Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G3053 Ceratophyllum demersum HOM05D003678 ORTHO05D004340 5.0e-134 481.1 240 100.0
CDE02G2639 Ceratophyllum demersum HOM05D003678 ORTHO05D004340 6.5e-118 427.6 259 83.0
CDE05G1087 Ceratophyllum demersum HOM05D003678 ORTHO05D004340 2.5e-85 319.3 203 82.3
MSTRG.25776 Avicennia marina HOM05D003678 ORTHO05D004340 2.6e-74 282.7 263 57.4
Prupe.1G461000 Prunus persica HOM05D003678 ORTHO05D004340 2.6e-74 282.7 263 58.6
RcHm_v2.0_Chr6g0304871 Rosa chinensis HOM05D003678 ORTHO05D004340 2.6e-74 282.7 268 55.2
Glyma.11G172819 Glycine max HOM05D003678 ORTHO05D004340 5.8e-74 281.6 264 55.7
Glyma.17G200200 Glycine max HOM05D003678 ORTHO05D004340 5.8e-74 281.6 264 55.7
Glyma.11G172610 Glycine max HOM05D003678 ORTHO05D004340 9.8e-74 280.8 264 55.3
Hma1.2p1_0379F.1_g139790 Hydrangea macrophylla HOM05D003678 ORTHO05D004340 1.3e-73 280.4 262 54.2
Hma1.2p1_0891F.1_g233175 Hydrangea macrophylla HOM05D003678 ORTHO05D004340 1.3e-73 280.4 262 54.2
Glyma.17G189600 Glycine max HOM05D003678 ORTHO05D004340 2.9e-73 279.3 264 54.9
TAR626G0897 Trochodendron aralioides HOM05D003678 ORTHO05D004340 2.9e-73 279.3 264 56.4
Ca_12869_v3 Cicer arietinum L. HOM05D003678 ORTHO05D004340 3.7e-73 278.9 265 56.2
Cfa013262 Carpinus fangiana HOM05D003678 ORTHO05D004340 4.9e-73 278.5 264 55.3
arahy.Tifrunner.gnm1.ann1.DFD6U9 Arachis hypogaea HOM05D003678 ORTHO05D004340 6.4e-73 278.1 265 54.7
Eucgr.C04005 Eucalyptus grandis HOM05D003678 ORTHO05D004340 6.4e-73 278.1 267 55.4
MBI16_g31785_MAGBIO Magnolia biondii HOM05D003678 ORTHO05D004340 6.4e-73 278.1 268 55.6
Thecc.09G006300 Theobroma cacao HOM05D003678 ORTHO05D004340 6.4e-73 278.1 265 54.3
TAR626G0756 Trochodendron aralioides HOM05D003678 ORTHO05D004340 8.3e-73 277.7 266 56.0
Haze_21723 Corylus avellana HOM05D003678 ORTHO05D004340 1.4e-72 276.9 264 54.9
Duzib168G2376 Durio zibethinus HOM05D003678 ORTHO05D004340 2.4e-72 276.2 267 52.4
Hund03284 Selenicereus undatus HOM05D003678 ORTHO05D004340 2.4e-72 276.2 267 54.3
arahy.Tifrunner.gnm1.ann1.P9WJGS Arachis hypogaea HOM05D003678 ORTHO05D004340 3.2e-72 275.8 265 54.3
CANSAT11G2609 Cannabis sativa HOM05D003678 ORTHO05D004340 4.1e-72 275.4 268 54.5
MD15G1108800 Malus domestica HOM05D003678 ORTHO05D004340 5.4e-72 275.0 264 57.2
Nn8g40427 Nelumbo nucifera HOM05D003678 ORTHO05D004340 5.4e-72 275.0 262 57.6
TAR383G0188 Trochodendron aralioides HOM05D003678 ORTHO05D004340 1.2e-71 273.9 260 55.4
Lj5g0015114 Lotus japonicus HOM05D003678 ORTHO05D004340 1.6e-71 273.5 267 53.6
