Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE09G0142 Ceratophyllum demersum HOM05D003868 ORTHO05D005364 5.7e-101 370.9 189 100.0
MD04G1184400 Malus domestica HOM05D003868 ORTHO05D005364 1.7e-84 316.2 188 84.6
RcHm_v2.0_Chr3g0458811 Rosa chinensis HOM05D003868 ORTHO05D005364 6.3e-84 314.3 188 84.0
TAR362G1038 Trochodendron aralioides HOM05D003868 ORTHO05D005364 3.1e-83 312.0 188 81.9
FvH4_6g08670 Fragaria vesca HOM05D003868 ORTHO05D005364 5.4e-83 311.2 188 83.0
Aqoxy5G02863 Aquilegia oxysepala HOM05D003868 ORTHO05D005364 1.2e-82 310.1 189 83.1
Manes.08G106600 Manihot esculenta HOM05D003868 ORTHO05D005364 1.2e-82 310.1 188 81.9
FAN09G4770 Fragaria x ananassa HOM05D003868 ORTHO05D005364 2.7e-82 308.9 188 82.4
FAN02G3718 Fragaria x ananassa HOM05D003868 ORTHO05D005364 4.5e-82 308.1 188 82.4
Potri.013G000700 Populus trichocarpa HOM05D003868 ORTHO05D005364 1.0e-81 307.0 189 82.0
Sed0020210 Sechium edule HOM05D003868 ORTHO05D005364 1.7e-81 306.2 189 81.0
TAR629G1113 Trochodendron aralioides HOM05D003868 ORTHO05D005364 1.7e-81 306.2 188 80.9
ECA236G4503 Erigeron canadensis HOM05D003868 ORTHO05D005364 2.3e-81 305.8 188 80.9
Nn4g25324 Nelumbo nucifera HOM05D003868 ORTHO05D005364 2.3e-81 305.8 189 81.5
Thecc.05G330900 Theobroma cacao HOM05D003868 ORTHO05D005364 1.1e-80 303.5 188 80.9
CiPaw.02G000700 Carya illinoinensis HOM05D003868 ORTHO05D005364 1.5e-80 303.1 188 80.9
HanXRQChr04g0116761 Helianthus annuus HOM05D003868 ORTHO05D005364 2.5e-80 302.4 188 79.8
Migut.K00044 Erythranthe guttata HOM05D003868 ORTHO05D005364 4.2e-80 301.6 188 80.9
Oeu034769.2 Olea europaea HOM05D003868 ORTHO05D005364 1.2e-79 300.1 178 83.7
CSS0017748 Camellia sinensis var. sinensis HOM05D003868 ORTHO05D005364 1.6e-79 299.7 188 81.4
Prupe.6G302900 Prunus persica HOM05D003868 ORTHO05D005364 1.6e-79 299.7 167 88.0
TWI12G0833 Tripterygium wilfordii HOM05D003868 ORTHO05D005364 2.1e-79 299.3 188 80.3
Gohir.A10G176900 Gossypium hirsutum HOM05D003868 ORTHO05D005364 3.6e-79 298.5 188 80.3
Ca_10214_v3 Cicer arietinum L. HOM05D003868 ORTHO05D005364 4.7e-79 298.1 188 80.3
Gorai.011G205800 Gossypium raimondii HOM05D003868 ORTHO05D005364 4.7e-79 298.1 188 80.3
Gohir.D10G183600 Gossypium hirsutum HOM05D003868 ORTHO05D005364 1.0e-78 297.0 188 79.8
Carub.0006s2428 Capsella rubella HOM05D003868 ORTHO05D005364 1.4e-78 296.6 188 79.3
MBI18_g03859_MAGBIO Magnolia biondii HOM05D003868 ORTHO05D005364 1.4e-78 296.6 189 78.8
Lsat_1_v5_gn_7_23500 Lactuca sativa HOM05D003868 ORTHO05D005364 1.8e-78 296.2 184 81.5
Glyma.20G090300 Glycine max HOM05D003868 ORTHO05D005364 2.3e-78 295.8 188 79.3
