Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE09G0006 Ceratophyllum demersum HOM05D004448 ORTHO05D005919 1.6e-252 875.5 417 100.0
Nn8g38906 Nelumbo nucifera HOM05D004448 ORTHO05D005919 8.7e-102 374.8 425 49.2
PSO210G3334 Papaver somniferum HOM05D004448 ORTHO05D005919 1.5e-93 347.4 447 44.7
vmacro17218 Vaccinium macrocarpon HOM05D004448 ORTHO05D005919 1.5e-93 347.4 424 45.0
vmacro22686 Vaccinium macrocarpon HOM05D004448 ORTHO05D005919 2.5e-93 346.7 423 44.7
RhsimUnG0189000 Rhododendron simsii HOM05D004448 ORTHO05D005919 1.3e-92 344.4 426 45.3
MBI08_g34934_MAGBIO Magnolia biondii HOM05D004448 ORTHO05D005919 3.1e-91 339.7 367 48.2
GSVIVG01015227001 Vitis vinifera HOM05D004448 ORTHO05D005919 5.9e-90 335.5 442 43.2
Actinidia25266 Actinidia chinensis HOM05D004448 ORTHO05D005919 1.7e-89 334.0 442 43.0
Dinv42301 Davidia involucrata HOM05D004448 ORTHO05D005919 1.7e-89 334.0 465 43.4
Rhsim05G0022900 Rhododendron simsii HOM05D004448 ORTHO05D005919 6.5e-89 332.0 462 43.3
PSO210G5509 Papaver somniferum HOM05D004448 ORTHO05D005919 8.5e-89 331.6 438 42.5
CSS0023607 Camellia sinensis var. sinensis HOM05D004448 ORTHO05D005919 1.6e-87 327.4 448 42.4
Dinv36750 Davidia involucrata HOM05D004448 ORTHO05D005919 8.7e-86 321.6 453 40.8
Prupe.7G212600 Prunus persica HOM05D004448 ORTHO05D005919 1.1e-85 321.2 449 41.6
Hma1.2p1_0663F.1_g198910 Hydrangea macrophylla HOM05D004448 ORTHO05D005919 3.7e-84 316.2 442 42.5
Cc06_g11170 Coffea canephora HOM05D004448 ORTHO05D005919 2.6e-82 310.1 435 40.7
TWI32G1061 Tripterygium wilfordii HOM05D004448 ORTHO05D005919 2.6e-82 310.1 444 41.9
FAN26G0987 Fragaria x ananassa HOM05D004448 ORTHO05D005919 1.7e-81 307.4 447 40.9
FAN26G2794 Fragaria x ananassa HOM05D004448 ORTHO05D005919 2.9e-81 306.6 447 40.3
MELO3C015453.2 Cucumis melo HOM05D004448 ORTHO05D005919 1.4e-80 304.3 441 39.9
Aqoxy5G03492 Aquilegia oxysepala HOM05D004448 ORTHO05D005919 2.5e-80 303.5 395 42.5
Duzib168G0645 Durio zibethinus HOM05D004448 ORTHO05D005919 3.2e-80 303.1 464 38.4
CiPaw.03G218000 Carya illinoinensis HOM05D004448 ORTHO05D005919 1.6e-79 300.8 462 40.3
AUR62031324 Chenopodium quinoa HOM05D004448 ORTHO05D005919 1.6e-79 300.8 428 40.7
EL10Ac8g19309 Beta vulgaris HOM05D004448 ORTHO05D005919 2.1e-79 300.4 424 41.3
RcHm_v2.0_Chr2g0093041 Rosa chinensis HOM05D004448 ORTHO05D005919 3.6e-79 299.7 450 41.3
COL.COLO4_18221 Corchorus olitorius HOM05D004448 ORTHO05D005919 4.6e-79 299.3 455 38.5
Nitab4.5_0000938g0020 Nicotiana tabacum HOM05D004448 ORTHO05D005919 6.1e-79 298.9 456 38.6
Thecc.09G092200 Theobroma cacao HOM05D004448 ORTHO05D005919 6.1e-79 298.9 461 39.7
FvH4_1g07151 Fragaria vesca HOM05D004448 ORTHO05D005919 1.4e-78 297.7 448 40.2
Nitab4.5_0000713g0030 Nicotiana tabacum HOM05D004448 ORTHO05D005919 1.4e-78 297.7 455 37.6
