Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G3554 Ceratophyllum demersum HOM05D005536 ORTHO05D006999 1.9e-237 825.5 416 100.0
MBI06_g20964_MAGBIO Magnolia biondii HOM05D005536 ORTHO05D006999 2.6e-162 575.9 500 60.4
TAR376G0002 Trochodendron aralioides HOM05D005536 ORTHO05D006999 4.1e-160 568.5 490 61.0
Lj5A254G85 Lonicera japonica HOM05D005536 ORTHO05D006999 2.0e-159 566.2 502 60.0
Dinv19387 Davidia involucrata HOM05D005536 ORTHO05D006999 2.5e-157 559.3 499 58.7
QL02p099453 Quercus lobata HOM05D005536 ORTHO05D006999 2.5e-157 559.3 495 60.0
Prupe.1G573200 Prunus persica HOM05D005536 ORTHO05D006999 9.5e-157 557.4 487 59.5
GSVIVG01023338001 Vitis vinifera HOM05D005536 ORTHO05D006999 1.2e-156 557.0 488 59.8
PSO170G4094 Papaver somniferum HOM05D005536 ORTHO05D006999 1.6e-156 556.6 497 59.2
Manes.10G122900 Manihot esculenta HOM05D005536 ORTHO05D006999 3.6e-156 555.4 498 59.2
PSO017G0725 Papaver somniferum HOM05D005536 ORTHO05D006999 4.7e-156 555.1 497 59.0
CiPaw.05G049900 Carya illinoinensis HOM05D005536 ORTHO05D006999 1.4e-155 553.5 502 59.0
RcHm_v2.0_Chr7g0221201 Rosa chinensis HOM05D005536 ORTHO05D006999 1.8e-155 553.1 490 59.8
Aqoxy5G01212 Aquilegia oxysepala HOM05D005536 ORTHO05D006999 6.8e-155 551.2 504 58.7
Thecc.02G089300 Theobroma cacao HOM05D005536 ORTHO05D006999 1.5e-154 550.1 504 57.7
Hma1.2p1_1108F.1_g257740 Hydrangea macrophylla HOM05D005536 ORTHO05D006999 3.4e-154 548.9 488 59.0
Haze_01749 Corylus avellana HOM05D005536 ORTHO05D006999 5.7e-154 548.1 503 57.7
CANSAT11G0651 Cannabis sativa HOM05D005536 ORTHO05D006999 7.5e-154 547.7 504 56.9
FAN08G1062 Fragaria x ananassa HOM05D005536 ORTHO05D006999 1.3e-153 547.0 488 59.6
Ciclev10000782m.g Citrus clementina HOM05D005536 ORTHO05D006999 1.7e-153 546.6 489 59.1
Ca_00061_v3 Cicer arietinum L. HOM05D005536 ORTHO05D006999 2.8e-153 545.8 499 57.5
Nn1g08381 Nelumbo nucifera HOM05D005536 ORTHO05D006999 2.8e-153 545.8 489 59.3
Duzib132G1177 Durio zibethinus HOM05D005536 ORTHO05D006999 4.9e-153 545.0 491 58.2
FvH4_5g28860 Fragaria vesca HOM05D005536 ORTHO05D006999 4.9e-153 545.0 488 59.4
FAN04G2224 Fragaria x ananassa HOM05D005536 ORTHO05D006999 1.4e-152 543.5 488 59.4
TPR.G2082 Trifolium pratense HOM05D005536 ORTHO05D006999 1.8e-152 543.1 488 57.2
Rhsim11G0127400 Rhododendron simsii HOM05D005536 ORTHO05D006999 3.1e-152 542.3 495 58.4
FAN13G0194 Fragaria x ananassa HOM05D005536 ORTHO05D006999 4.1e-152 542.0 518 56.8
Gohir.A13G035900 Gossypium hirsutum HOM05D005536 ORTHO05D006999 1.6e-151 540.0 505 57.4
VMungo0540G0609 Vigna mungo HOM05D005536 ORTHO05D006999 2.0e-151 539.7 488 57.2
Potri.003G015700 Populus trichocarpa HOM05D005536 ORTHO05D006999 5.9e-151 538.1 488 58.2
ClCG11G000890 Citrullus lanatus HOM05D005536 ORTHO05D006999 1.0e-150 537.3 507 55.8
Cfa005500 Carpinus fangiana HOM05D005536 ORTHO05D006999 1.7e-150 536.6 503 56.7
Eucgr.G00559 Eucalyptus grandis HOM05D005536 ORTHO05D006999 2.9e-150 535.8 488 58.0
