Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE07G1134 Ceratophyllum demersum HOM05D001849 ORTHO05D004689 0.0e+00 1766.1 853 100.0
CDE06G0404 Ceratophyllum demersum HOM05D001849 ORTHO05D004689 0.0e+00 1545.4 818 91.8
MBI13_g01700_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004689 0.0e+00 1229.9 865 69.8
Cfa003503 Carpinus fangiana HOM05D001849 ORTHO05D004689 0.0e+00 1207.6 868 69.4
GSVIVG01016717001 Vitis vinifera HOM05D001849 ORTHO05D004689 0.0e+00 1204.1 868 68.8
QL05p003662 Quercus lobata HOM05D001849 ORTHO05D004689 0.0e+00 1199.1 857 69.0
Manes.11G016400 Manihot esculenta HOM05D001849 ORTHO05D004689 0.0e+00 1186.0 867 67.7
PSO386G0179 Papaver somniferum HOM05D001849 ORTHO05D004689 0.0e+00 1182.9 866 68.0
CSS0036951 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 0.0e+00 1182.5 860 68.7
CiPaw.01G216000 Carya illinoinensis HOM05D001849 ORTHO05D004689 0.0e+00 1181.8 868 67.7
PSO724G1390 Papaver somniferum HOM05D001849 ORTHO05D004689 0.0e+00 1179.9 870 67.7
TAR626G0833 Trochodendron aralioides HOM05D001849 ORTHO05D004689 0.0e+00 1164.1 852 67.4
Potri.001G165900 Populus trichocarpa HOM05D001849 ORTHO05D004689 0.0e+00 1163.3 866 67.8
TWI59G1440 Tripterygium wilfordii HOM05D001849 ORTHO05D004689 0.0e+00 1160.6 867 66.0
Prupe.3G037400 Prunus persica HOM05D001849 ORTHO05D004689 0.0e+00 1157.5 877 65.3
Sabra01G0127400 Salix brachista HOM05D001849 ORTHO05D004689 0.0e+00 1156.4 860 67.3
MD09G1178100 Malus domestica HOM05D001849 ORTHO05D004689 0.0e+00 1151.3 867 65.3
Gorai.006G094800 Gossypium raimondii HOM05D001849 ORTHO05D004689 0.0e+00 1151.0 860 67.0
Eucgr.K02038 Eucalyptus grandis HOM05D001849 ORTHO05D004689 0.0e+00 1149.8 868 65.9
Atru.chr2.1505 Acer truncatum HOM05D001849 ORTHO05D004689 0.0e+00 1149.4 867 65.4
Cc04_g01040 Coffea canephora HOM05D001849 ORTHO05D004689 0.0e+00 1149.4 867 64.8
Lj3g0004011 Lotus japonicus HOM05D001849 ORTHO05D004689 0.0e+00 1148.7 867 65.7
Sopen12g023890 Solanum pennellii HOM05D001849 ORTHO05D004689 0.0e+00 1146.7 866 64.9
Thecc.06G124800 Theobroma cacao HOM05D001849 ORTHO05D004689 0.0e+00 1145.2 866 65.8
Gohir.A09G079900 Gossypium hirsutum HOM05D001849 ORTHO05D004689 0.0e+00 1144.4 867 66.2
Aqoxy7G04006 Aquilegia oxysepala HOM05D001849 ORTHO05D004689 0.0e+00 1144.0 862 66.6
Solyc12g049410.3 Solanum lycopersicum HOM05D001849 ORTHO05D004689 0.0e+00 1143.6 866 64.8
vmacro15054 Vaccinium macrocarpon HOM05D001849 ORTHO05D004689 0.0e+00 1143.6 868 65.4
FvH4_6g35170 Fragaria vesca HOM05D001849 ORTHO05D004689 0.0e+00 1142.9 866 65.0
Duzib235G0671 Durio zibethinus HOM05D001849 ORTHO05D004689 0.0e+00 1138.6 867 65.6