Ah.14g085380 Amaranthus hybridus HOM05D004448 ORTHO05D005919 8.8e-78 295.0 429 40.8
PGR142G4073 Punica granatum HOM05D004448 ORTHO05D005919 8.8e-78 295.0 450 39.8
ClCG03G015750 Citrullus lanatus HOM05D004448 ORTHO05D005919 7.4e-77 292.0 442 38.5
Haze_25890 Corylus avellana HOM05D004448 ORTHO05D005919 7.4e-77 292.0 440 39.8
QL02p063021 Quercus lobata HOM05D004448 ORTHO05D005919 7.4e-77 292.0 466 38.8
Rhsim03G0233500 Rhododendron simsii HOM05D004448 ORTHO05D005919 1.3e-76 291.2 479 37.8
Phvul.004G171600 Phaseolus vulgaris HOM05D004448 ORTHO05D005919 2.2e-76 290.4 435 39.5
AUR62027409 Chenopodium quinoa HOM05D004448 ORTHO05D005919 3.7e-76 289.7 429 39.9
Glyma.07G128700 Glycine max HOM05D004448 ORTHO05D005919 3.7e-76 289.7 437 40.0
Eucgr.C00913 Eucalyptus grandis HOM05D004448 ORTHO05D005919 8.2e-76 288.5 475 39.2
DCAR_024685 Daucus carota HOM05D004448 ORTHO05D005919 1.4e-75 287.7 456 37.1
Hund06702 Selenicereus undatus HOM05D004448 ORTHO05D005919 2.4e-75 287.0 406 41.9
Lj2g0008301 Lotus japonicus HOM05D004448 ORTHO05D005919 3.1e-75 286.6 461 39.0
Peaxi162Scf00175g00047 Petunia axillaris HOM05D004448 ORTHO05D005919 4.1e-75 286.2 451 38.8
PGSC0003DMG400033614 Solanum tuberosum HOM05D004448 ORTHO05D005919 4.5e-74 282.7 460 37.2
Oeu024590.1 Olea europaea HOM05D004448 ORTHO05D005919 1.3e-73 281.2 373 44.0
Solyc07g021550.3 Solanum lycopersicum HOM05D004448 ORTHO05D005919 1.3e-73 281.2 459 36.8
Sopen07g011050 Solanum pennellii HOM05D004448 ORTHO05D005919 2.9e-73 280.0 459 36.8
arahy.Tifrunner.gnm1.ann1.LLR3FQ Arachis hypogaea HOM05D004448 ORTHO05D005919 6.5e-73 278.9 364 44.5
Cfa003108 Carpinus fangiana HOM05D004448 ORTHO05D005919 8.5e-73 278.5 433 39.7
CANSAT56G0950 Cannabis sativa HOM05D004448 ORTHO05D005919 1.4e-72 277.7 373 42.6
SalBow6G4094 Salvia bowleyana HOM05D004448 ORTHO05D005919 1.4e-72 277.7 373 42.9
arahy.Tifrunner.gnm1.ann1.6Q96ZG Arachis hypogaea HOM05D004448 ORTHO05D005919 5.5e-72 275.8 363 44.1
Medtr7g090060 Medicago truncatula HOM05D004448 ORTHO05D005919 1.8e-70 270.8 375 42.9
FAN23G3053 Fragaria x ananassa HOM05D004448 ORTHO05D005919 3.0e-70 270.0 427 38.4
Lsat_1_v5_gn_5_145680 Lactuca sativa HOM05D004448 ORTHO05D005919 3.9e-70 269.6 423 39.2
Potri.006G150000 Populus trichocarpa HOM05D004448 ORTHO05D005919 3.9e-70 269.6 456 37.9
Gohir.D08G265800 Gossypium hirsutum HOM05D004448 ORTHO05D005919 2.6e-69 266.9 383 41.5
FAN19G1271 Fragaria x ananassa HOM05D004448 ORTHO05D005919 3.3e-69 266.5 423 38.1
Medtr6g092520 Medicago truncatula HOM05D004448 ORTHO05D005919 3.3e-69 266.5 370 41.6
Manes.03G032000 Manihot esculenta HOM05D004448 ORTHO05D005919 2.2e-68 263.8 447 36.9
CsaV3_1G040260 Cucumis sativus L. HOM05D004448 ORTHO05D005919 4.8e-68 262.7 438 37.9
