Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE09G0469 Ceratophyllum demersum HOM05D003868 ORTHO05D020386 1.1e-37 159.5 80 100.0
FvH4_6g08670 Fragaria vesca HOM05D003868 ORTHO05D005364 3.0e-35 151.4 78 93.6
FAN02G3718 Fragaria x ananassa HOM05D003868 ORTHO05D005364 3.0e-35 151.4 78 93.6
FAN05G2124 Fragaria x ananassa HOM05D003868 ORTHO05D005364 3.0e-35 151.4 78 93.6
FAN09G4770 Fragaria x ananassa HOM05D003868 ORTHO05D005364 3.0e-35 151.4 78 93.6
Nn4g25324 Nelumbo nucifera HOM05D003868 ORTHO05D005364 3.0e-35 151.4 78 93.6
RcHm_v2.0_Chr3g0458811 Rosa chinensis HOM05D003868 ORTHO05D005364 3.0e-35 151.4 78 93.6
Aa31LG11G9990 Aethionema arabicum HOM05D003868 ORTHO05D005364 6.7e-35 150.2 78 93.6
Actinidia11698 Actinidia chinensis HOM05D003868 ORTHO05D005364 1.1e-34 149.4 78 94.9
Ciclev10028527m.g Citrus clementina HOM05D003868 ORTHO05D005364 1.1e-34 149.4 78 93.6
Lj5g0001875 Lotus japonicus HOM05D003868 ORTHO05D005364 1.1e-34 149.4 78 93.6
EL10Ac6g15321 Beta vulgaris HOM05D003868 ORTHO05D005364 1.5e-34 149.1 78 92.3
Dinv30957 Davidia involucrata HOM05D003868 ORTHO05D005364 1.5e-34 149.1 78 94.9
AL6G38510 Arabidopsis lyrata HOM05D003868 ORTHO05D005364 1.9e-34 148.7 78 91.0
AT5G26680 Arabidopsis thaliana HOM05D003868 ORTHO05D005364 1.9e-34 148.7 78 91.0
Carub.0006s2428 Capsella rubella HOM05D003868 ORTHO05D005364 1.9e-34 148.7 78 91.0
CARHR186910 Cardamine hirsuta HOM05D003868 ORTHO05D005364 1.9e-34 148.7 78 91.0
ECA236G4503 Erigeron canadensis HOM05D003868 ORTHO05D005364 1.9e-34 148.7 78 93.6
PSO170G4013 Papaver somniferum HOM05D003868 ORTHO05D005364 1.9e-34 148.7 78 91.0
PSO357G0419 Papaver somniferum HOM05D003868 ORTHO05D005364 1.9e-34 148.7 78 91.0
Cpa.g.sc48.229 Carica papaya HOM05D003868 ORTHO05D005364 3.3e-34 147.9 78 92.3
Duzib128G0320 Durio zibethinus HOM05D003868 ORTHO05D005364 3.3e-34 147.9 78 92.3
MD04G1184400 Malus domestica HOM05D003868 ORTHO05D005364 3.3e-34 147.9 78 92.3
Migut.K00044 Erythranthe guttata HOM05D003868 ORTHO05D005364 4.3e-34 147.5 78 92.3
CSS0017748 Camellia sinensis var. sinensis HOM05D003868 ORTHO05D005364 5.7e-34 147.1 78 94.9
CiPaw.02G000700 Carya illinoinensis HOM05D003868 ORTHO05D005364 5.7e-34 147.1 78 92.3
HanXRQChr04g0116761 Helianthus annuus HOM05D003868 ORTHO05D005364 5.7e-34 147.1 78 92.3
Manes.08G106600 Manihot esculenta HOM05D003868 ORTHO05D005364 5.7e-34 147.1 78 92.3
TAR362G1038 Trochodendron aralioides HOM05D003868 ORTHO05D005364 7.4e-34 146.7 78 92.3
TAR629G1113 Trochodendron aralioides HOM05D003868 ORTHO05D005364 7.4e-34 146.7 78 92.3
arahy.Tifrunner.gnm1.ann1.XTWP4U Arachis hypogaea HOM05D003868 ORTHO05D005364 9.7e-34 146.4 78 92.3
Prupe.6G302900 Prunus persica HOM05D003868 ORTHO05D005364 9.7e-34 146.4 78 91.0
PGR083G0274 Punica granatum HOM05D003868 ORTHO05D005364 9.7e-34 146.4 78 91.0