VMungo0647G0546 Vigna mungo HOM05D003678 ORTHO05D004340 1.6e-71 273.5 269 53.5
SalBow4G1160 Salvia bowleyana HOM05D003678 ORTHO05D004340 2.7e-71 272.7 267 54.3
Manes.03G003200 Manihot esculenta HOM05D003678 ORTHO05D004340 3.5e-71 272.3 263 54.8
Medtr1g009770 Medicago truncatula HOM05D003678 ORTHO05D004340 3.5e-71 272.3 263 53.6
SGA_v2.0_scaffold193G40661 Striga asiatica HOM05D003678 ORTHO05D004340 4.6e-71 271.9 266 54.9
MD08G1131000 Malus domestica HOM05D003678 ORTHO05D004340 7.8e-71 271.2 264 56.4
Sopen12g032280 Solanum pennellii HOM05D003678 ORTHO05D004340 7.8e-71 271.2 268 52.6
Solyc12g096450.2 Solanum lycopersicum HOM05D003678 ORTHO05D004340 1.0e-70 270.8 269 53.2
CANSAT25G1292 Cannabis sativa HOM05D003678 ORTHO05D004340 1.7e-70 270.0 269 53.5
Phvul.001G058800 Phaseolus vulgaris HOM05D003678 ORTHO05D004340 1.7e-70 270.0 270 54.1
TAR383G0531 Trochodendron aralioides HOM05D003678 ORTHO05D004340 1.7e-70 270.0 260 54.6
Dinv03491 Davidia involucrata HOM05D003678 ORTHO05D004340 2.3e-70 269.6 268 54.9
Atru.chr7.2631 Acer truncatum HOM05D003678 ORTHO05D004340 3.9e-70 268.9 265 51.3
QL12p024946 Quercus lobata HOM05D003678 ORTHO05D004340 3.9e-70 268.9 267 52.1
FvH4_2g36910 Fragaria vesca HOM05D003678 ORTHO05D004340 5.1e-70 268.5 266 53.4
Dinv18146 Davidia involucrata HOM05D003678 ORTHO05D004340 6.6e-70 268.1 267 53.9
AUR62009050 Chenopodium quinoa HOM05D003678 ORTHO05D004340 1.5e-69 266.9 267 52.8
FAN20G0096 Fragaria x ananassa HOM05D003678 ORTHO05D004340 1.9e-69 266.5 264 52.7
Aqoxy7G03011 Aquilegia oxysepala HOM05D003678 ORTHO05D004340 2.5e-69 266.2 264 53.8
Lalb_Chr24g0402471 Lupinus albus HOM05D003678 ORTHO05D004340 2.5e-69 266.2 269 52.4
FAN27G1333 Fragaria x ananassa HOM05D003678 ORTHO05D004340 3.3e-69 265.8 265 53.2
AUR62020613 Chenopodium quinoa HOM05D003678 ORTHO05D004340 7.3e-69 264.6 267 52.8
Ah.06g192800 Amaranthus hybridus HOM05D003678 ORTHO05D004340 9.5e-69 264.2 269 52.8
Cpa.g.sc23.4 Carica papaya HOM05D003678 ORTHO05D004340 9.5e-69 264.2 266 53.0
CSS0027905 Camellia sinensis var. sinensis HOM05D003678 ORTHO05D004340 1.2e-68 263.8 264 53.0
Peaxi162Scf00459g00837 Petunia axillaris HOM05D003678 ORTHO05D004340 1.2e-68 263.8 263 52.9
CiPaw.08G019100 Carya illinoinensis HOM05D003678 ORTHO05D004340 1.6e-68 263.5 268 53.0
Ciclev10008476m.g Citrus clementina HOM05D003678 ORTHO05D004340 1.6e-68 263.5 266 53.4
Cc08_g06430 Coffea canephora HOM05D003678 ORTHO05D004340 1.6e-68 263.5 268 52.6
Cc08_g06510 Coffea canephora HOM05D003678 ORTHO05D004340 1.6e-68 263.5 268 52.6