Psat1g049640 Pisum sativum HOM05D004448 ORTHO05D005919 8.2e-68 261.9 371 41.8
Sc18g0001910 Simmondsia chinensis HOM05D004448 ORTHO05D005919 1.4e-67 261.2 378 41.5
VMungo0464G0625 Vigna mungo HOM05D005189 ORTHO05D006093 1.8e-67 260.8 379 41.4
Sabra06G0118700 Salix brachista HOM05D004448 ORTHO05D005919 1.6e-66 257.7 462 35.3
Gohir.A08G245000 Gossypium hirsutum HOM05D004448 ORTHO05D005919 2.6e-66 256.9 376 41.2
Gohir.D08G266000 Gossypium hirsutum HOM05D004448 ORTHO05D005919 4.5e-66 256.1 372 40.6
CsaV3_UNG066510 Cucumis sativus L. HOM05D004448 ORTHO05D005919 7.7e-66 255.4 431 37.6
THA.LOC104813490 Tarenaya hassleriana HOM05D004448 ORTHO05D005919 1.3e-65 254.6 447 37.4
Nitab4.5_0004087g0010 Nicotiana tabacum HOM05D004448 ORTHO05D005919 5.0e-65 252.7 369 39.3
RcHm_v2.0_Chr2g0093031 Rosa chinensis HOM05D004448 ORTHO05D005919 5.0e-65 252.7 435 38.4
HanXRQChr12g0354731 Helianthus annuus HOM05D004448 ORTHO05D005919 1.6e-63 247.7 381 40.4
Cpa.g.sc7.238 Carica papaya HOM05D004448 ORTHO05D005919 3.6e-63 246.5 290 43.8
Duzib150G0429 Durio zibethinus HOM05D004448 ORTHO05D005919 1.0e-62 245.0 451 35.0
BcaC02g12705 Brassica carinata HOM05D004448 ORTHO05D005919 5.2e-62 242.7 418 35.9
CSS0050052 Camellia sinensis var. sinensis HOM05D004448 ORTHO05D005919 6.7e-62 242.3 467 36.0
BraA10t43502Z Brassica rapa HOM05D004448 ORTHO05D005919 1.2e-61 241.5 445 36.2
AT5G56780 Arabidopsis thaliana HOM05D004448 ORTHO05D005919 2.6e-61 240.4 443 36.8
C09p48340 Brassica napus HOM05D004448 ORTHO05D005919 2.6e-61 240.4 445 36.0
BcaC04g20054 Brassica carinata HOM05D004448 ORTHO05D005919 5.7e-61 239.2 445 36.0
BcaC02g12506 Brassica carinata HOM05D004448 ORTHO05D005919 7.5e-61 238.8 428 35.0
BolC9t57684H Brassica oleracea HOM05D004448 ORTHO05D005919 7.5e-61 238.8 445 36.0
BcaB08g36059 Brassica carinata HOM05D004448 ORTHO05D005919 1.3e-60 238.0 446 35.0
HPP92_006937 Vanilla planifolia HOM05D004448 ORTHO05D005919 1.3e-60 238.0 262 47.7
A10p14110 Brassica napus HOM05D004448 ORTHO05D005919 2.2e-60 237.3 445 36.0
C04p01820 Brassica napus HOM05D004448 ORTHO05D005919 3.7e-60 236.5 427 37.2
Migut.J00591 Erythranthe guttata HOM05D004448 ORTHO05D005919 8.2e-60 235.3 277 45.1
unitig_0.g218 Utricularia gibba HOM05D004448 ORTHO05D005919 1.4e-59 234.6 406 36.7
vmacro06280 Vaccinium macrocarpon HOM05D004448 ORTHO05D005919 1.4e-59 234.6 271 45.4
AL8G32620 Arabidopsis lyrata HOM05D004448 ORTHO05D005919 1.8e-59 234.2 445 35.7
Mapoly0070s0093 Marchantia polymorpha HOM05D004448 ORTHO05D005919 2.4e-59 233.8 397 35.8
ECA234G2909 Erigeron canadensis HOM05D004448 ORTHO05D005919 9.1e-59 231.9 280 46.1
Aa31LG3G12720 Aethionema arabicum HOM05D004448 ORTHO05D005919 1.2e-58 231.5 447 35.6
Ciclev10010615m.g Citrus clementina HOM05D004448 ORTHO05D005919 1.2e-58 231.5 426 33.8