PSO357G0419 Papaver somniferum HOM05D003868 ORTHO05D005364 2.3e-78 295.8 189 77.2
GSVIVG01031344001 Vitis vinifera HOM05D003868 ORTHO05D005364 2.3e-78 295.8 178 82.0
Phvul.007G206500 Phaseolus vulgaris HOM05D003868 ORTHO05D005364 3.0e-78 295.4 188 79.3
Haze_15009 Corylus avellana HOM05D003868 ORTHO05D005364 4.0e-78 295.0 167 85.0
MELO3C015225.2 Cucumis melo HOM05D003868 ORTHO05D005364 4.0e-78 295.0 189 78.3
SalBow1G5269 Salvia bowleyana HOM05D003868 ORTHO05D005364 4.0e-78 295.0 188 80.3
SalBow1G5332 Salvia bowleyana HOM05D003868 ORTHO05D005364 4.0e-78 295.0 188 80.3
AT5G26680 Arabidopsis thaliana HOM05D003868 ORTHO05D005364 5.2e-78 294.7 188 78.7
BcaB04g19723 Brassica carinata HOM05D003868 ORTHO05D005364 6.8e-78 294.3 188 76.6
QL03p011251 Quercus lobata HOM05D003868 ORTHO05D005364 8.9e-78 293.9 215 69.8
Sp2g21320 Schrenkiella parvula HOM05D003868 ORTHO05D005364 8.9e-78 293.9 188 77.1
FAN05G2124 Fragaria x ananassa HOM05D003868 ORTHO05D005364 1.2e-77 293.5 167 85.0
Lj5g0001875 Lotus japonicus HOM05D003868 ORTHO05D005364 1.2e-77 293.5 167 84.4
PSO170G4013 Papaver somniferum HOM05D003868 ORTHO05D005364 1.2e-77 293.5 189 76.7
TAR633G1950 Trochodendron aralioides HOM05D003868 ORTHO05D005364 2.0e-77 292.7 176 80.7
Duzib128G0320 Durio zibethinus HOM05D003868 ORTHO05D005364 5.7e-77 291.2 188 78.2
Cpa.g.sc48.229 Carica papaya HOM05D003868 ORTHO05D005364 9.8e-77 290.4 181 80.7
Thhalv10004386m.g Eutrema salsugineum HOM05D003868 ORTHO05D005364 1.7e-76 289.7 188 76.1
Os05g0540100 Oryza sativa ssp. japonica HOM05D003868 ORTHO05D005364 2.2e-76 289.3 189 79.4
Peaxi162Scf00194g00323 Petunia axillaris HOM05D003868 ORTHO05D005364 2.2e-76 289.3 188 78.2
PGSC0003DMG400018278 Solanum tuberosum HOM05D003868 ORTHO05D005364 2.8e-76 288.9 190 77.9
PGR031G0514 Punica granatum HOM05D003868 ORTHO05D005364 3.7e-76 288.5 188 76.6
Sabra13G0000600 Salix brachista HOM05D003868 ORTHO05D005364 4.9e-76 288.1 164 84.1
Atru.chr12.1514 Acer truncatum HOM05D003868 ORTHO05D005364 6.3e-76 287.7 167 83.8
DCAR_029304 Daucus carota HOM05D003868 ORTHO05D005364 6.3e-76 287.7 166 84.3
MSTRG.20351 Avicennia marina HOM05D003868 ORTHO05D005364 8.3e-76 287.3 188 78.7
Rhsim05G0124800 Rhododendron simsii HOM05D003868 ORTHO05D005364 8.3e-76 287.3 164 84.8
Solyc01g102370.4 Solanum lycopersicum HOM05D003868 ORTHO05D005364 8.3e-76 287.3 190 77.4
Sopen01g044820 Solanum pennellii HOM05D003868 ORTHO05D005364 8.3e-76 287.3 190 77.4
Manes.09G182200 Manihot esculenta HOM05D003868 ORTHO05D005364 1.1e-75 287.0 167 83.2
Lalb_Chr06g0167231 Lupinus albus HOM05D003868 ORTHO05D005364 1.4e-75 286.6 189 76.7
Ciclev10028527m.g Citrus clementina HOM05D003868 ORTHO05D005364 2.4e-75 285.8 167 83.8
