0124 Papaver somniferum HOM05D004365 ORTHO05D005123 3.2e-62 241.5 115 92.2
ClCG05G006460 Citrullus lanatus HOM05D004365 ORTHO05D005123 4.1e-62 241.1 115 91.3
DCAR_023347 Daucus carota HOM05D004365 ORTHO05D005123 4.1e-62 241.1 115 91.3
CiPaw.01G139700 Carya illinoinensis HOM05D004365 ORTHO05D005123 5.4e-62 240.7 115 91.3
Aqoxy2G02775 Aquilegia oxysepala HOM05D004365 ORTHO05D005123 7.1e-62 240.4 115 91.3
HanXRQChr05g0145921 Helianthus annuus HOM05D004365 ORTHO05D005123 7.1e-62 240.4 115 91.3
PSO210G6722 Papaver somniferum HOM05D004365 ORTHO05D005123 1.2e-61 239.6 115 91.3
TAR365G0998 Trochodendron aralioides HOM05D004365 ORTHO05D005123 1.2e-61 239.6 115 89.6
Ah.13g072000 Amaranthus hybridus HOM05D004365 ORTHO05D005123 1.6e-61 239.2 115 89.6
Haze_01277 Corylus avellana HOM05D004365 ORTHO05D005123 1.6e-61 239.2 115 90.4
ECA246G3323 Erigeron canadensis HOM05D004365 ORTHO05D005123 1.6e-61 239.2 115 90.4
QL06p011635 Quercus lobata HOM05D004365 ORTHO05D005123 1.6e-61 239.2 114 90.4
Prupe.1G122000 Prunus persica HOM05D004365 ORTHO05D005123 2.1e-61 238.8 115 91.3
GSVIVG01035016001 Vitis vinifera HOM05D004365 ORTHO05D005123 2.1e-61 238.8 115 90.4
CSS0008168 Camellia sinensis var. sinensis HOM05D004365 ORTHO05D005123 2.7e-61 238.4 115 90.4
MSTRG.21775 Avicennia marina HOM05D004365 ORTHO05D005123 3.5e-61 238.0 115 91.3
Hma1.2p1_0013F.1_g008720 Hydrangea macrophylla HOM05D004365 ORTHO05D005123 3.5e-61 238.0 115 89.6
RcHm_v2.0_Chr4g0424591 Rosa chinensis HOM05D004365 ORTHO05D005123 3.5e-61 238.0 115 91.3
Sc05g0009630 Simmondsia chinensis HOM05D004365 ORTHO05D005123 4.6e-61 237.7 115 89.6
FvH4_4g19480 Fragaria vesca HOM05D004365 ORTHO05D005123 6.0e-61 237.3 115 91.3
FAN07G2773 Fragaria x ananassa HOM05D004365 ORTHO05D005123 6.0e-61 237.3 115 91.3
Lsat_1_v5_gn_6_116841 Lactuca sativa HOM05D004365 ORTHO05D005123 6.0e-61 237.3 115 88.7
HPP92_002026 Vanilla planifolia HOM05D004365 ORTHO05D005123 6.0e-61 237.3 115 89.6
Actinidia13364 Actinidia chinensis HOM05D004365 ORTHO05D005123 7.8e-61 236.9 115 89.6
Oeu016485.1 Olea europaea HOM05D004365 ORTHO05D005123 7.8e-61 236.9 115 89.6
PGR004G2507 Punica granatum HOM05D004365 ORTHO05D005123 7.8e-61 236.9 115 90.4
Lalb_Chr18g0058831 Lupinus albus HOM05D004365 ORTHO05D005123 1.0e-60 236.5 115 89.6
Ciclev10006256m.g Citrus clementina HOM05D004365 ORTHO05D005123 2.3e-60 235.3 115 87.8
MD16G1157100 Malus domestica HOM05D004365 ORTHO05D005123 2.3e-60 235.3 115 90.4
MD13G1156200 Malus domestica HOM05D004365 ORTHO05D005123 3.0e-60 235.0 115 90.4
Lj6g0010863 Lotus japonicus HOM05D004365 ORTHO05D005123 3.9e-60 234.6 115 89.6
Phvul.009G256100 Phaseolus vulgaris HOM05D004365 ORTHO05D005123 5.1e-60 234.2 115 88.7
Cc03_g00970 Coffea canephora HOM05D004365 ORTHO05D005123 6.6e-60 233.8 115 88.7