CARHR270530 Cardamine hirsuta HOM05D004448 ORTHO05D005919 5.9e-58 229.2 439 35.5
Zm00001eb325970 Zea mays HOM05D004448 ORTHO05D005919 7.7e-58 228.8 516 32.6
BraA05t19157Z Brassica rapa HOM05D004448 ORTHO05D005919 6.5e-57 225.7 431 33.6
Carub.0008s1726 Capsella rubella HOM05D004448 ORTHO05D005919 6.5e-57 225.7 441 35.8
Sp6g18520 Schrenkiella parvula HOM05D004448 ORTHO05D005919 1.1e-56 224.9 446 34.3
Thhalv10015325m.g Eutrema salsugineum HOM05D004448 ORTHO05D005919 1.5e-56 224.6 443 36.6
Gohir.A08G244900 Gossypium hirsutum HOM05D004448 ORTHO05D005919 1.9e-56 224.2 435 37.7
Atru.chr7.1561 Acer truncatum HOM05D004448 ORTHO05D005919 3.2e-56 223.4 305 41.0
Ciclev10008074m.g Citrus clementina HOM05D004448 ORTHO05D005919 8.0e-55 218.8 413 33.7
Aa31LG2G21230 Aethionema arabicum HOM05D004448 ORTHO05D005919 5.2e-54 216.1 431 34.1
ATR0705G152 Amborella trichopoda HOM05D004448 ORTHO05D005919 5.4e-51 206.1 281 40.2
Os07g0586700 Oryza sativa ssp. japonica HOM05D004448 ORTHO05D005919 5.9e-50 202.6 377 35.3
Ca_08398_v3 Cicer arietinum L. HOM05D004448 ORTHO05D005919 1.1e-48 198.4 271 44.3
A05p01610 Brassica napus HOM05D004448 ORTHO05D005919 2.5e-48 197.2 279 40.1
Pp3c3_34250 Physcomitrium patens HOM05D004448 ORTHO05D005919 1.5e-45 188.0 302 38.1
AagrBONN_evm.TU.Sc2ySwM_117.4075 Anthoceros agrestis HOM05D004448 ORTHO05D005919 2.4e-43 180.6 332 34.6
TPR.G40396 Trifolium pratense HOM05D004448 ORTHO05D005919 7.0e-43 179.1 230 44.8
CBR_g29538 Chara braunii HOM05D004448 ORTHO05D005919 1.0e-41 175.3 454 29.5
Rhsim03G0233900 Rhododendron simsii HOM05D004448 ORTHO05D005919 5.6e-40 169.5 265 35.8
FvH4_1g07150 Fragaria vesca HOM05D004448 ORTHO05D005919 4.7e-39 166.4 313 35.1
Pp3c4_9790 Physcomitrium patens HOM05D004448 ORTHO05D005919 3.0e-38 163.7 316 34.2
SMO139G0129 Selaginella moellendorffii HOM05D006068 ORTHO05D007579 3.0e-38 163.7 314 35.0
Sed0012121 Sechium edule HOM05D004448 ORTHO05D005919 1.3e-36 158.3 325 35.1
SMO157G0009 Selaginella moellendorffii HOM05D006068 ORTHO05D007579 7.0e-35 152.5 295 34.2
RhsimUnG0145000 Rhododendron simsii HOM05D004448 ORTHO05D005919 1.0e-33 148.7 248 39.1
Gorai.N024000 Gossypium raimondii HOM05D004448 ORTHO05D005919 5.0e-33 146.4 360 30.0
MD02G1076000 Malus domestica HOM05D004448 ORTHO05D005919 5.0e-33 146.4 125 53.6
Gohir.A08G245100 Gossypium hirsutum HOM05D004448 ORTHO05D005919 2.5e-32 144.1 169 46.7
CARHR270520 Cardamine hirsuta HOM05D004448 ORTHO05D005919 7.3e-32 142.5 248 37.9
Pp3c27_3080 Physcomitrium patens HOM05D004448 ORTHO05D005919 2.1e-31 141.0 537 26.6
CANSAT56G3488 Cannabis sativa HOM05D004448 ORTHO05D005919 1.1e-30 138.7 247 37.2
TPR.G35500 Trifolium pratense HOM05D004448 ORTHO05D005919 4.0e-30 136.7 127 52.8