Lsat_1_v5_gn_6_15381 Lactuca sativa HOM05D003678 ORTHO05D004340 1.6e-68 263.5 264 53.0
Gohir.D05G067600 Gossypium hirsutum HOM05D003678 ORTHO05D004340 2.8e-68 262.7 267 51.7
HanXRQChr16g0513211 Helianthus annuus HOM05D003678 ORTHO05D004340 3.6e-68 262.3 268 52.2
Gohir.A05G065000 Gossypium hirsutum HOM05D003678 ORTHO05D004340 4.7e-68 261.9 265 51.7
Gorai.009G068400 Gossypium raimondii HOM05D003678 ORTHO05D004340 4.7e-68 261.9 265 51.7
Lalb_Chr14g0362261 Lupinus albus HOM05D003678 ORTHO05D004340 6.2e-68 261.5 272 51.5
Sc09g0008090 Simmondsia chinensis HOM05D003678 ORTHO05D004340 8.1e-68 261.2 270 53.0
EL10Ac2g03738 Beta vulgaris HOM05D003678 ORTHO05D004340 1.4e-67 260.4 263 52.5
CiPaw.07G213700 Carya illinoinensis HOM05D003678 ORTHO05D004340 2.3e-67 259.6 267 51.3
DCAR_000669 Daucus carota HOM05D003678 ORTHO05D004340 8.9e-67 257.7 264 53.4
FAN15G2333 Fragaria x ananassa HOM05D003678 ORTHO05D004340 8.9e-67 257.7 262 52.3
Potri.006G275300 Populus trichocarpa HOM05D003678 ORTHO05D004340 8.9e-67 257.7 265 54.3
Nitab4.5_0001110g0180 Nicotiana tabacum HOM05D003678 ORTHO05D004340 1.5e-66 256.9 269 50.9
Nitab4.5_0005481g0010 Nicotiana tabacum HOM05D003678 ORTHO05D004340 1.5e-66 256.9 269 50.9
PGSC0003DMG400029367 Solanum tuberosum HOM05D003678 ORTHO05D004340 4.4e-66 255.4 267 49.4
Thhalv10000189m.g Eutrema salsugineum HOM05D003678 ORTHO05D004340 9.9e-66 254.2 260 52.7
Peaxi162Scf00045g01736 Petunia axillaris HOM05D003678 ORTHO05D004340 1.7e-65 253.4 268 51.5
PSO170G4284 Papaver somniferum HOM05D003678 ORTHO05D004340 2.2e-65 253.1 258 51.6
Rhsim07G0170500 Rhododendron simsii HOM05D003678 ORTHO05D004340 2.2e-65 253.1 264 53.0
Sabra06G0213100 Salix brachista HOM05D003678 ORTHO05D004340 4.9e-65 251.9 265 51.7
Nitab4.5_0000555g0240 Nicotiana tabacum HOM05D003678 ORTHO05D004340 6.4e-65 251.5 272 51.8
ClCG05G017500 Citrullus lanatus HOM05D003678 ORTHO05D004340 8.4e-65 251.1 252 54.0
CAN.G566.61 Capsicum annuum HOM05D003678 ORTHO05D004340 1.1e-64 250.8 267 49.4
ECA233G4849 Erigeron canadensis HOM05D003678 ORTHO05D004340 1.4e-64 250.4 265 50.9
GSVIVG01035534001 Vitis vinifera HOM05D003678 ORTHO05D004340 1.9e-64 250.0 230 56.1
AL7G20640 Arabidopsis lyrata HOM05D003678 ORTHO05D004340 3.2e-64 249.2 267 51.7
Gohir.D07G001800 Gossypium hirsutum HOM05D003678 ORTHO05D004340 3.2e-64 249.2 252 52.4
Gorai.001G001500 Gossypium raimondii HOM05D003678 ORTHO05D004340 3.2e-64 249.2 252 52.4
PGR044G2213 Punica granatum HOM05D003678 ORTHO05D004340 3.2e-64 249.2 266 50.4