vmacro01743 Vaccinium macrocarpon HOM05D005536 ORTHO05D006999 2.9e-150 535.8 500 57.2
Medtr2g006350 Medicago truncatula HOM05D005536 ORTHO05D006999 6.6e-150 534.6 488 56.6
COL.COLO4_11769 Corchorus olitorius HOM05D005536 ORTHO05D006999 8.6e-150 534.3 442 62.9
Gorai.013G038700 Gossypium raimondii HOM05D005536 ORTHO05D006999 1.1e-149 533.9 505 56.8
ATR1136G209 Amborella trichopoda HOM05D005536 ORTHO05D006999 2.5e-149 532.7 509 56.4
Sabra03G0008600 Salix brachista HOM05D005536 ORTHO05D006999 3.3e-149 532.3 511 55.6
Nitab4.5_0000948g0240 Nicotiana tabacum HOM05D005536 ORTHO05D006999 9.5e-149 530.8 488 58.2
Solyc01g103950.4 Solanum lycopersicum HOM05D005536 ORTHO05D006999 9.5e-149 530.8 501 57.3
Psat1g222160 Pisum sativum HOM05D005536 ORTHO05D006999 1.2e-148 530.4 488 55.7
Sed0010884 Sechium edule HOM05D005536 ORTHO05D006999 1.2e-148 530.4 507 55.4
CsaV3_5G012850 Cucumis sativus L. HOM05D005536 ORTHO05D006999 2.1e-148 529.6 488 56.6
DCAR_006692 Daucus carota HOM05D005536 ORTHO05D006999 2.1e-148 529.6 494 56.5
Gohir.D13G034200 Gossypium hirsutum HOM05D005536 ORTHO05D006999 2.1e-148 529.6 505 56.4
MSTRG.20308 Avicennia marina HOM05D005536 ORTHO05D006999 3.6e-148 528.9 489 56.9
Zm00001eb138710 Zea mays HOM05D005536 ORTHO05D006999 6.1e-148 528.1 487 57.7
PGR042G3208 Punica granatum HOM05D005536 ORTHO05D006999 8.0e-148 527.7 488 58.0
MELO3C022605.2 Cucumis melo HOM05D005536 ORTHO05D006999 1.0e-147 527.3 507 54.8
PGSC0003DMG401023772 Solanum tuberosum HOM05D005536 ORTHO05D006999 1.0e-147 527.3 488 58.0
TWI59G0084 Tripterygium wilfordii HOM05D005536 ORTHO05D006999 1.8e-147 526.6 504 55.0
arahy.Tifrunner.gnm1.ann1.DFQ1AC Arachis hypogaea HOM05D005536 ORTHO05D006999 3.0e-147 525.8 498 55.6
Glyma.08G188200 Glycine max HOM05D005536 ORTHO05D006999 3.0e-147 525.8 486 56.8
Sopen01g046340 Solanum pennellii HOM05D005536 ORTHO05D006999 3.0e-147 525.8 501 56.9
Phvul.006G216300 Phaseolus vulgaris HOM05D005536 ORTHO05D006999 4.0e-147 525.4 486 56.2
arahy.Tifrunner.gnm1.ann1.CHH5X5 Arachis hypogaea HOM05D005536 ORTHO05D006999 1.2e-146 523.9 499 55.5
CAN.G798.23 Capsicum annuum HOM05D005536 ORTHO05D006999 1.5e-146 523.5 501 56.5
DCAR_025347 Daucus carota HOM05D005536 ORTHO05D006999 1.5e-146 523.5 487 56.9
Glyma.12G169900 Glycine max HOM05D005536 ORTHO05D006999 2.6e-146 522.7 486 56.0
ECA236G1742 Erigeron canadensis HOM05D005536 ORTHO05D006999 4.4e-146 521.9 504 56.3
Lalb_Chr20g0123601 Lupinus albus HOM05D005536 ORTHO05D006999 4.4e-146 521.9 488 55.5
Peaxi162Scf00011g00635 Petunia axillaris HOM05D005536 ORTHO05D006999 4.4e-146 521.9 488 57.4
SalBow8G1128 Salvia bowleyana HOM05D005536 ORTHO05D004100 4.4e-146 521.9 482 57.3
Lj6g0001247 Lotus japonicus HOM05D005536 ORTHO05D006999 5.7e-146 521.5 488 55.1
Sc18g0006730 Simmondsia chinensis HOM05D005536 ORTHO05D006999 4.9e-145 518.5 501 55.9
Atru.BG.35.p Acer truncatum HOM05D005536 ORTHO05D006999 6.4e-145 518.1 482 57.3