Glyma.09G037400 Glycine max HOM05D004365 ORTHO05D005123 6.6e-60 233.8 115 88.7
Thecc.04G297700 Theobroma cacao HOM05D004365 ORTHO05D005123 6.6e-60 233.8 115 88.7
unitig_22.g6354 Utricularia gibba HOM05D004365 ORTHO05D005123 6.6e-60 233.8 115 87.8
Eucgr.H02666 Eucalyptus grandis HOM05D004365 ORTHO05D005123 8.6e-60 233.4 115 88.7
Gohir.A01G034300 Gossypium hirsutum HOM05D004365 ORTHO05D005123 8.6e-60 233.4 115 88.7
Gohir.D01G023535 Gossypium hirsutum HOM05D004365 ORTHO05D005123 8.6e-60 233.4 115 88.7
Gorai.002G030000 Gossypium raimondii HOM05D004365 ORTHO05D005123 8.6e-60 233.4 115 88.7
Medtr2g034520 Medicago truncatula HOM05D004365 ORTHO05D005123 8.6e-60 233.4 115 88.7
Psat6g078760 Pisum sativum HOM05D004365 ORTHO05D005123 8.6e-60 233.4 115 89.6
Ca_01870_v3 Cicer arietinum L. HOM05D004365 ORTHO05D005123 1.1e-59 233.0 115 88.7
SEGI_37796 Sequoiadendron giganteum HOM05D004365 ORTHO05D005123 1.1e-59 233.0 115 87.0
TWI73G0828 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 1.1e-59 233.0 115 87.0
Manes.15G005400 Manihot esculenta HOM05D004365 ORTHO05D005123 1.5e-59 232.6 115 86.1
Nitab4.5_0000647g0090 Nicotiana tabacum HOM05D004365 ORTHO05D005123 1.5e-59 232.6 115 87.8
Peaxi162Scf00164g01133 Petunia axillaris HOM05D004365 ORTHO05D005123 1.5e-59 232.6 115 87.8
Solyc05g053430.3 Solanum lycopersicum HOM05D004365 ORTHO05D005123 1.5e-59 232.6 115 87.8
Sopen05g031930 Solanum pennellii HOM05D004365 ORTHO05D005123 1.5e-59 232.6 115 87.8
PGSC0003DMG400027213 Solanum tuberosum HOM05D004365 ORTHO05D005123 1.5e-59 232.6 115 87.8
Duzib052G0793 Durio zibethinus HOM05D004365 ORTHO05D005123 2.5e-59 231.9 115 87.8
TPR.G5757 Trifolium pratense HOM05D004365 ORTHO05D005123 3.3e-59 231.5 115 87.8
THA.LOC104820300 Tarenaya hassleriana HOM05D004365 ORTHO05D005123 5.6e-59 230.7 115 87.0
SMO174G0170 Selaginella moellendorffii HOM05D004365 ORTHO05D005123 7.3e-59 230.3 114 85.1
AL3G29960 Arabidopsis lyrata HOM05D004365 ORTHO05D005123 1.2e-58 229.6 115 87.0
Cpa.g.sc9.86 Carica papaya HOM05D004365 ORTHO05D005123 1.2e-58 229.6 115 86.1
Glyma.15G142700 Glycine max HOM05D004365 ORTHO05D005123 1.2e-58 229.6 115 87.8
Aa31LG8G4020 Aethionema arabicum HOM05D004365 ORTHO05D005123 1.6e-58 229.2 115 86.1
BcaC09g50324 Brassica carinata HOM05D004365 ORTHO05D005123 1.6e-58 229.2 115 86.1
BcaNung00211 Brassica carinata HOM05D004365 ORTHO05D005123 1.6e-58 229.2 115 86.1
A01p21300 Brassica napus HOM05D004365 ORTHO05D005123 1.6e-58 229.2 115 86.1
Carub.0003s1673 Capsella rubella HOM05D004365 ORTHO05D005123 2.1e-58 228.8 115 87.0
Thhalv10021989m.g Eutrema salsugineum HOM05D004365 ORTHO05D005123 2.1e-58 228.8 115 86.1
Dinv44302 Davidia involucrata HOM05D004365 ORTHO05D005123 2.8e-58 228.4 115 87.0
Duzib212G0477 Durio zibethinus HOM05D004365 ORTHO05D005123 3.6e-58 228.0 115 86.1