AL4G14980 Arabidopsis lyrata HOM05D003678 ORTHO05D004340 4.1e-64 248.8 262 53.1
Aa31LG2G18930 Aethionema arabicum HOM05D003678 ORTHO05D004340 7.1e-64 248.1 265 49.8
Thhalv10025366m.g Eutrema salsugineum HOM05D003678 ORTHO05D004340 7.1e-64 248.1 268 50.7
Migut.A00439 Erythranthe guttata HOM05D003678 ORTHO05D004340 1.2e-63 247.3 267 53.2
Oeu040383.1 Olea europaea HOM05D003678 ORTHO05D004340 1.2e-63 247.3 268 51.5
Os06g0693500 Oryza sativa ssp. japonica HOM05D003678 ORTHO05D004340 1.6e-63 246.9 255 51.8
Carub.0007s0914 Capsella rubella HOM05D003678 ORTHO05D004340 2.1e-63 246.5 267 51.3
unitig_32.g11644 Utricularia gibba HOM05D003678 ORTHO05D004340 2.1e-63 246.5 267 50.9
Aa31LG7G11470 Aethionema arabicum HOM05D003678 ORTHO05D004340 3.5e-63 245.7 250 51.6
HPP92_010767 Vanilla planifolia HOM05D003678 ORTHO05D004340 3.5e-63 245.7 273 52.0
Carub.0004s0384 Capsella rubella HOM05D003678 ORTHO05D004340 4.6e-63 245.4 261 52.9
HanXRQChr16g0504351 Helianthus annuus HOM05D003678 ORTHO05D004340 7.8e-63 244.6 268 48.9
Sp4g03510 Schrenkiella parvula HOM05D003678 ORTHO05D004340 1.0e-62 244.2 258 50.8
TPR.G12018 Trifolium pratense HOM05D003678 ORTHO05D004340 1.0e-62 244.2 299 45.8
vmacro05102 Vaccinium macrocarpon HOM05D003678 ORTHO05D004340 2.3e-62 243.0 264 49.2
Zm00001eb226230 Zea mays HOM05D003678 ORTHO05D004340 2.3e-62 243.0 263 52.1
CARHR239300 Cardamine hirsuta HOM05D003678 ORTHO05D004340 3.0e-62 242.7 267 50.6
Gohir.A07G001400 Gossypium hirsutum HOM05D003678 ORTHO05D004340 3.9e-62 242.3 252 51.2
Potri.018G006300 Populus trichocarpa HOM05D003678 ORTHO05D004340 3.9e-62 242.3 268 50.4
Sed0004467 Sechium edule HOM05D003678 ORTHO05D004340 3.9e-62 242.3 250 52.4
AT2G24500 Arabidopsis thaliana HOM05D003678 ORTHO05D004340 5.1e-62 241.9 259 52.5
Sed0010708 Sechium edule HOM05D003678 ORTHO05D004340 1.1e-61 240.7 252 53.6
Psat6g032480 Pisum sativum HOM05D003678 ORTHO05D004340 2.5e-61 239.6 260 49.6
SEGI_16726 Sequoiadendron giganteum HOM05D003678 ORTHO05D004340 2.5e-61 239.6 269 48.0
TWI63G1033 Tripterygium wilfordii HOM05D003678 ORTHO05D004340 4.3e-61 238.8 266 50.0
Lsat_1_v5_gn_3_27981 Lactuca sativa HOM05D003678 ORTHO05D004340 5.6e-61 238.4 267 51.3
CsaV3_3G047000 Cucumis sativus L. HOM05D003678 ORTHO05D004340 9.6e-61 237.7 248 53.2
HanXRQChr12g0384061 Helianthus annuus HOM05D003678 ORTHO05D004340 9.6e-61 237.7 258 50.8
ATR0580G292 Amborella trichopoda HOM05D003678 ORTHO05D004340 1.6e-60 236.9 257 51.4
MELO3C003636.2 Cucumis melo HOM05D003678 ORTHO05D004340 2.1e-60 236.5 252 52.0
BcaNung04590 Brassica carinata HOM05D003678 ORTHO05D004340 3.6e-60 235.7 264 48.5