FAN05G2930 Fragaria x ananassa HOM05D001849 ORTHO05D004689 0.0e+00 1138.6 866 64.8
Gohir.D09G079550 Gossypium hirsutum HOM05D001849 ORTHO05D004689 0.0e+00 1138.6 867 66.1
Duzib192G0006 Durio zibethinus HOM05D001849 ORTHO05D004689 0.0e+00 1138.3 866 65.6
COL.COLO4_30797 Corchorus olitorius HOM05D001849 ORTHO05D004689 0.0e+00 1136.7 866 64.8
RcHm_v2.0_Chr2g0146431 Rosa chinensis HOM05D001849 ORTHO05D004689 0.0e+00 1135.9 869 65.2
CAN.G1243.9 Capsicum annuum HOM05D001849 ORTHO05D004689 0.0e+00 1134.8 860 64.9
CSS0020628 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 0.0e+00 1132.1 882 65.4
DCAR_026423 Daucus carota HOM05D001849 ORTHO05D004689 0.0e+00 1131.7 873 64.5
Ciclev10027090m.g Citrus clementina HOM05D001849 ORTHO05D004689 0.0e+00 1130.5 858 65.7
Sed0016273 Sechium edule HOM05D001849 ORTHO05D004689 0.0e+00 1130.2 872 64.4
MD17G1148600 Malus domestica HOM05D001849 ORTHO05D004689 0.0e+00 1129.4 852 65.3
VMungo0331G1611 Vigna mungo HOM05D001849 ORTHO05D004689 0.0e+00 1127.5 872 64.3
FAN02G0489 Fragaria x ananassa HOM05D001849 ORTHO05D004689 0.0e+00 1124.0 923 61.1
THA.LOC104822664 Tarenaya hassleriana HOM05D001849 ORTHO05D004689 0.0e+00 1124.0 867 64.6
ATR0681G401 Amborella trichopoda HOM05D001849 ORTHO05D004689 0.0e+00 1122.8 870 64.9
Lsat_1_v5_gn_4_91381 Lactuca sativa HOM05D001849 ORTHO05D004689 0.0e+00 1122.8 857 64.9
EL10Ac7g16444 Beta vulgaris HOM05D001849 ORTHO05D004689 0.0e+00 1122.1 909 62.3
Psat4g166880 Pisum sativum HOM05D001849 ORTHO05D004689 0.0e+00 1121.3 882 63.3
TPR.G29992 Trifolium pratense HOM05D001849 ORTHO05D004689 0.0e+00 1119.4 877 63.9
CsaV3_7G034250 Cucumis sativus L. HOM05D001849 ORTHO05D004689 0.0e+00 1119.0 856 65.1
Dinv20408 Davidia involucrata HOM05D001849 ORTHO05D004689 0.0e+00 1119.0 815 67.5
Glyma.07G042000 Glycine max HOM05D001849 ORTHO05D004689 0.0e+00 1119.0 879 63.9
Carub.0003s1373 Capsella rubella HOM05D001849 ORTHO05D004689 0.0e+00 1118.6 864 63.5
PGR119G1999 Punica granatum HOM05D001849 ORTHO05D004689 0.0e+00 1118.6 873 64.1
C05p53520 Brassica napus HOM05D001849 ORTHO05D004689 0.0e+00 1117.1 861 64.2
A05p35330 Brassica napus HOM05D001849 ORTHO05D004689 0.0e+00 1116.3 864 64.4
Medtr8g022010 Medicago truncatula HOM05D001849 ORTHO05D004689 0.0e+00 1115.9 874 63.5
Thhalv10019957m.g Eutrema salsugineum HOM05D001849 ORTHO05D004689 0.0e+00 1115.5 864 63.7
Sp3g12380 Schrenkiella parvula HOM05D001849 ORTHO05D004689 0.0e+00 1114.4 864 63.3
ClCG09G001140 Citrullus lanatus HOM05D001849 ORTHO05D004689 0.0e+00 1114.0 861 65.2
Phvul.010G127100 Phaseolus vulgaris HOM05D001849 ORTHO05D004689 0.0e+00 1114.0 857 64.6