AT3G16980 Arabidopsis thaliana HOM05D004365 ORTHO05D005123 4.7e-58 227.6 115 86.1
vmacro15189 Vaccinium macrocarpon HOM05D004365 ORTHO05D005123 6.2e-58 227.3 135 77.8
AL7G38770 Arabidopsis lyrata HOM05D004365 ORTHO05D005123 8.1e-58 226.9 115 85.2
AT4G16265 Arabidopsis thaliana HOM05D004365 ORTHO05D005123 8.1e-58 226.9 115 85.2
Carub.0007s2525 Capsella rubella HOM05D004365 ORTHO05D005123 8.1e-58 226.9 115 85.2
Sabra08G0080800 Salix brachista HOM05D004365 ORTHO05D005123 8.1e-58 226.9 115 83.5
Sabra10G0110500 Salix brachista HOM05D004365 ORTHO05D005123 1.1e-57 226.5 115 84.3
BcaB08g34342 Brassica carinata HOM05D004365 ORTHO05D005123 1.4e-57 226.1 115 84.3
BcaC07g37975 Brassica carinata HOM05D004365 ORTHO05D005123 1.4e-57 226.1 115 84.3
A08p12300 Brassica napus HOM05D004365 ORTHO05D005123 1.4e-57 226.1 115 84.3
BolC8t48354H Brassica oleracea HOM05D004365 ORTHO05D005123 1.4e-57 226.1 115 84.3
Mapoly0028s0097 Marchantia polymorpha HOM05D004365 ORTHO05D005123 1.4e-57 226.1 115 84.3
Potri.008G106900 Populus trichocarpa HOM05D004365 ORTHO05D005123 1.8e-57 225.7 115 82.6
SMO364G0316 Selaginella moellendorffii HOM05D004365 ORTHO05D005123 1.8e-57 225.7 115 83.5
Zm00001eb088460 Zea mays HOM05D004365 ORTHO05D005123 2.4e-57 225.3 115 82.6
Thhalv10026603m.g Eutrema salsugineum HOM05D004365 ORTHO05D005123 3.1e-57 224.9 115 84.3
CARHR222650 Cardamine hirsuta HOM05D004365 ORTHO05D005123 4.0e-57 224.6 115 85.2
Pp3c18_17910 Physcomitrium patens HOM05D004365 ORTHO05D005123 4.0e-57 224.6 115 84.3
CARHR092230 Cardamine hirsuta HOM05D004365 ORTHO05D005123 1.5e-56 222.6 115 85.2
Nitab4.5_0006365g0010 Nicotiana tabacum HOM05D004365 ORTHO05D005123 4.4e-56 221.1 134 75.4
TWI09G0163 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 9.9e-56 219.9 115 82.6
arahy.Tifrunner.gnm1.ann1.79Y4XM Arachis hypogaea HOM05D004365 ORTHO05D005123 6.4e-55 217.2 112 84.8
arahy.Tifrunner.gnm1.ann1.C4ZZV2 Arachis hypogaea HOM05D004365 ORTHO05D005123 6.4e-55 217.2 112 84.8
Hund03115 Selenicereus undatus HOM05D004365 ORTHO05D005123 1.1e-54 216.5 105 89.5
Hund11961 Selenicereus undatus HOM05D004365 ORTHO05D005123 1.1e-54 216.5 105 89.5
Migut.N00047 Erythranthe guttata HOM05D004365 ORTHO05D005123 4.2e-54 214.5 105 88.6
Os03g0102200 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 2.1e-53 212.2 115 78.3
EL10Ac3g05464 Beta vulgaris HOM05D004365 ORTHO05D005123 6.0e-53 210.7 115 80.0
Os12g0560400 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 3.9e-52 208.0 105 84.8
A09p28560 Brassica napus HOM05D004365 ORTHO05D005123 6.6e-52 207.2 113 78.8
BraA09t38417Z Brassica rapa HOM05D004365 ORTHO05D005123 6.6e-52 207.2 113 78.8
BolC1t02605H Brassica oleracea HOM05D004365 ORTHO05D005123 8.7e-52 206.8 105 84.8
Lalb_Chr08g0234431 Lupinus albus HOM05D004365 ORTHO05D005123 1.5e-51 206.1 112 81.2