Thecc.05G330900 Theobroma cacao HOM05D003868 ORTHO05D005364 9.7e-34 146.4 78 91.0
Atru.chr12.1514 Acer truncatum HOM05D003868 ORTHO05D005364 1.3e-33 146.0 78 91.0
DCAR_029304 Daucus carota HOM05D003868 ORTHO05D005364 1.3e-33 146.0 78 91.0
Eucgr.H01340 Eucalyptus grandis HOM05D003868 ORTHO05D005364 1.3e-33 146.0 78 91.0
Lsat_1_v5_gn_7_23500 Lactuca sativa HOM05D003868 ORTHO05D005364 1.3e-33 146.0 78 91.0
Potri.013G000700 Populus trichocarpa HOM05D003868 ORTHO05D005364 1.3e-33 146.0 78 91.0
Sabra13G0000600 Salix brachista HOM05D003868 ORTHO05D005364 1.3e-33 146.0 78 91.0
MSTRG.20351 Avicennia marina HOM05D003868 ORTHO05D005364 1.6e-33 145.6 78 89.7
COL.COLO4_28215 Corchorus olitorius HOM05D003868 ORTHO05D005364 1.6e-33 145.6 78 91.0
Lj5C315T22 Lonicera japonica HOM05D003868 ORTHO05D005364 1.6e-33 145.6 78 89.7
Manes.09G182200 Manihot esculenta HOM05D003868 ORTHO05D005364 1.6e-33 145.6 78 91.0
TWI12G0833 Tripterygium wilfordii HOM05D003868 ORTHO05D005364 1.6e-33 145.6 78 91.0
arahy.Tifrunner.gnm1.ann1.936SG4 Arachis hypogaea HOM05D003868 ORTHO05D005364 2.2e-33 145.2 78 91.0
A06p36880 Brassica napus HOM05D003868 ORTHO05D005364 2.2e-33 145.2 78 89.7
Thhalv10004386m.g Eutrema salsugineum HOM05D003868 ORTHO05D005364 2.2e-33 145.2 78 89.7
Mapoly0083s0081 Marchantia polymorpha HOM05D003868 ORTHO05D005364 2.2e-33 145.2 78 88.5
Sp2g21320 Schrenkiella parvula HOM05D003868 ORTHO05D005364 2.2e-33 145.2 78 89.7
Sed0020210 Sechium edule HOM05D003868 ORTHO05D005364 2.2e-33 145.2 78 91.0
Zm00001eb294290 Zea mays HOM05D003868 ORTHO05D005364 2.2e-33 145.2 78 91.0
Gohir.A10G176900 Gossypium hirsutum HOM05D003868 ORTHO05D005364 2.8e-33 144.8 78 91.0
Gohir.D10G183600 Gossypium hirsutum HOM05D003868 ORTHO05D005364 2.8e-33 144.8 78 91.0
Gorai.011G205800 Gossypium raimondii HOM05D003868 ORTHO05D005364 2.8e-33 144.8 78 91.0
THA.LOC104818763 Tarenaya hassleriana HOM05D003868 ORTHO05D005364 2.8e-33 144.8 78 91.0
HPP92_017212 Vanilla planifolia HOM05D003868 ORTHO05D005364 2.8e-33 144.8 78 89.7
GSVIVG01031344001 Vitis vinifera HOM05D003868 ORTHO05D005364 2.8e-33 144.8 78 89.7
MBI18_g03859_MAGBIO Magnolia biondii HOM05D003868 ORTHO05D005364 3.7e-33 144.4 78 92.3
Glyma.10G141800 Glycine max HOM05D003868 ORTHO05D005364 4.8e-33 144.1 78 89.7
Glyma.20G090300 Glycine max HOM05D003868 ORTHO05D005364 4.8e-33 144.1 78 89.7
Os05g0540100 Oryza sativa ssp. japonica HOM05D003868 ORTHO05D005364 4.8e-33 144.1 78 89.7
QL03p011251 Quercus lobata HOM05D003868 ORTHO05D005364 4.8e-33 144.1 78 88.5
SEGI_17973 Sequoiadendron giganteum HOM05D003868 ORTHO05D005364 4.8e-33 144.1 78 88.5
TWI56G0733 Tripterygium wilfordii HOM05D003868 ORTHO05D005364 4.8e-33 144.1 78 89.7
Ca_10214_v3 Cicer arietinum L. HOM05D003868 ORTHO05D005364 6.3e-33 143.7 78 88.5
ClCG03G017940 Citrullus lanatus HOM05D003868 ORTHO05D005364 6.3e-33 143.7 78 89.7
