Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE08G0099 Ceratophyllum demersum HOM05D000251 ORTHO05D007889 0.0e+00 1810.0 990 100.0
Nn4g23656 Nelumbo nucifera HOM05D000251 ORTHO05D007889 2.0e-261 906.4 818 58.8
TAR622G0769 Trochodendron aralioides HOM05D000251 ORTHO05D007889 4.7e-255 885.2 836 57.3
QL10p022316 Quercus lobata HOM05D000251 ORTHO05D007889 6.1e-255 884.8 911 53.9
Dinv36870 Davidia involucrata HOM05D000251 ORTHO05D007889 7.3e-248 861.3 810 56.7
Prupe.5G214300 Prunus persica HOM05D000251 ORTHO05D007889 2.8e-247 859.4 810 57.0
Cfa019845 Carpinus fangiana HOM05D000251 ORTHO05D007889 1.1e-246 857.4 943 51.6
GSVIVG01008206001 Vitis vinifera HOM05D000251 ORTHO05D007889 2.3e-246 856.3 850 55.9
COL.COLO4_32187 Corchorus olitorius HOM05D000251 ORTHO05D007889 6.8e-246 854.7 917 53.0
Lj9C433G11 Lonicera japonica HOM05D000251 ORTHO05D007889 7.5e-245 851.3 799 56.1
Aqoxy3G00409 Aquilegia oxysepala HOM05D000251 ORTHO05D007889 1.3e-244 850.5 796 57.2
Rhsim08G0149100 Rhododendron simsii HOM05D000251 ORTHO05D007889 1.3e-244 850.5 908 52.3
CiPaw.15G123200 Carya illinoinensis HOM05D000251 ORTHO05D007889 7.1e-243 844.7 799 57.4
Thecc.03G114900 Theobroma cacao HOM05D000251 ORTHO05D007889 9.2e-243 844.3 798 57.6
CSS0040641 Camellia sinensis var. sinensis HOM05D000251 ORTHO05D007889 6.0e-242 841.6 846 53.9
Atru.chr9.705 Acer truncatum HOM05D000251 ORTHO05D007889 1.3e-241 840.5 828 54.8
Gohir.A03G074400 Gossypium hirsutum HOM05D000251 ORTHO05D007889 1.3e-241 840.5 875 53.4
RcHm_v2.0_Chr7g0184311 Rosa chinensis HOM05D000251 ORTHO05D007889 2.3e-241 839.7 831 54.8
Gohir.D03G100900 Gossypium hirsutum HOM05D000251 ORTHO05D007889 3.0e-241 839.3 875 53.7
Gorai.003G106300 Gossypium raimondii HOM05D000251 ORTHO05D007889 1.5e-240 837.0 876 53.3
CANSAT80G2803 Cannabis sativa HOM05D000251 ORTHO05D007889 2.5e-240 836.3 813 54.9
Duzib205G0552 Durio zibethinus HOM05D000251 ORTHO05D007889 1.2e-239 833.9 908 51.4
Cc04_g07720 Coffea canephora HOM05D000251 ORTHO05D007889 1.6e-239 833.6 798 56.5
Ciclev10018692m.g Citrus clementina HOM05D000251 ORTHO05D007889 2.3e-238 829.7 910 50.5
MD14G1219700 Malus domestica HOM05D000251 ORTHO05D007889 4.0e-238 828.9 815 54.7
Actinidia31039 Actinidia chinensis HOM05D000251 ORTHO05D007889 4.4e-237 825.5 838 53.9
arahy.Tifrunner.gnm1.ann1.ESZ5GR Arachis hypogaea HOM05D000251 ORTHO05D007889 4.4e-237 825.5 927 49.3
Nitab4.5_0000646g0050 Nicotiana tabacum HOM05D000251 ORTHO05D007889 5.8e-237 825.1 917 50.7
FAN18G2230 Fragaria x ananassa HOM05D000251 ORTHO05D007889 7.6e-237 824.7 845 53.6
Potri.012G058100 Populus trichocarpa HOM05D000251 ORTHO05D007889 9.9e-237 824.3 860 52.7