SGA_v2.0_scaffold464G51994 Striga asiatica HOM05D003868 ORTHO05D005364 2.4e-75 285.8 193 78.8
SEGI_17973 Sequoiadendron giganteum HOM05D003868 ORTHO05D005364 4.1e-75 285.0 183 74.3
AUR62017868 Chenopodium quinoa HOM05D003868 ORTHO05D005364 9.2e-75 283.9 189 76.7
Cc02_g36030 Coffea canephora HOM05D003868 ORTHO05D005364 1.2e-74 283.5 167 80.8
CsaV3_1G038240 Cucumis sativus L. HOM05D003868 ORTHO05D005364 1.2e-74 283.5 164 82.9
Eucgr.H01340 Eucalyptus grandis HOM05D003868 ORTHO05D005364 1.2e-74 283.5 185 77.8
VMungo0720G2099 Vigna mungo HOM05D003868 ORTHO05D005364 1.2e-74 283.5 167 80.8
Glyma.10G141800 Glycine max HOM05D003868 ORTHO05D005364 2.0e-74 282.7 167 80.8
Medtr1g085130 Medicago truncatula HOM05D003868 ORTHO05D005364 2.7e-74 282.3 167 82.0
TPR.G34902 Trifolium pratense HOM05D003868 ORTHO05D005364 2.7e-74 282.3 167 81.4
Zm00001eb294290 Zea mays HOM05D003868 ORTHO05D005364 2.7e-74 282.3 189 76.7
AUR62003554 Chenopodium quinoa HOM05D003868 ORTHO05D005364 5.9e-74 281.2 189 76.2
Nitab4.5_0000541g0020 Nicotiana tabacum HOM05D003868 ORTHO05D005364 5.9e-74 281.2 183 77.6
A06p36880 Brassica napus HOM05D003868 ORTHO05D005364 7.8e-74 280.8 167 80.8
C07p41620 Brassica napus HOM05D003868 ORTHO05D005364 1.0e-73 280.4 167 80.2
BolC7t44696H Brassica oleracea HOM05D003868 ORTHO05D005364 1.0e-73 280.4 167 80.2
THA.LOC104818763 Tarenaya hassleriana HOM05D003868 ORTHO05D005364 1.0e-73 280.4 167 80.8
AL6G38510 Arabidopsis lyrata HOM05D003868 ORTHO05D005364 1.3e-73 280.0 167 80.8
CARHR186910 Cardamine hirsuta HOM05D003868 ORTHO05D005364 2.3e-73 279.3 178 78.7
Nitab4.5_0003511g0030 Nicotiana tabacum HOM05D003868 ORTHO05D005364 2.9e-73 278.9 183 76.5
Sc07g0001850 Simmondsia chinensis HOM05D003868 ORTHO05D005364 2.9e-73 278.9 178 78.1
Aa31LG11G9990 Aethionema arabicum HOM05D003868 ORTHO05D005364 3.8e-73 278.5 167 80.8
arahy.Tifrunner.gnm1.ann1.936SG4 Arachis hypogaea HOM05D003868 ORTHO05D005364 3.8e-73 278.5 167 80.2
CAN.G1248.3 Capsicum annuum HOM05D003868 ORTHO05D005364 5.0e-73 278.1 189 76.2
CSS0027931 Camellia sinensis var. sinensis HOM05D003868 ORTHO05D005364 8.6e-73 277.3 178 77.0
CSS0029807 Camellia sinensis var. sinensis HOM05D003868 ORTHO05D005364 8.6e-73 277.3 178 77.0
Psat6g156480 Pisum sativum HOM05D003868 ORTHO05D005364 1.5e-72 276.6 167 78.4
TWI56G0733 Tripterygium wilfordii HOM05D003868 ORTHO05D005364 1.9e-72 276.2 167 80.2
CDE09G0492 Ceratophyllum demersum HOM05D003868 ORTHO05D005364 9.5e-72 273.9 134 99.3
Dinv30957 Davidia involucrata HOM05D003868 ORTHO05D005364 9.5e-72 273.9 167 82.0
PGR083G0274 Punica granatum HOM05D003868 ORTHO05D005364 1.2e-71 273.5 163 79.1