Hund18672 Selenicereus undatus HOM05D001849 ORTHO05D004689 0.0e+00 1113.2 879 63.3
AL3G26350 Arabidopsis lyrata HOM05D001849 ORTHO05D004689 0.0e+00 1111.7 864 63.4
BolC5t34029H Brassica oleracea HOM05D001849 ORTHO05D004689 0.0e+00 1111.7 861 63.9
FAN14G1459 Fragaria x ananassa HOM05D001849 ORTHO05D004689 0.0e+00 1111.7 874 63.3
AT3G14120 Arabidopsis thaliana HOM05D001849 ORTHO05D004689 0.0e+00 1110.9 864 63.3
Lalb_Chr10g0101321 Lupinus albus HOM05D001849 ORTHO05D004689 0.0e+00 1109.0 861 64.3
C01p50480 Brassica napus HOM05D001849 ORTHO05D004689 0.0e+00 1108.2 873 63.1
HanXRQChr09g0277131 Helianthus annuus HOM05D001849 ORTHO05D004689 0.0e+00 1105.1 871 63.3
HPP92_022009 Vanilla planifolia HOM05D001849 ORTHO05D004689 0.0e+00 1104.7 867 62.6
BolC1t05000H Brassica oleracea HOM05D001849 ORTHO05D004689 0.0e+00 1104.4 877 62.7
BcaC05g29121 Brassica carinata HOM05D001849 ORTHO05D004689 0.0e+00 1099.7 861 63.6
ECA232G2821 Erigeron canadensis HOM05D001849 ORTHO05D004689 0.0e+00 1099.3 868 63.8
Haze_16076 Corylus avellana HOM05D001849 ORTHO05D004689 0.0e+00 1099.0 923 62.5
SGA_v2.0_scaffold4G02078 Striga asiatica HOM05D001849 ORTHO05D004689 0.0e+00 1097.0 875 62.4
Lj9C535G6 Lonicera japonica HOM05D001849 ORTHO05D004689 0.0e+00 1096.6 850 65.2
CANSAT56G0878 Cannabis sativa HOM05D001849 ORTHO05D004689 0.0e+00 1096.3 867 63.8
Aa31LG8G1350 Aethionema arabicum HOM05D001849 ORTHO05D004689 0.0e+00 1095.5 864 62.6
BraA05t22343Z Brassica rapa HOM05D001849 ORTHO05D004689 0.0e+00 1090.9 902 61.4
arahy.Tifrunner.gnm1.ann1.RMM65D Arachis hypogaea HOM05D001849 ORTHO05D004689 0.0e+00 1090.5 827 64.9
arahy.Tifrunner.gnm1.ann1.1RN2YG Arachis hypogaea HOM05D001849 ORTHO05D004689 0.0e+00 1086.6 827 64.8
Peaxi162Scf00177g00518 Petunia axillaris HOM05D001849 ORTHO05D004689 0.0e+00 1085.5 848 63.3
FAN09G4066 Fragaria x ananassa HOM05D001849 ORTHO05D004689 5.8e-312 1074.3 866 62.2
Nitab4.5_0000189g0010 Nicotiana tabacum HOM05D001849 ORTHO05D004689 5.8e-310 1067.4 822 63.6
AUR62001443 Chenopodium quinoa HOM05D001849 ORTHO05D004689 9.8e-310 1066.6 883 61.2
AUR62009922 Chenopodium quinoa HOM05D001849 ORTHO05D004689 3.2e-308 1061.6 917 59.2
SalBow7G1889 Salvia bowleyana HOM05D001849 ORTHO05D004689 1.3e-301 1039.6 992 54.7
Zm00001eb165950 Zea mays HOM05D001849 ORTHO05D004689 1.3e-301 1039.6 868 60.5
MELO3C024334.2 Cucumis melo HOM05D001849 ORTHO05D004689 2.8e-296 1021.9 948 56.6
Rhsim08G0241300 Rhododendron simsii HOM05D001849 ORTHO05D004689 1.5e-294 1016.1 868 60.6
Actinidia32206 Actinidia chinensis HOM05D001849 ORTHO05D004689 8.4e-285 983.8 868 59.0
Hma1.2p1_0229F.1_g096770 Hydrangea macrophylla HOM05D001849 ORTHO05D004689 3.4e-270 935.3 701 66.6