Nitab4.5_0004342g0020 Nicotiana tabacum HOM05D000251 ORTHO05D007889 1.7e-236 823.5 848 53.2
Lj4g0022759 Lotus japonicus HOM05D000251 ORTHO05D007889 3.7e-236 822.4 928 50.0
PGR044G2008 Punica granatum HOM05D000251 ORTHO05D007889 7.1e-235 818.1 805 55.4
Migut.G01282 Erythranthe guttata HOM05D000251 ORTHO05D007889 2.1e-234 816.6 827 53.6
ATR0723G093 Amborella trichopoda HOM05D000251 ORTHO05D007889 2.7e-234 816.2 825 55.2
arahy.Tifrunner.gnm1.ann1.MAJ7P0 Arachis hypogaea HOM05D000251 ORTHO05D007889 3.5e-234 815.8 934 48.9
Lalb_Chr12g0197521 Lupinus albus HOM05D000251 ORTHO05D007889 1.0e-233 814.3 846 52.7
CsaV3_1G003490 Cucumis sativus L. HOM05D000251 ORTHO05D007889 5.1e-233 812.0 832 54.0
MD06G1209200 Malus domestica HOM05D000251 ORTHO05D007889 5.1e-233 812.0 802 54.2
Ca_02522_v3 Cicer arietinum L. HOM05D000251 ORTHO05D007889 6.6e-233 811.6 811 53.9
TWI81G0067 Tripterygium wilfordii HOM05D000251 ORTHO05D007889 6.6e-233 811.6 797 55.1
FvH4_5g12911 Fragaria vesca HOM05D000251 ORTHO05D007889 8.6e-233 811.2 845 53.0
Peaxi162Scf00017g03036 Petunia axillaris HOM05D000251 ORTHO05D007889 1.9e-232 810.1 800 54.6
VMungo1215G2774 Vigna mungo HOM05D000251 ORTHO05D007889 3.3e-232 809.3 846 52.1
Glyma.17G123700 Glycine max HOM05D000251 ORTHO05D007889 4.3e-232 808.9 912 50.0
Glyma.05G015200 Glycine max HOM05D000251 ORTHO05D007889 2.8e-231 806.2 927 49.5
Psat4g045640 Pisum sativum HOM05D000251 ORTHO05D007889 6.2e-231 805.1 847 51.4
FAN13G2548 Fragaria x ananassa HOM05D000251 ORTHO05D000414 2.4e-230 803.1 807 53.9
HanXRQChr05g0157761 Helianthus annuus HOM05D000251 ORTHO05D007889 3.1e-230 802.7 797 52.3
Sed0011411 Sechium edule HOM05D000251 ORTHO05D007889 8.9e-230 801.2 803 54.8
CAN.G781.3 Capsicum annuum HOM05D000251 ORTHO05D007889 2.0e-229 800.0 910 50.3
Lsat_1_v5_gn_5_24161 Lactuca sativa HOM05D000251 ORTHO05D007889 2.0e-229 800.0 818 52.4
DCAR_015126 Daucus carota HOM05D000251 ORTHO05D007889 5.8e-229 798.5 924 49.0
Sabra12G0041800 Salix brachista HOM05D000251 ORTHO05D007889 7.6e-229 798.1 908 50.8
PSO017G5760 Papaver somniferum HOM05D000251 ORTHO05D007889 4.9e-228 795.4 913 49.6
PSO478G4362 Papaver somniferum HOM05D000251 ORTHO05D007889 4.9e-228 795.4 918 49.8
Manes.05G117300 Manihot esculenta HOM05D000251 ORTHO05D007889 1.1e-227 794.3 750 56.0
AL6G34270 Arabidopsis lyrata HOM05D000251 ORTHO05D007889 1.9e-227 793.5 797 54.7
Medtr4g112420 Medicago truncatula HOM05D000251 ORTHO05D007889 1.9e-227 793.5 802 52.2
Carub.0006s2087 Capsella rubella HOM05D000251 ORTHO05D007889 2.4e-227 793.1 797 54.3
AT5G23080 Arabidopsis thaliana HOM05D000251 ORTHO05D007889 4.2e-227 792.3 795 55.1