SHI18007 Sapria himalayana HOM05D003868 ORTHO05D005364 2.8e-71 272.3 167 77.8
HPP92_017212 Vanilla planifolia HOM05D003868 ORTHO05D005364 1.4e-70 270.0 166 76.5
BraA06t26613Z Brassica rapa HOM05D003868 ORTHO05D005364 3.1e-70 268.9 168 78.6
ATR0693G183 Amborella trichopoda HOM05D003868 ORTHO05D005364 4.0e-70 268.5 164 77.4
Eucgr.B01348 Eucalyptus grandis HOM05D003868 ORTHO05D005364 4.4e-69 265.0 164 78.0
Gohir.D13G117100 Gossypium hirsutum HOM05D003868 ORTHO05D005364 2.4e-67 259.2 167 77.2
arahy.Tifrunner.gnm1.ann1.XTWP4U Arachis hypogaea HOM05D003868 ORTHO05D005364 4.1e-67 258.5 208 64.4
AagrBONN_evm.TU.Sc2ySwM_344.2826 Anthoceros agrestis HOM05D003868 ORTHO05D005364 5.4e-67 258.1 172 72.1
Lalb_Chr02g0147411 Lupinus albus HOM05D003868 ORTHO05D005364 9.2e-67 257.3 164 75.6
Gorai.013G131700 Gossypium raimondii HOM05D003868 ORTHO05D005364 2.0e-66 256.1 167 76.6
BcaC03g17876 Brassica carinata HOM05D003868 ORTHO05D005364 6.0e-66 254.6 211 65.4
C02p59150 Brassica napus HOM05D003868 ORTHO05D005364 1.0e-65 253.8 220 62.7
ClCG03G017940 Citrullus lanatus HOM05D003868 ORTHO05D005364 5.0e-65 251.5 220 64.1
SMO201G0085 Selaginella moellendorffii HOM05D003868 ORTHO05D005364 1.1e-64 250.4 158 74.1
BolC2t11970H Brassica oleracea HOM05D003868 ORTHO05D005364 3.3e-64 248.8 198 66.7
Hund04404 Selenicereus undatus HOM05D003868 ORTHO05D005364 9.5e-64 247.3 189 69.3
Pp3c2_30860 Physcomitrium patens HOM05D003868 ORTHO05D005364 1.2e-63 246.9 187 67.9
Pp3c11_1310 Physcomitrium patens HOM05D003868 ORTHO05D005364 2.3e-62 242.7 165 69.7
Aqoxy2G02412 Aquilegia oxysepala HOM05D003868 ORTHO05D005364 6.8e-62 241.1 169 69.8
EL10Ac6g15321 Beta vulgaris HOM05D003868 ORTHO05D005364 3.4e-61 238.8 167 71.9
Mapoly0083s0081 Marchantia polymorpha HOM05D003868 ORTHO05D005364 3.4e-61 238.8 183 67.2
MSTRG.5173 Avicennia marina HOM05D003868 ORTHO05D005364 1.7e-60 236.5 169 71.6
COL.COLO4_28215 Corchorus olitorius HOM05D003868 ORTHO05D005364 2.9e-60 235.7 130 84.6
Eucgr.B01329 Eucalyptus grandis HOM05D003868 ORTHO05D005364 6.6e-57 224.6 178 66.9
PSO761G0576 Papaver somniferum HOM05D003868 ORTHO05D005364 8.6e-57 224.2 167 67.7
CBR_g39652 Chara braunii HOM05D003868 ORTHO05D005364 1.9e-56 223.0 155 67.7
Migut.N00980 Erythranthe guttata HOM05D003868 ORTHO05D005364 1.9e-56 223.0 147 74.1
PSO210G0203 Papaver somniferum HOM05D003868 ORTHO05D005364 2.5e-56 222.6 167 67.1
SalBow4G0333 Salvia bowleyana HOM05D003868 ORTHO05D005364 5.6e-56 221.5 178 64.0
Eucgr.B01834 Eucalyptus grandis HOM05D003868 ORTHO05D005364 1.6e-55 219.9 205 56.6
Lj5C315T22 Lonicera japonica HOM05D003868 ORTHO05D005364 4.7e-55 218.4 131 78.6