Migut.B00813 Erythranthe guttata HOM05D005536 ORTHO05D006999 6.4e-145 518.1 484 57.2
HanXRQChr16g0512011 Helianthus annuus HOM05D005536 ORTHO05D006999 6.4e-145 518.1 496 56.5
Oeu049828.1 Olea europaea HOM05D005536 ORTHO05D006999 8.3e-145 517.7 491 56.0
Lsat_1_v5_gn_7_79100 Lactuca sativa HOM05D005536 ORTHO05D006999 1.1e-144 517.3 502 55.4
Ah.03g139170 Amaranthus hybridus HOM05D005536 ORTHO05D006999 4.1e-144 515.4 491 56.6
unitig_749.g13511 Utricularia gibba HOM05D005536 ORTHO05D006999 5.9e-143 511.5 505 54.1
Cc02_g22780 Coffea canephora HOM05D005536 ORTHO05D006999 1.3e-142 510.4 491 55.0
AT1G22940 Arabidopsis thaliana HOM05D005536 ORTHO05D006999 3.0e-142 509.2 488 56.1
AL1G36500 Arabidopsis lyrata HOM05D005536 ORTHO05D006999 5.0e-142 508.4 488 56.1
Thhalv10007358m.g Eutrema salsugineum HOM05D005536 ORTHO05D006999 1.5e-141 506.9 488 56.4
Carub.0001s2244 Capsella rubella HOM05D005536 ORTHO05D006999 1.9e-141 506.5 488 56.4
Sp1g20400 Schrenkiella parvula HOM05D005536 ORTHO05D006999 4.3e-141 505.4 488 56.4
BcaB07g32292 Brassica carinata HOM05D005536 ORTHO05D006999 7.3e-141 504.6 488 56.1
BcaC05g26200 Brassica carinata HOM05D005536 ORTHO05D006999 7.3e-141 504.6 488 55.9
C05p22080 Brassica napus HOM05D005536 ORTHO05D006999 7.3e-141 504.6 488 55.9
A09p41800 Brassica napus HOM05D005536 ORTHO05D006999 1.6e-140 503.4 488 56.1
BraA09t39668Z Brassica rapa HOM05D005536 ORTHO05D006999 2.8e-140 502.7 491 55.6
CSS0004244 Camellia sinensis var. sinensis HOM05D005536 ORTHO05D006999 4.7e-140 501.9 463 57.5
BolC5t30904H Brassica oleracea HOM05D005536 ORTHO05D006999 6.2e-140 501.5 488 55.5
AUR62003134 Chenopodium quinoa HOM05D005536 ORTHO05D006999 1.8e-139 500.0 488 55.7
SEGI_00443 Sequoiadendron giganteum HOM05D005536 ORTHO05D006999 1.8e-139 500.0 488 54.7
CARHR023320 Cardamine hirsuta HOM05D005536 ORTHO05D006999 1.5e-138 496.9 488 54.9
Actinidia39023 Actinidia chinensis HOM05D005536 ORTHO05D006999 7.5e-138 494.6 485 56.5
MD15G1428400 Malus domestica HOM05D005536 ORTHO05D006999 1.7e-137 493.4 550 51.8
Aa31LG7G6950 Aethionema arabicum HOM05D005536 ORTHO05D006999 3.7e-137 492.3 484 56.0
THA.LOC104806870 Tarenaya hassleriana HOM05D005536 ORTHO05D006999 4.1e-136 488.8 482 56.2
AUR62007953 Chenopodium quinoa HOM05D005536 ORTHO05D006999 5.0e-134 481.9 470 54.7
HPP92_027057 Vanilla planifolia HOM05D005536 ORTHO05D006999 1.7e-126 456.8 514 49.4
FAN18G3948 Fragaria x ananassa HOM05D005536 ORTHO05D006999 2.3e-123 446.4 324 69.1
HPP92_011418 Vanilla planifolia HOM05D005536 ORTHO05D006999 3.1e-123 446.0 484 50.4
Atru.chr6.551 Acer truncatum HOM05D005536 ORTHO05D006999 2.0e-122 443.4 435 54.3
SGA_v2.0_scaffold110G31339 Striga asiatica HOM05D005536 ORTHO05D006999 9.9e-122 441.0 614 41.7
Pp3c1_39340 Physcomitrium patens HOM05D005536 ORTHO05D006999 1.6e-119 433.7 489 49.5
Mapoly0071s0067 Marchantia polymorpha HOM05D005536 ORTHO05D006999 9.6e-117 424.5 505 47.3