BcaB06g27975 Brassica carinata HOM05D003678 ORTHO05D004340 4.7e-60 235.3 260 48.5
AT4G31420 Arabidopsis thaliana HOM05D003678 ORTHO05D004340 6.2e-60 235.0 267 49.1
A01p06860 Brassica napus HOM05D003678 ORTHO05D004340 6.2e-60 235.0 261 49.0
BraA01t00637Z Brassica rapa HOM05D003678 ORTHO05D004340 6.2e-60 235.0 261 49.0
BcaC09g51921 Brassica carinata HOM05D003678 ORTHO05D004340 8.1e-60 234.6 269 47.2
C01p07630 Brassica napus HOM05D003678 ORTHO05D004340 8.1e-60 234.6 269 47.2
BolC1t00743H Brassica oleracea HOM05D003678 ORTHO05D004340 8.1e-60 234.6 269 47.2
BcaC02g08448 Brassica carinata HOM05D003678 ORTHO05D004340 2.4e-59 233.0 268 48.1
BolC4t26963H Brassica oleracea HOM05D003678 ORTHO05D004340 2.4e-59 233.0 268 48.1
Sp7g29280 Schrenkiella parvula HOM05D003678 ORTHO05D004340 3.1e-59 232.6 267 47.6
C04p54110 Brassica napus HOM05D003678 ORTHO05D004340 5.2e-59 231.9 266 47.7
PSO063G6534 Papaver somniferum HOM05D003678 ORTHO05D004340 2.6e-58 229.6 256 49.2
PGSC0003DMG401026315 Solanum tuberosum HOM05D003678 ORTHO05D004340 5.8e-58 228.4 266 50.4
THA.LOC104803597 Tarenaya hassleriana HOM05D003678 ORTHO05D004340 5.8e-58 228.4 266 48.9
C08p39190 Brassica napus HOM05D003678 ORTHO05D004340 1.3e-57 227.3 226 52.7
BolC8t51492H Brassica oleracea HOM05D003678 ORTHO05D004340 1.3e-57 227.3 226 52.7
A04p18800 Brassica napus HOM05D003678 ORTHO05D004340 1.4e-56 223.8 265 45.7
CARHR117530 Cardamine hirsuta HOM05D003678 ORTHO05D004340 1.4e-56 223.8 260 48.8
CAN.G673.15 Capsicum annuum HOM05D003678 ORTHO05D004340 4.2e-56 222.2 256 48.8
Sopen08g002420 Solanum pennellii HOM05D003678 ORTHO05D004340 3.5e-55 219.2 228 51.8
BraA09t41018Z Brassica rapa HOM05D003678 ORTHO05D004340 6.0e-55 218.4 259 46.7
Solyc08g006470.4 Solanum lycopersicum HOM05D003678 ORTHO05D004340 1.5e-53 213.8 229 51.1
BcaC07g40924 Brassica carinata HOM05D003678 ORTHO05D004340 1.9e-53 213.4 226 49.1
BraA04t17489Z Brassica rapa HOM05D003678 ORTHO05D004340 4.3e-53 212.2 263 44.5
Lj7A752T54 Lonicera japonica HOM05D003678 ORTHO05D004340 7.3e-53 211.5 235 51.1
Medtr1g047010 Medicago truncatula HOM05D003678 ORTHO05D004340 1.3e-52 210.7 206 54.9
COL.COLO4_19043 Corchorus olitorius HOM05D003678 ORTHO05D004340 3.6e-52 209.1 234 49.1
A09p56240 Brassica napus HOM05D003678 ORTHO05D004340 6.9e-51 204.9 282 41.8
Mapoly0085s0044 Marchantia polymorpha HOM05D003678 ORTHO05D004340 2.9e-49 199.5 268 42.5
BcaC07g37410 Brassica carinata HOM05D003678 ORTHO05D004340 6.4e-49 198.4 226 47.3