Solyc03g114410.3 Solanum lycopersicum HOM05D000251 ORTHO05D007889 4.6e-226 788.9 798 53.6
Haze_18572 Corylus avellana HOM05D000251 ORTHO05D007889 7.8e-226 788.1 820 52.7
Eucgr.K02644 Eucalyptus grandis HOM05D000251 ORTHO05D007889 3.0e-225 786.2 930 50.9
Aa31LG11G2570 Aethionema arabicum HOM05D000251 ORTHO05D007889 3.9e-225 785.8 798 54.4
ECA246G2449 Erigeron canadensis HOM05D000251 ORTHO05D007889 5.1e-225 785.4 799 52.9
SGA_v2.0_scaffold283G46981 Striga asiatica HOM05D000251 ORTHO05D007889 4.8e-223 778.9 924 49.4
Sopen03g033510 Solanum pennellii HOM05D000251 ORTHO05D007889 1.8e-222 776.9 907 49.0
Sp2g24040 Schrenkiella parvula HOM05D000251 ORTHO05D007889 3.1e-222 776.2 840 52.6
FAN18G3790 Fragaria x ananassa HOM05D000251 ORTHO05D007889 2.0e-221 773.5 929 48.2
EL10Ac5g11229 Beta vulgaris HOM05D000251 ORTHO05D007889 3.4e-221 772.7 810 51.6
THA.LOC104819385 Tarenaya hassleriana HOM05D000251 ORTHO05D007889 3.4e-221 772.7 820 53.5
BraA03t13769Z Brassica rapa HOM05D000251 ORTHO05D007889 1.2e-218 764.2 807 52.8
Thhalv10003608m.g Eutrema salsugineum HOM05D000251 ORTHO05D007889 4.6e-218 762.3 806 52.7
TPR.G2793 Trifolium pratense HOM05D000251 ORTHO05D007889 4.6e-218 762.3 804 51.5
A03p46430 Brassica napus HOM05D000251 ORTHO05D007889 6.0e-218 761.9 807 52.7
C07p44450 Brassica napus HOM05D000251 ORTHO05D007889 7.9e-218 761.5 811 52.9
ClCG06G015150 Citrullus lanatus HOM05D000251 ORTHO05D007889 7.9e-218 761.5 820 52.3
BolC7t44966H Brassica oleracea HOM05D000251 ORTHO05D007889 1.5e-216 757.3 811 52.7
MELO3C017274.2 Cucumis melo HOM05D000251 ORTHO05D007889 7.3e-216 755.0 831 51.5
AUR62036928 Chenopodium quinoa HOM05D000251 ORTHO05D007889 4.8e-215 752.3 806 51.6
BraA09t36355Z Brassica rapa HOM05D000251 ORTHO05D007889 6.2e-215 751.9 907 48.8
BcaC04g23479 Brassica carinata HOM05D000251 ORTHO05D007889 6.9e-214 748.4 805 52.0
BolC9t53705H Brassica oleracea HOM05D000251 ORTHO05D007889 6.9e-214 748.4 805 52.0
C09p07920 Brassica napus HOM05D000251 ORTHO05D007889 9.0e-214 748.0 805 51.9
Sc10g0009620 Simmondsia chinensis HOM05D000251 ORTHO05D007889 9.0e-214 748.0 741 52.9
A09p07070 Brassica napus HOM05D000251 ORTHO05D007889 3.4e-213 746.1 806 52.2
vmacro17646 Vaccinium macrocarpon HOM05D000251 ORTHO05D007889 1.9e-211 740.3 1005 43.5
Os06g0489200 Oryza sativa ssp. japonica HOM05D000251 ORTHO05D007889 4.2e-211 739.2 900 49.6
Hund02531 Selenicereus undatus HOM05D000251 ORTHO05D007889 2.7e-210 736.5 914 47.5
Rhsim08G0139200 Rhododendron simsii HOM05D000251 ORTHO05D007889 7.9e-210 734.9 693 55.7
BcaB04g19889 Brassica carinata HOM05D000251 ORTHO05D007889 8.1e-207 724.9 826 50.8
SalBow2G1753 Salvia bowleyana HOM05D000251 ORTHO05D007889 1.5e-205 720.7 812 51.5