arahy.Tifrunner.gnm1.ann1.MX4EIU Arachis hypogaea HOM05D004365 ORTHO05D005123 1.9e-51 205.7 114 76.3
SpUn0413_0020 Schrenkiella parvula HOM05D004365 ORTHO05D005123 4.3e-51 204.5 105 83.8
BraA08t33228Z Brassica rapa HOM05D004365 ORTHO05D005123 7.3e-51 203.8 105 82.9
SalBow2G2782 Salvia bowleyana HOM05D004365 ORTHO05D005123 9.6e-51 203.4 128 74.2
Glyma.07G241200 Glycine max HOM05D004365 ORTHO05D005123 1.3e-50 203.0 115 74.8
HPP92_005120 Vanilla planifolia HOM05D004365 ORTHO05D005123 3.6e-50 201.4 114 73.7
Manes.03G202800 Manihot esculenta HOM05D004365 ORTHO05D005123 1.8e-49 199.1 115 74.8
BcaC04g21057 Brassica carinata HOM05D004365 ORTHO05D005123 4.0e-49 198.0 112 75.0
C09p36150 Brassica napus HOM05D004365 ORTHO05D005123 5.3e-49 197.6 112 75.0
BolC9t56454H Brassica oleracea HOM05D004365 ORTHO05D005123 5.3e-49 197.6 112 75.0
Lj4g0028172 Lotus japonicus HOM05D004365 ORTHO05D005123 5.3e-49 197.6 115 74.8
Dinv15193 Davidia involucrata HOM05D004365 ORTHO05D005123 9.0e-49 196.8 98 89.8
Phvul.003G112600 Phaseolus vulgaris HOM05D004365 ORTHO05D005123 1.2e-48 196.4 115 73.0
Sp7g14780 Schrenkiella parvula HOM05D004365 ORTHO05D005123 1.9e-46 189.1 130 66.9
TWI53G1753 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 1.9e-46 189.1 114 69.3
VMungo1215G2752 Vigna mungo HOM05D004365 ORTHO05D005123 2.1e-45 185.7 115 69.6
TWI53G0542 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 1.0e-44 183.3 114 67.5
Mapoly0087s0071 Marchantia polymorpha HOM05D004365 ORTHO05D005123 1.1e-43 179.9 115 67.0
DCAR_027008 Daucus carota HOM05D004365 ORTHO05D005123 2.5e-43 178.7 180 51.7
ATR0665G356 Amborella trichopoda HOM05D004365 ORTHO05D005123 3.3e-43 178.3 88 90.9
VMungo1309G0143 Vigna mungo HOM05D004365 ORTHO05D005123 7.3e-43 177.2 88 88.6
AUR62041403 Chenopodium quinoa HOM05D004365 ORTHO05D005123 6.9e-41 170.6 93 81.7
Os07g0615800 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 9.0e-41 170.2 115 60.9
Sabra10G0110300 Salix brachista HOM05D004365 ORTHO05D005123 2.0e-40 169.1 115 67.8
arahy.Tifrunner.gnm1.ann1.2XVX11 Arachis hypogaea HOM05D004365 ORTHO05D005123 1.3e-39 166.4 114 64.9
AUR62016130 Chenopodium quinoa HOM05D004365 ORTHO05D005123 1.7e-39 166.0 80 90.0
TPR.G10905 Trifolium pratense HOM05D004365 ORTHO05D005123 1.7e-39 166.0 88 83.0
Rhsim02G0004900 Rhododendron simsii HOM05D004365 ORTHO05D005123 2.2e-39 165.6 90 82.2
SGA_v2.0_scaffold119G32662 Striga asiatica HOM05D004365 ORTHO05D005123 2.9e-39 165.2 84 88.1
FAN12G3053 Fragaria x ananassa HOM05D004365 ORTHO05D005123 6.4e-39 164.1 80 91.2
FvH4_3g15650 Fragaria vesca HOM05D004365 ORTHO05D005123 4.2e-38 161.4 80 88.8
FAN12G1077 Fragaria x ananassa HOM05D004365 ORTHO05D005123 1.6e-37 159.5 82 86.6
Zm00001eb138580 Zea mays HOM05D004365 ORTHO05D005123 3.5e-37 158.3 81 82.7
BraA01t02037Z Brassica rapa HOM05D004365 ORTHO05D005123 4.6e-37 157.9 81 84.0