Nitab4.5_0002698g0120 Nicotiana tabacum HOM05D005536 ORTHO05D006999 3.1e-115 419.5 346 61.3
SMO244G0051 Selaginella moellendorffii HOM05D005536 ORTHO05D006999 6.9e-115 418.3 487 47.8
Hund15496 Selenicereus undatus HOM05D005536 ORTHO05D006999 1.3e-100 370.9 260 67.7
Zm00001eb264810 Zea mays HOM05D005536 ORTHO05D006999 4.5e-98 362.5 275 66.9
AagrBONN_evm.TU.Sc2ySwM_228.4801 Anthoceros agrestis HOM05D005536 ORTHO05D006999 4.0e-91 339.3 345 53.3
Hma1.2p1_1108F.1_g257730 Hydrangea macrophylla HOM05D005536 ORTHO05D006999 1.0e-78 298.1 320 52.8
Cre08.g365600 Chlamydomonas reinhardtii HOM05D005536 ORTHO05D006999 1.8e-75 287.3 560 34.6
Hma1.2p1_3213F.1_g334040 Hydrangea macrophylla HOM05D005536 ORTHO05D006999 5.7e-69 265.8 355 47.0
Cpa.g.c34456.1 Carica papaya HOM05D005536 ORTHO05D006999 1.4e-67 261.2 169 71.6
MD08G1236400 Malus domestica HOM05D005536 ORTHO05D006999 2.6e-66 256.9 223 59.2
Actinidia00197 Actinidia chinensis HOM05D005536 ORTHO05D006999 5.9e-66 255.8 372 43.8
PGR044G0806 Punica granatum HOM05D005536 ORTHO05D006999 6.1e-55 219.2 153 69.3
Actinidia27730 Actinidia chinensis HOM05D005536 ORTHO05D006999 6.3e-52 209.1 132 72.7
Cpa.g.sc31.109 Carica papaya HOM05D005536 ORTHO05D006999 4.8e-44 183.0 129 73.6
CBR_g6345 Chara braunii HOM05D005536 ORTHO05D006999 3.5e-42 176.8 148 57.4
Ca_00038_v3 Cicer arietinum L. HOM05D005536 ORTHO05D006999 5.0e-41 172.9 128 65.6
EL10Ac6g14966 Beta vulgaris HOM05D005536 ORTHO05D006999 1.5e-40 171.4 118 66.9
Os12g0192500 Oryza sativa ssp. japonica HOM05D005536 ORTHO05D006999 2.4e-35 154.1 98 73.5
Cfa024720 Carpinus fangiana HOM05D005536 ORTHO05D006999 4.1e-35 153.3 215 42.3
MD15G1428300 Malus domestica HOM05D005536 ORTHO05D006999 1.0e-33 148.7 99 76.8
Cpa.g.sc31.106 Carica papaya HOM05D005536 ORTHO05D006999 2.9e-33 147.1 93 78.5
CsaV3_5G012690 Cucumis sativus L. HOM05D005536 ORTHO05D006999 1.9e-32 144.4 170 45.3
CsaV3_5G012700 Cucumis sativus L. HOM05D005536 ORTHO05D006999 2.8e-31 140.6 129 56.6
CBR_g6347 Chara braunii HOM05D000019 ORTHO05D000800 6.1e-31 139.4 175 44.0
Cpa.g.sc31.103 Carica papaya HOM05D005536 ORTHO05D006999 1.4e-22 111.7 119 51.3
MD08G1236300 Malus domestica HOM05D005536 ORTHO05D006999 2.3e-22 110.9 74 74.3
Actinidia27729 Actinidia chinensis HOM05D005536 ORTHO05D006999 8.9e-22 109.0 83 66.3
CSS0010000 Camellia sinensis var. sinensis HOM05D005536 ORTHO05D006999 1.3e-20 105.1 77 67.5
CSS0024456 Camellia sinensis var. sinensis HOM05D005536 ORTHO05D006999 1.3e-20 105.1 77 67.5
Actinidia02848 Actinidia chinensis HOM05D005536 ORTHO05D006999 3.0e-17 94.0 79 62.0
Actinidia02850 Actinidia chinensis HOM05D005536 ORTHO05D006999 6.6e-17 92.8 142 42.3
Haze_27076 Corylus avellana HOM05D005536 ORTHO05D006999 9.5e-16 89.0 380 23.4
ECA236G5131 Erigeron canadensis HOM05D005536 ORTHO05D006999 9.5e-16 89.0 62 67.7
Cpa.g.sc31.102 Carica papaya HOM05D005536 ORTHO05D006999 3.7e-12 77.0 50 74.0


User provided reference genes

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