Cpa.g.sc13.78 Carica papaya HOM05D000251 ORTHO05D007889 7.6e-205 718.4 743 51.5
AUR62032169 Chenopodium quinoa HOM05D000251 ORTHO05D007889 3.8e-196 689.5 804 48.6
unitig_736.g22471 Utricularia gibba HOM05D000251 ORTHO05D007889 1.3e-191 674.5 804 49.9
Phvul.003G179400 Phaseolus vulgaris HOM05D000251 ORTHO05D007889 3.2e-187 659.8 829 47.0
Ah.02g114420 Amaranthus hybridus HOM05D000251 ORTHO05D007889 8.5e-164 582.0 813 43.1
AagrBONN_evm.TU.Sc2ySwM_344.5190 Anthoceros agrestis HOM05D000251 ORTHO05D007889 5.5e-155 552.7 876 41.3
Pp3c6_280 Physcomitrium patens HOM05D000251 ORTHO05D007889 4.4e-152 543.1 841 41.5
Nn039s41709 Nelumbo nucifera HOM05D000251 ORTHO05D007889 3.4e-144 516.9 506 54.3
SMO358G0348 Selaginella moellendorffii HOM05D000251 ORTHO05D007889 1.3e-143 515.0 822 40.0
Mapoly0043s0012 Marchantia polymorpha HOM05D000251 ORTHO05D007889 6.0e-133 479.6 829 38.2
HPP92_003115 Vanilla planifolia HOM05D000251 ORTHO05D007889 1.2e-130 471.9 668 45.1
SEGI_18733 Sequoiadendron giganteum HOM05D000251 ORTHO05D007889 6.2e-122 443.0 443 53.3
CARHR190450 Cardamine hirsuta HOM05D000251 ORTHO05D007889 4.0e-121 440.3 520 50.8
Hma1.2p1_0595F.1_g186110 Hydrangea macrophylla HOM05D000251 ORTHO05D007889 1.4e-97 362.1 354 51.7
Zm00001eb382170 Zea mays HOM05D000251 ORTHO05D007889 1.1e-86 325.9 507 40.6
CBR_g57132 Chara braunii HOM05D000251 ORTHO05D007889 9.3e-86 322.8 1002 29.2
Hma1.2p1_0595F.1_g186100 Hydrangea macrophylla HOM05D000251 ORTHO05D007889 4.5e-80 303.9 224 66.1
MCO14G468 Micromonas commoda HOM05D000251 ORTHO05D007889 1.8e-60 238.8 721 30.8
Cre13.g568700 Chlamydomonas reinhardtii HOM05D000251 ORTHO05D007889 2.6e-43 181.8 274 40.5
SHI18972 Sapria himalayana HOM05D000251 ORTHO05D007889 2.9e-39 168.3 107 73.8
Ah.02g114430 Amaranthus hybridus HOM05D000169 ORTHO05D000542 7.2e-38 163.7 106 74.5
Actinidia16061 Actinidia chinensis HOM05D000251 ORTHO05D007889 3.1e-33 148.3 163 51.5
BcaC06g33188 Brassica carinata HOM05D000251 ORTHO05D007889 2.1e-29 135.6 257 40.1
Psat4g067080 Pisum sativum HOM05D000251 ORTHO05D007889 7.5e-27 127.1 231 35.5
CiPaw.15G123400 Carya illinoinensis HOM05D000251 ORTHO05D007889 2.3e-23 115.5 86 64.0
Actinidia16060 Actinidia chinensis HOM05D000251 ORTHO05D007889 5.0e-23 114.4 165 41.2
GSVIVG01008210001 Vitis vinifera HOM05D000251 ORTHO05D007889 1.8e-20 105.9 73 69.9
Cfa026338 Carpinus fangiana HOM05D000251 ORTHO05D007889 1.2e-19 103.2 319 31.3
Hma1.2p1_0690F.1_g203840 Hydrangea macrophylla HOM05D000251 ORTHO05D007889 8.3e-10 70.5 46 73.9
Pp3c17_14220 Physcomitrium patens HOM05D005511 ORTHO05D006616 2.1e-08 65.9 65 43.1
Ca_09096_v3 Cicer arietinum L. HOM05D005511 ORTHO05D006616 6.0e-08 64.3 86 38.4