MELO3C015225.2 Cucumis melo HOM05D003868 ORTHO05D005364 6.3e-33 143.7 78 89.7
CsaV3_1G038240 Cucumis sativus L. HOM05D003868 ORTHO05D005364 6.3e-33 143.7 78 89.7
TPR.G34902 Trifolium pratense HOM05D003868 ORTHO05D005364 6.3e-33 143.7 78 88.5
C07p41620 Brassica napus HOM05D003868 ORTHO05D005364 8.2e-33 143.3 78 88.5
Medtr1g085130 Medicago truncatula HOM05D003868 ORTHO05D005364 8.2e-33 143.3 78 88.5
PGR031G0514 Punica granatum HOM05D003868 ORTHO05D005364 8.2e-33 143.3 78 89.7
SalBow1G5269 Salvia bowleyana HOM05D003868 ORTHO05D005364 1.1e-32 142.9 78 88.5
VMungo0720G2099 Vigna mungo HOM05D003868 ORTHO05D005364 1.4e-32 142.5 78 87.2
Lalb_Chr06g0167231 Lupinus albus HOM05D003868 ORTHO05D005364 1.8e-32 142.1 78 89.7
Aqoxy5G02863 Aquilegia oxysepala HOM05D003868 ORTHO05D005364 2.4e-32 141.7 78 88.5
Cc02_g36030 Coffea canephora HOM05D003868 ORTHO05D005364 2.4e-32 141.7 78 88.5
ATR0693G183 Amborella trichopoda HOM05D003868 ORTHO05D005364 3.1e-32 141.4 78 88.5
Psat6g156480 Pisum sativum HOM05D003868 ORTHO05D005364 3.1e-32 141.4 78 87.2
AagrBONN_evm.TU.Sc2ySwM_344.2826 Anthoceros agrestis HOM05D003868 ORTHO05D005364 4.1e-32 141.0 78 88.5
Gohir.D13G117100 Gossypium hirsutum HOM05D003868 ORTHO05D005364 5.3e-32 140.6 78 88.5
Gorai.013G131700 Gossypium raimondii HOM05D003868 ORTHO05D005364 5.3e-32 140.6 78 88.5
Phvul.007G206500 Phaseolus vulgaris HOM05D003868 ORTHO05D005364 6.9e-32 140.2 78 85.9
Nitab4.5_0000541g0020 Nicotiana tabacum HOM05D003868 ORTHO05D005364 9.0e-32 139.8 78 87.2
Nitab4.5_0003511g0030 Nicotiana tabacum HOM05D003868 ORTHO05D005364 9.0e-32 139.8 78 87.2
SMO201G0085 Selaginella moellendorffii HOM05D003868 ORTHO05D005364 1.2e-31 139.4 75 88.0
Gohir.A13G114100 Gossypium hirsutum HOM05D003868 ORTHO05D005364 2.0e-31 138.7 78 87.2
Rhsim05G0124800 Rhododendron simsii HOM05D003868 ORTHO05D005364 2.6e-31 138.3 95 76.8
SGA_v2.0_scaffold5G02926 Striga asiatica HOM05D003868 ORTHO05D005364 3.4e-31 137.9 78 84.6
BraA06t26613Z Brassica rapa HOM05D003868 ORTHO05D005364 4.5e-31 137.5 74 89.2
Lalb_Chr02g0147421 Lupinus albus HOM05D003868 ORTHO05D005364 4.5e-31 137.5 78 85.9
Peaxi162Scf00194g00323 Petunia axillaris HOM05D003868 ORTHO05D005364 4.5e-31 137.5 78 85.9
Sc07g0001850 Simmondsia chinensis HOM05D003868 ORTHO05D005364 4.5e-31 137.5 78 85.9
MSTRG.5173 Avicennia marina HOM05D003868 ORTHO05D005364 5.9e-31 137.1 78 83.3
CBR_g39652 Chara braunii HOM05D003868 ORTHO05D005364 7.7e-31 136.7 78 84.6
Solyc01g102370.4 Solanum lycopersicum HOM05D003868 ORTHO05D005364 7.7e-31 136.7 78 85.9
Sopen01g044820 Solanum pennellii HOM05D003868 ORTHO05D005364 7.7e-31 136.7 78 85.9
SHI18007 Sapria himalayana HOM05D003868 ORTHO05D005364 1.0e-30 136.3 74 89.2
Pp3c11_1310 Physcomitrium patens HOM05D003868 ORTHO05D005364 1.3e-30 136.0 78 84.6