Gohir.A13G114100 Gossypium hirsutum HOM05D003868 ORTHO05D005364 1.5e-53 213.4 135 75.6
Eucgr.B01328 Eucalyptus grandis HOM05D003868 ORTHO05D005364 2.6e-53 212.6 180 62.8
Eucgr.B01335 Eucalyptus grandis HOM05D003868 ORTHO05D005364 2.2e-52 209.5 130 76.2
vmacro19799 Vaccinium macrocarpon HOM05D003868 ORTHO05D005364 1.4e-51 206.8 111 87.4
Eucgr.B01346 Eucalyptus grandis HOM05D003868 ORTHO05D005364 2.7e-50 202.6 157 66.2
A02p39430 Brassica napus HOM05D003868 ORTHO05D005364 7.8e-50 201.1 123 76.4
SGA_v2.0_scaffold5G02926 Striga asiatica HOM05D003868 ORTHO05D005364 1.9e-48 196.4 167 59.9
MCO07G337 Micromonas commoda HOM05D003868 ORTHO05D005364 7.3e-48 194.5 191 54.5
Zm00001eb211370 Zea mays HOM05D003868 ORTHO05D005364 3.1e-46 189.1 156 59.6
Eucgr.B01342 Eucalyptus grandis HOM05D003868 ORTHO05D005364 4.0e-46 188.7 162 64.2
Os03g0834000 Oryza sativa ssp. japonica HOM05D003868 ORTHO05D005364 8.9e-46 187.6 188 54.3
Eucgr.B01341 Eucalyptus grandis HOM05D003868 ORTHO05D005364 2.0e-45 186.4 160 64.4
Eucgr.B01331 Eucalyptus grandis HOM05D003868 ORTHO05D005364 2.6e-45 186.0 167 62.3
Eucgr.B01336 Eucalyptus grandis HOM05D003868 ORTHO05D005364 8.4e-44 181.0 166 59.6
Eucgr.B01344 Eucalyptus grandis HOM05D003868 ORTHO05D005364 2.4e-43 179.5 167 59.9
Cre03.g145687 Chlamydomonas reinhardtii HOM05D003868 ORTHO05D005364 7.8e-42 174.5 167 52.7
Eucgr.B01326 Eucalyptus grandis HOM05D003868 ORTHO05D005364 5.1e-41 171.8 192 54.2
Eucgr.B01835 Eucalyptus grandis HOM05D003868 ORTHO05D005364 4.3e-40 168.7 135 65.2
Actinidia17731 Actinidia chinensis HOM05D003868 ORTHO05D005364 1.5e-37 160.2 90 84.4
HPP92_017311 Vanilla planifolia HOM05D003868 ORTHO05D005364 1.9e-35 153.3 167 49.1
PSO210G1262 Papaver somniferum HOM05D003868 ORTHO05D005364 3.5e-34 149.1 159 52.8
SEGI_09019 Sequoiadendron giganteum HOM05D003868 ORTHO05D005364 3.9e-33 145.6 98 70.4
PRCOL_00001649 Prasinoderma coloniale HOM05D003868 ORTHO05D005364 1.5e-32 143.7 191 46.6
Eucgr.B01339 Eucalyptus grandis HOM05D003868 ORTHO05D005364 1.6e-31 140.2 111 68.5
Haze_27230 Corylus avellana HOM05D003868 ORTHO05D005364 6.9e-30 134.8 180 42.2
Atru.chr9.43 Acer truncatum HOM05D003868 ORTHO05D005364 2.1e-26 123.2 73 80.8
Mapoly0013s0018 Marchantia polymorpha HOM05D003868 ORTHO05D005364 8.4e-20 101.3 72 61.1
CSS0040713 Camellia sinensis var. sinensis HOM05D003868 ORTHO05D005364 2.3e-17 93.2 46 89.1
CiPaw.16G091200 Carya illinoinensis HOM05D002606 ORTHO05D003016 4.1e-06 55.8 112 33.9
SEGI_28223 Sequoiadendron giganteum HOM05D003868 ORTHO05D007426 4.1e-06 55.8 39 61.5


User provided reference genes

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