MD15G1105800 Malus domestica HOM05D005511 ORTHO05D006616 7.8e-08 63.9 95 35.8
CANSAT25G2351 Cannabis sativa HOM05D005511 ORTHO05D006616 1.0e-07 63.5 95 36.8
Atru.chr7.2702 Acer truncatum HOM05D005511 ORTHO05D006616 1.3e-07 63.2 89 36.0
CsaV3_5G010440 Cucumis sativus L. HOM05D005511 ORTHO05D006616 2.3e-07 62.4 96 35.4
Psat5g176520 Pisum sativum HOM05D005511 ORTHO05D006616 5.1e-07 61.2 89 37.1
Ciclev10014516m.g Citrus clementina HOM05D005511 ORTHO05D006616 6.6e-07 60.8 89 36.0
MELO3C018377.2 Cucumis melo HOM05D005511 ORTHO05D006616 6.6e-07 60.8 90 34.4
Dinv37487 Davidia involucrata HOM05D005511 ORTHO05D006616 6.6e-07 60.8 89 38.2
QL12p025629 Quercus lobata HOM05D005511 ORTHO05D006616 6.6e-07 60.8 94 36.2
MD08G1126000 Malus domestica HOM05D005511 ORTHO05D006616 8.6e-07 60.5 95 34.7
COL.COLO4_18647 Corchorus olitorius HOM05D005511 ORTHO05D006616 1.1e-06 60.1 89 36.0
vmacro03505 Vaccinium macrocarpon HOM05D005511 ORTHO05D006616 1.1e-06 60.1 88 37.5
VMungo1383G1052 Vigna mungo HOM05D005511 ORTHO05D006616 1.1e-06 60.1 73 39.7
HPP92_005904 Vanilla planifolia HOM05D005511 ORTHO05D006616 1.5e-06 59.7 95 35.8
CBR_g44445 Chara braunii HOM05D005511 ORTHO05D006616 1.9e-06 59.3 64 45.3
Phvul.001G199500 Phaseolus vulgaris HOM05D005511 ORTHO05D006616 2.5e-06 58.9 85 36.5
Glyma.12G151100 Glycine max HOM05D005511 ORTHO05D006616 3.3e-06 58.5 95 36.8
Potri.018G002000 Populus trichocarpa HOM05D005511 ORTHO05D006616 3.3e-06 58.5 88 35.2
Sabra18G0005200 Salix brachista HOM05D005511 ORTHO05D006616 3.3e-06 58.5 75 37.3
CDE07G1638 Ceratophyllum demersum HOM05D005511 ORTHO05D006616 4.3e-06 58.2 85 38.8
Glyma.17G079400 Glycine max HOM05D005511 ORTHO05D006616 4.3e-06 58.2 94 37.2
Lalb_Chr25g0287701 Lupinus albus HOM05D005511 ORTHO05D006616 4.3e-06 58.2 89 37.1
Medtr1g092770 Medicago truncatula HOM05D005511 ORTHO05D006616 4.3e-06 58.2 89 36.0
Gohir.A06G108200 Gossypium hirsutum HOM05D005511 ORTHO05D006616 5.6e-06 57.8 112 31.2
Thecc.09G000500 Theobroma cacao HOM05D005511 ORTHO05D006616 5.6e-06 57.8 89 34.8
TPR.G32311 Trifolium pratense HOM05D005511 ORTHO05D006616 5.6e-06 57.8 89 36.0
arahy.Tifrunner.gnm1.ann1.Q5NSRJ Arachis hypogaea HOM05D005511 ORTHO05D006616 7.3e-06 57.4 89 36.0
arahy.Tifrunner.gnm1.ann1.V3D0DH Arachis hypogaea HOM05D005511 ORTHO05D006616 7.3e-06 57.4 89 36.0
CBR_g29483 Chara braunii HOM05D000785 ORTHO05D006616 7.3e-06 57.4 64 43.8
MELO3C003615.2 Cucumis melo HOM05D005511 ORTHO05D006616 7.3e-06 57.4 90 34.4
Rhsim08G0139300 Rhododendron simsii HOM05D000251 ORTHO05D007889 7.3e-06 57.4 260 28.5


User provided reference genes

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