Oeu008524.4 Olea europaea HOM05D001849 ORTHO05D004689 4.9e-269 931.4 964 51.8
Migut.D00924 Erythranthe guttata HOM05D001849 ORTHO05D004689 1.2e-262 910.2 717 62.3
CSS0003623 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 5.1e-258 894.8 791 59.4
CSS0050059 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 8.2e-256 887.5 780 59.5
unitig_578.g16691 Utricularia gibba HOM05D001849 ORTHO05D004689 2.9e-253 879.0 842 54.0
A01p39550 Brassica napus HOM05D001849 ORTHO05D004689 8.2e-240 834.3 862 51.4
Mapoly0024s0112 Marchantia polymorpha HOM05D001849 ORTHO05D004689 8.0e-235 817.8 857 50.8
AagrBONN_evm.TU.Sc2ySwM_362.2383 Anthoceros agrestis HOM05D001849 ORTHO05D004689 9.7e-233 810.8 851 49.9
SHI25232 Sapria himalayana HOM05D001849 ORTHO05D004689 2.8e-232 809.3 695 57.6
Nitab4.5_0004322g0010 Nicotiana tabacum HOM05D001849 ORTHO05D004689 9.4e-228 794.3 601 64.6
Pp3c8_15880 Physcomitrium patens HOM05D001849 ORTHO05D004689 1.8e-223 780.0 871 47.6
SMO304G0023 Selaginella moellendorffii HOM05D001849 ORTHO05D004689 2.6e-201 706.4 849 45.9
Hma1.2p1_0229F.1_g096760 Hydrangea macrophylla HOM05D001849 ORTHO05D004689 2.0e-198 696.8 521 66.8
CARHR088980 Cardamine hirsuta HOM05D001849 ORTHO05D004689 1.5e-180 637.5 500 63.6
BraA01t03995Z Brassica rapa HOM05D001849 ORTHO05D004689 2.3e-173 613.6 533 59.8
Ca_23411_v3 Cicer arietinum L. HOM05D001849 ORTHO05D004689 3.6e-163 579.7 459 62.3
Os11g0643700 Oryza sativa ssp. japonica HOM05D001849 ORTHO05D004689 1.5e-156 557.8 468 60.7
Ca_23412_v3 Cicer arietinum L. HOM05D001849 ORTHO05D004689 9.0e-138 495.4 406 62.6
SEGI_21815 Sequoiadendron giganteum HOM05D001849 ORTHO05D004689 1.3e-123 448.4 389 57.8
CBR_g39720 Chara braunii HOM05D001849 ORTHO05D004689 8.2e-123 445.7 988 33.1
Cpa.g.sc169.27 Carica papaya HOM05D001849 ORTHO05D004689 1.9e-111 407.9 319 66.1
Cpa.g.sc169.28 Carica papaya HOM05D001849 ORTHO05D004689 4.1e-82 310.5 240 66.2
FAN05G4033 Fragaria x ananassa HOM05D001849 ORTHO05D004689 1.2e-78 298.9 191 73.8
CSS0033574 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 7.6e-68 263.1 225 60.9
CSS0020573 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 2.3e-64 251.5 234 56.8
Cpa.g.sc169.30 Carica papaya HOM05D001849 ORTHO05D004689 1.6e-57 228.8 175 62.9
QL11p014752 Quercus lobata HOM05D001849 ORTHO05D004689 3.0e-56 224.6 292 44.9
Glyma.16G010300 Glycine max HOM05D001849 ORTHO05D004689 6.9e-53 213.4 157 69.4
CSS0047517 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 4.2e-50 204.1 175 60.0
CSS0019722 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 4.5e-44 184.1 181 56.4