Zm00001eb086380 Zea mays HOM05D004365 ORTHO05D005123 4.6e-37 157.9 80 83.8
Potri.010G142500 Populus trichocarpa HOM05D004365 ORTHO05D005123 1.0e-36 156.8 94 72.3
Atru.chr4.3028 Acer truncatum HOM05D004365 ORTHO05D005123 1.8e-36 156.0 79 83.5
Zm00001eb230190 Zea mays HOM05D004365 ORTHO05D005123 3.9e-36 154.8 81 82.7
BcaB04g18375 Brassica carinata HOM05D004365 ORTHO05D005123 6.7e-36 154.1 80 82.5
Eucgr.H02672 Eucalyptus grandis HOM05D004365 ORTHO05D005123 5.6e-35 151.0 84 79.8
COL.COLO4_34649 Corchorus olitorius HOM05D001765 ORTHO05D005123 2.1e-34 149.1 77 84.4
Haze_26633 Corylus avellana HOM05D004365 ORTHO05D005123 3.1e-33 145.2 110 60.0
MCO01G087 Micromonas commoda HOM05D004365 ORTHO05D005123 1.0e-28 130.2 111 51.4
Zm00001eb270680 Zea mays HOM05D004365 ORTHO05D005123 4.3e-27 124.8 64 85.9
AL7G38230 Arabidopsis lyrata HOM05D004365 ORTHO05D005123 3.1e-25 118.6 61 82.0
Zm00001eb327460 Zea mays HOM05D004365 ORTHO05D005123 6.5e-23 110.9 97 50.5
Cre12.g505750 Chlamydomonas reinhardtii HOM05D004365 ORTHO05D005123 3.2e-22 108.6 113 48.7
SHI00177 Sapria himalayana HOM05D004365 ORTHO05D005123 2.7e-21 105.5 71 66.2
AagrBONN_evm.TU.Sc2ySwM_117.3306 Anthoceros agrestis HOM05D004365 ORTHO05D005123 4.6e-21 104.8 114 43.9
Hma1.2p1_0096F.1_g047650 Hydrangea macrophylla HOM05D004365 ORTHO05D005123 7.9e-21 104.0 54 83.3
PRCOL_00000204 Prasinoderma coloniale HOM05D004365 ORTHO05D005123 3.3e-19 98.6 113 45.1
Zm00001eb137030 Zea mays HOM05D004365 ORTHO05D005123 3.3e-19 98.6 54 79.6
BcaB01g01499 Brassica carinata HOM05D004365 ORTHO05D005123 2.8e-18 95.5 70 64.3
Cfa024902 Carpinus fangiana HOM05D004365 ORTHO05D005123 1.5e-16 89.7 64 56.2
Hma1.2p1_0234F.1_g098400 Hydrangea macrophylla HOM05D001088 ORTHO05D005123 4.5e-16 88.2 70 61.4
Mapoly0020s0069 Marchantia polymorpha HOM05D004365 ORTHO05D005123 4.5e-16 88.2 117 37.6
SMO304G0059 Selaginella moellendorffii HOM05D004365 ORTHO05D005123 7.9e-13 77.4 104 40.4
AagrBONN_evm.TU.Sc2ySwM_344.170 Anthoceros agrestis HOM05D001942 ORTHO05D001996 2.2e-10 69.3 105 34.3
Os11g0676650 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 1.8e-09 66.2 62 53.2
Pp3c15_5550 Physcomitrium patens HOM05D006029 ORTHO05D007439 2.4e-09 65.9 112 33.0
EL10Ac5g10924 Beta vulgaris HOM05D006029 ORTHO05D007439 3.4e-08 62.0 113 28.3
Sc02g0002910 Simmondsia chinensis HOM05D006029 ORTHO05D007439 5.0e-07 58.2 113 28.3
PGR102G2016 Punica granatum HOM05D006029 ORTHO05D007439 6.5e-07 57.8 112 26.8
Hund17067 Selenicereus undatus HOM05D006029 ORTHO05D007439 1.4e-06 56.6 114 28.1
Ciclev10022957m.g Citrus clementina HOM05D006029 ORTHO05D007439 5.5e-06 54.7 114 28.9
Mapoly0122s0031 Marchantia polymorpha HOM05D004365 ORTHO05D253640 5.5e-06 54.7 88 36.4


User provided reference genes

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