Pp3c16_1200 Physcomitrium patens HOM05D004448 ORTHO05D005919 1.2e-29 135.2 530 24.5
Rhsim05G0023200 Rhododendron simsii HOM05D004448 ORTHO05D005919 2.0e-29 134.4 242 38.0
RhsimUnG0144800 Rhododendron simsii HOM05D004448 ORTHO05D005919 2.0e-29 134.4 242 38.0
SGA_v2.0_scaffold62G21589 Striga asiatica HOM05D004448 ORTHO05D005919 5.4e-27 126.3 124 51.6
Pp3c15_21310 Physcomitrium patens HOM05D004448 ORTHO05D005919 1.7e-25 121.3 364 26.1
MD02G1075500 Malus domestica HOM05D004448 ORTHO05D005919 1.1e-24 118.6 244 36.1
Lalb_Chr24g0393831 Lupinus albus HOM05D004448 ORTHO05D005919 1.2e-23 115.2 132 46.2
AL8G32610 Arabidopsis lyrata HOM05D004448 ORTHO05D005919 1.1e-22 112.1 147 40.8
TPR.G35590 Trifolium pratense HOM05D004448 ORTHO05D005919 1.8e-22 111.3 84 61.9
Atru.chr7.1555 Acer truncatum HOM05D004448 ORTHO05D005919 2.6e-21 107.5 89 55.1
SalBow1G6253 Salvia bowleyana HOM05D004448 ORTHO05D005919 4.4e-21 106.7 125 44.8
AT5G56770 Arabidopsis thaliana HOM05D004448 ORTHO05D005919 5.8e-21 106.3 165 38.8
Hma1.2p1_0024F.1_g016070 Hydrangea macrophylla HOM05D004448 ORTHO05D005919 3.7e-20 103.6 97 51.5
Atru.chr7.1554 Acer truncatum HOM05D004448 ORTHO05D005919 1.2e-18 98.6 180 35.0
CARHR233700 Cardamine hirsuta HOM05D004448 ORTHO05D015948 1.6e-18 98.2 432 24.5
Pp3c5_7060 Physcomitrium patens HOM05D004448 ORTHO05D005919 2.1e-18 97.8 380 25.5
Carub.0008s1725 Capsella rubella HOM05D004448 ORTHO05D005919 2.7e-18 97.4 154 37.7
Carub.0007s1478 Capsella rubella HOM05D004448 ORTHO05D015948 2.3e-17 94.4 270 29.6
Gohir.D08G265900 Gossypium hirsutum HOM05D004448 ORTHO05D005919 2.3e-17 94.4 360 24.7
AL7G26800 Arabidopsis lyrata HOM05D004448 ORTHO05D015948 8.6e-17 92.4 432 23.4
RhsimUnG0032400 Rhododendron simsii HOM05D004448 ORTHO05D005919 5.2e-14 83.2 241 30.7
Pp3c9_23170 Physcomitrium patens HOM05D004448 ORTHO05D005919 8.4e-12 75.9 194 26.3
BraA01t01701Z Brassica rapa HOM05D004448 ORTHO05D015948 1.4e-11 75.1 206 30.6
CBR_g20264 Chara braunii HOM05D000505 ORTHO05D000301 1.9e-11 74.7 136 33.1
Medtr6g092480 Medicago truncatula HOM05D012533 ORTHO05D264910 1.9e-11 74.7 68 45.6
AT4G26170 Arabidopsis thaliana HOM05D004448 ORTHO05D015948 1.6e-10 71.6 105 39.0
Medtr6g092500 Medicago truncatula HOM05D004448 ORTHO05D005919 2.7e-10 70.9 87 44.8
FvH4_1g07231 Fragaria vesca HOM05D004448 ORTHO05D005919 4.6e-10 70.1 127 37.0
Thhalv10025245m.g Eutrema salsugineum HOM05D004448 ORTHO05D015948 3.0e-09 67.4 88 44.3
Glyma.01G003300 Glycine max HOM05D004448 ORTHO05D005919 1.9e-08 64.7 91 38.5
Aa31LG3G540 Aethionema arabicum HOM05D001256 ORTHO05D001141 2.5e-08 64.3 88 43.2
Sp7g24190 Schrenkiella parvula HOM05D004448 ORTHO05D015948 4.3e-08 63.5 88 46.6


User provided reference genes

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