HPP92_021920 Vanilla planifolia HOM05D001849 ORTHO05D004689 2.2e-43 181.8 144 65.3
SEGI_09459 Sequoiadendron giganteum HOM05D001849 ORTHO05D004689 6.7e-40 170.2 147 57.1
MBI18_g40032_MAGBIO Magnolia biondii HOM05D000132 ORTHO05D000058 2.0e-36 158.7 107 71.0
Lsat_1_v5_gn_8_46020 Lactuca sativa HOM05D001849 ORTHO05D004689 1.4e-29 136.0 95 72.6
SEGI_30532 Sequoiadendron giganteum HOM05D001849 ORTHO05D004689 4.5e-28 131.0 89 65.2
Lsat_1_v5_gn_3_42421 Lactuca sativa HOM05D001849 ORTHO05D004689 1.7e-27 129.0 108 59.3
HanXRQChr11g0341991 Helianthus annuus HOM05D001849 ORTHO05D004689 6.5e-27 127.1 90 62.2
Cre10.g425675 Chlamydomonas reinhardtii HOM05D001849 ORTHO05D004689 3.0e-16 91.7 211 28.9
Lsat_1_v5_gn_7_52500 Lactuca sativa HOM05D001849 ORTHO05D004689 7.4e-15 87.0 153 37.9
MBI13_g27860_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004689 2.2e-14 85.5 54 77.8
Cpa.g.sc169.31 Carica papaya HOM05D001849 ORTHO05D004689 3.7e-14 84.7 51 80.4
MBI03_g16538_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004689 6.3e-14 84.0 66 65.2
MBI04_g26258_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004689 8.2e-14 83.6 72 62.5
MBI15_g17575_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004689 9.1e-13 80.1 52 76.9
Zm00001eb307710 Zea mays HOM05D001849 ORTHO05D004689 1.2e-12 79.7 70 58.6
Cpa.g.sc169.29 Carica papaya HOM05D001849 ORTHO05D004689 5.9e-12 77.4 52 65.4
MCO04G165 Micromonas commoda HOM05D001849 ORTHO05D004689 5.9e-12 77.4 260 25.8
PRCOL_00005073 Prasinoderma coloniale HOM05D001849 ORTHO05D004689 1.3e-11 76.3 251 28.3
CSS0036362 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 1.7e-11 75.9 47 68.1
CSS0036461 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 1.4e-10 72.8 47 66.0
SEGI_11558 Sequoiadendron giganteum HOM05D001849 ORTHO05D004689 1.9e-10 72.4 62 54.8
BcaNung06672 Brassica carinata HOM05D001849 ORTHO05D004689 7.2e-10 70.5 202 27.7
SMO304G0098 Selaginella moellendorffii HOM05D027722 ORTHO05D004689 1.4e-08 66.2 201 28.9
SMO304G0054 Selaginella moellendorffii HOM05D027722 ORTHO05D004689 3.9e-08 64.7 217 27.2
SMO164G0082 Selaginella moellendorffii HOM05D027722 ORTHO05D004689 5.7e-07 60.8 158 29.7
BolC2t10453H Brassica oleracea HOM05D001849 ORTHO05D004689 9.7e-07 60.1 48 58.3
C01p30760 Brassica napus HOM05D001849 ORTHO05D042635 2.2e-06 58.9 100 42.0
C02p44100 Brassica napus HOM05D001849 ORTHO05D004689 6.3e-06 57.4 48 56.2
CSS0002239 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 6.3e-06 57.4 41 65.9
Actinidia08004 Actinidia chinensis HOM05D001849 ORTHO05D004689 8.2e-06 57.0 34 76.5


User provided reference genes

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