Actinidia03577 Actinidia chinensis HOM05D003678 ORTHO05D004340 2.4e-48 196.4 234 47.0
Oeu018570.1 Olea europaea HOM05D003678 ORTHO05D004340 2.1e-47 193.4 228 46.5
SMO143G0266 Selaginella moellendorffii HOM05D003678 ORTHO05D004340 2.7e-47 193.0 258 45.3
Pp3c2_4670 Physcomitrium patens HOM05D003678 ORTHO05D004340 6.2e-44 181.8 269 39.8
Manes.16G136200 Manihot esculenta HOM05D003678 ORTHO05D004340 2.4e-43 179.9 255 45.5
AagrBONN_evm.TU.Sc2ySwM_228.5550 Anthoceros agrestis HOM05D003678 ORTHO05D004340 5.3e-43 178.7 227 45.8
CBR_g30359 Chara braunii HOM05D003678 ORTHO05D004340 5.1e-38 162.2 314 35.4
Nitab4.5_0004131g0030 Nicotiana tabacum HOM05D003678 ORTHO05D004340 5.1e-38 162.2 182 52.7
TAR383G1077 Trochodendron aralioides HOM05D003678 ORTHO05D004340 7.6e-34 148.3 192 47.4
ECA246G1371 Erigeron canadensis HOM05D000763 ORTHO05D004340 4.2e-32 142.5 242 39.3
BolC8t47735H Brassica oleracea HOM05D003678 ORTHO05D004340 5.1e-30 135.6 198 41.4
C03p31060 Brassica napus HOM05D003678 ORTHO05D004340 1.3e-28 131.0 197 41.6
BolC1t05292H Brassica oleracea HOM05D003678 ORTHO05D004340 1.2e-23 114.4 193 39.4
BcaC05g27745 Brassica carinata HOM05D003678 ORTHO05D004340 6.1e-23 112.1 81 64.2
C05p37300 Brassica napus HOM05D003678 ORTHO05D004340 6.1e-23 112.1 81 64.2
C08p08900 Brassica napus HOM05D003678 ORTHO05D004340 1.8e-22 110.5 81 63.0
Medtr5g061270 Medicago truncatula HOM05D003678 ORTHO05D004340 2.2e-20 103.6 135 49.6
Pp3c14_26000 Physcomitrium patens HOM05D003678 ORTHO05D004340 1.9e-16 90.5 88 47.7
Cfa025296 Carpinus fangiana HOM05D003678 ORTHO05D004340 2.5e-16 90.1 272 28.7
A04p16990 Brassica napus HOM05D003678 ORTHO05D004340 4.8e-12 75.9 84 50.0
BcaC01g05020 Brassica carinata HOM05D003678 ORTHO05D004340 1.8e-11 73.9 112 40.2
BcaB03g16788 Brassica carinata HOM05D003678 ORTHO05D004340 2.4e-11 73.6 45 68.9
BcaC09g48197 Brassica carinata HOM05D003678 ORTHO05D011193 1.5e-10 70.9 42 69.0
PRCOL_00002050 Prasinoderma coloniale HOM05D003678 ORTHO05D004340 1.5e-10 70.9 260 25.4
BcaC06g31298 Brassica carinata HOM05D003678 ORTHO05D004340 2.0e-10 70.5 38 73.7
BcaC09g48198 Brassica carinata HOM05D003678 ORTHO05D004340 4.5e-10 69.3 76 50.0
Pp3c17_19500 Physcomitrium patens HOM05D003678 ORTHO05D004340 1.7e-09 67.4 51 49.0
CAN.G4.3 Capsicum annuum HOM05D003678 ORTHO05D004340 2.9e-09 66.6 38 65.8
SHI21127 Sapria himalayana HOM05D003678 ORTHO05D004340 8.0e-07 58.5 54 50.0
BcaC05g28588 Brassica carinata HOM05D015584 ORTHO05D016118 6.7e-06 55.5 32 68.8


User provided reference genes

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