Pp3c2_30860 Physcomitrium patens HOM05D003868 ORTHO05D005364 1.3e-30 136.0 78 83.3
BolC7t44696H Brassica oleracea HOM05D003868 ORTHO05D005364 1.7e-30 135.6 74 87.8
SalBow4G0333 Salvia bowleyana HOM05D003868 ORTHO05D005364 1.7e-30 135.6 78 84.6
Gohir.D04G082216 Gossypium hirsutum HOM05D003868 ORTHO05D020386 2.2e-30 135.2 78 84.6
CSS0027931 Camellia sinensis var. sinensis HOM05D003868 ORTHO05D005364 2.9e-30 134.8 78 84.6
CSS0029807 Camellia sinensis var. sinensis HOM05D003868 ORTHO05D005364 2.9e-30 134.8 78 84.6
Eucgr.B01331 Eucalyptus grandis HOM05D003868 ORTHO05D005364 3.8e-30 134.4 78 80.8
Eucgr.B01329 Eucalyptus grandis HOM05D003868 ORTHO05D005364 6.5e-30 133.7 78 79.5
Eucgr.B01348 Eucalyptus grandis HOM05D003868 ORTHO05D005364 8.5e-30 133.3 78 80.8
Eucgr.B01344 Eucalyptus grandis HOM05D003868 ORTHO05D005364 1.9e-29 132.1 78 79.5
Eucgr.B01835 Eucalyptus grandis HOM05D003868 ORTHO05D005364 4.2e-29 131.0 78 80.8
Eucgr.B01339 Eucalyptus grandis HOM05D003868 ORTHO05D005364 5.5e-29 130.6 78 79.5
Eucgr.B01328 Eucalyptus grandis HOM05D003868 ORTHO05D005364 7.2e-29 130.2 79 78.5
Eucgr.B01341 Eucalyptus grandis HOM05D003868 ORTHO05D005364 4.6e-28 127.5 76 78.9
MCO07G337 Micromonas commoda HOM05D003868 ORTHO05D005364 6.1e-28 127.1 78 76.9
Eucgr.J01445 Eucalyptus grandis HOM05D003868 ORTHO05D005364 7.9e-28 126.7 74 81.1
Eucgr.B01326 Eucalyptus grandis HOM05D003868 ORTHO05D005364 1.0e-27 126.3 78 76.9
PSO761G0576 Papaver somniferum HOM05D003868 ORTHO05D005364 1.0e-27 126.3 78 78.2
PSO210G0203 Papaver somniferum HOM05D003868 ORTHO05D005364 1.8e-27 125.6 78 78.2
CAN.G1248.3 Capsicum annuum HOM05D003868 ORTHO05D005364 2.3e-27 125.2 71 85.9
Cre03.g145687 Chlamydomonas reinhardtii HOM05D003868 ORTHO05D005364 2.3e-27 125.2 78 74.4
Aqoxy2G02412 Aquilegia oxysepala HOM05D003868 ORTHO05D005364 5.1e-27 124.0 78 75.6
Hund04404 Selenicereus undatus HOM05D003868 ORTHO05D005364 5.1e-27 124.0 65 90.8
AUR62003554 Chenopodium quinoa HOM05D003868 ORTHO05D005364 6.7e-27 123.6 65 90.8
AUR62017868 Chenopodium quinoa HOM05D003868 ORTHO05D005364 6.7e-27 123.6 65 90.8
Migut.N00980 Erythranthe guttata HOM05D003868 ORTHO05D005364 8.8e-27 123.2 79 77.2
CDE09G0829 Ceratophyllum demersum HOM05D003868 ORTHO05D005364 3.3e-26 121.3 61 100.0
Eucgr.B01342 Eucalyptus grandis HOM05D003868 ORTHO05D005364 7.4e-26 120.2 96 64.6
Haze_15009 Corylus avellana HOM05D003868 ORTHO05D005364 1.3e-25 119.4 63 92.1
SGA_v2.0_scaffold464G51994 Striga asiatica HOM05D003868 ORTHO05D005364 1.3e-25 119.4 65 86.2
TAR633G2595 Trochodendron aralioides HOM05D003868 ORTHO05D005364 1.3e-25 119.4 63 90.5
PRCOL_00001649 Prasinoderma coloniale HOM05D003868 ORTHO05D005364 3.7e-25 117.9 78 69.2
Gohir.D07G145601 Gossypium hirsutum HOM05D003868 ORTHO05D020386 1.1e-24 116.3 65 87.7
Gorai.001G157600 Gossypium raimondii HOM05D003868 ORTHO05D020386 1.1e-24 116.3 65 87.7
Eucgr.B01335 Eucalyptus grandis HOM05D003868 ORTHO05D005364 5.3e-24 114.0 71 77.5
SalBow1G5332 Salvia bowleyana HOM05D003868 ORTHO05D005364 6.9e-24 113.6 61 88.5
Os03g0834000 Oryza sativa ssp. japonica HOM05D003868 ORTHO05D005364 1.2e-23 112.8 78 70.5
PSO210G1262 Papaver somniferum HOM05D003868 ORTHO05D005364 7.7e-23 110.2 78 66.7
Gorai.006G067700 Gossypium raimondii HOM05D003868 ORTHO05D020386 2.2e-22 108.6 65 83.1
Eucgr.B01336 Eucalyptus grandis HOM05D003868 ORTHO05D005364 1.4e-21 105.9 71 73.2
HPP92_017311 Vanilla planifolia HOM05D003868 ORTHO05D005364 1.9e-21 105.5 78 70.5
vmacro19799 Vaccinium macrocarpon HOM05D003868 ORTHO05D005364 3.2e-21 104.8 71 76.1
BcaB04g19723 Brassica carinata HOM05D003868 ORTHO05D005364 5.5e-21 104.0 74 66.2
Haze_27230 Corylus avellana HOM05D003868 ORTHO05D005364 6.1e-20 100.5 78 60.3
Gorai.007G242800 Gossypium raimondii HOM05D003868 ORTHO05D001188 4.8e-17 90.9 59 72.9
TAR633G1950 Trochodendron aralioides HOM05D003868 ORTHO05D005364 1.1e-16 89.7 96 53.1
HanXRQChr14g0443961 Helianthus annuus HOM05D003868 ORTHO05D020386 4.5e-15 84.3 49 81.6
Gohir.D04G090400 Gossypium hirsutum HOM05D003868 ORTHO05D020386 1.9e-13 79.0 48 79.2
Gorai.006G051000 Gossypium raimondii HOM05D003868 ORTHO05D047802 3.6e-12 74.7 43 81.4
Gohir.D09G043900 Gossypium hirsutum HOM05D003868 ORTHO05D047802 6.1e-12 73.9 43 79.1
Eucgr.B01346 Eucalyptus grandis HOM05D003868 ORTHO05D005364 1.8e-11 72.4 55 65.5
Zm00001eb211370 Zea mays HOM05D003868 ORTHO05D005364 2.6e-10 68.6 62 58.1
Eucgr.B01834 Eucalyptus grandis HOM05D003868 ORTHO05D005364 5.7e-10 67.4 61 59.0
Gohir.A09G086698 Gossypium hirsutum HOM05D003868 ORTHO05D017991 8.2e-09 63.5 33 87.9
Gohir.D05G317650 Gossypium hirsutum HOM05D003868 ORTHO05D017991 8.2e-09 63.5 33 87.9
Gohir.D06G153950 Gossypium hirsutum HOM05D003868 ORTHO05D046938 8.2e-09 63.5 33 87.9
Gohir.D13G088850 Gossypium hirsutum HOM05D003868 ORTHO05D017991 8.2e-09 63.5 33 87.9
Gorai.002G098200 Gossypium raimondii HOM05D003868 ORTHO05D046938 1.1e-08 63.2 32 90.6
Gohir.D03G046101 Gossypium hirsutum HOM05D003868 ORTHO05D017991 2.4e-08 62.0 33 84.8
Gohir.D05G357560 Gossypium hirsutum HOM05D004364 ORTHO05D017991 2.4e-08 62.0 33 84.8
Gohir.D11G177550 Gossypium hirsutum HOM05D004364 ORTHO05D017991 3.1e-08 61.6 33 84.8
Gorai.002G149500 Gossypium raimondii HOM05D003868 ORTHO05D017991 3.1e-08 61.6 33 84.8
Gohir.D05G358720 Gossypium hirsutum HOM05D003868 ORTHO05D017991 4.1e-08 61.2 33 84.8
Gohir.D10G199250 Gossypium hirsutum HOM05D004364 ORTHO05D017991 4.1e-08 61.2 33 84.8
Gohir.D07G182750 Gossypium hirsutum HOM05D003868 ORTHO05D036083 1.7e-06 55.8 29 86.2
Gorai.010G176300 Gossypium raimondii HOM05D003868 ORTHO05D036083 2.9e-06 55.1 29 86.2


User provided reference genes

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