Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G3479 Ceratophyllum demersum HOM05D004901 ORTHO05D005592 0.0e+00 2347.0 1189 100.0
TAR628G1246 Trochodendron aralioides HOM05D004901 ORTHO05D005592 9.4e-234 814.7 1379 41.8
Cfa008133 Carpinus fangiana HOM05D004901 ORTHO05D005592 1.8e-232 810.4 1347 41.8
Nn5g27609 Nelumbo nucifera HOM05D004901 ORTHO05D005592 3.3e-231 806.2 1457 39.9
Manes.18G103400 Manihot esculenta HOM05D004901 ORTHO05D005592 4.1e-229 799.3 1339 41.2
PSO782G5557 Papaver somniferum HOM05D004901 ORTHO05D005592 1.4e-224 784.3 1364 40.5
PSO170G4536 Papaver somniferum HOM05D004901 ORTHO05D005592 5.7e-223 778.9 1357 40.6
Ciclev10000033m.g Citrus clementina HOM05D004901 ORTHO05D005592 1.3e-219 767.7 1380 40.9
Gohir.A13G120700 Gossypium hirsutum HOM05D004901 ORTHO05D005592 6.1e-217 758.8 1348 41.1
Aqoxy6G00145 Aquilegia oxysepala HOM05D004901 ORTHO05D005592 1.4e-216 757.7 1372 39.8
Prupe.1G551100 Prunus persica HOM05D004901 ORTHO05D005592 2.3e-216 756.9 1337 40.5
Oeu021225.1 Olea europaea HOM05D004901 ORTHO05D005592 3.0e-216 756.5 1342 40.3
CSS0009856 Camellia sinensis var. sinensis HOM05D004901 ORTHO05D005592 4.0e-216 756.1 1048 45.0
CANSAT56G0037 Cannabis sativa HOM05D004901 ORTHO05D005592 9.8e-215 751.5 1352 40.3
Gorai.013G139300 Gossypium raimondii HOM05D004901 ORTHO05D005592 2.4e-213 746.9 1339 41.0
GSVIVG01034779001 Vitis vinifera HOM05D004901 ORTHO05D005592 1.2e-212 744.6 1415 38.9
QL09p004928 Quercus lobata HOM05D004901 ORTHO05D005592 4.5e-212 742.7 1353 40.2
Gohir.D13G124700 Gossypium hirsutum HOM05D004901 ORTHO05D005592 5.9e-212 742.3 1329 40.7
Eucgr.F02585 Eucalyptus grandis HOM05D004901 ORTHO05D005592 2.1e-209 733.8 1323 40.3
THA.LOC104816395 Tarenaya hassleriana HOM05D004901 ORTHO05D005592 3.0e-208 729.9 1334 39.3
Ah.04g162840 Amaranthus hybridus HOM05D004901 ORTHO05D005592 4.5e-204 716.1 1335 39.3
MD15G1404400 Malus domestica HOM05D004901 ORTHO05D005592 1.7e-203 714.1 1343 39.5
PGR042G2824 Punica granatum HOM05D004901 ORTHO05D005592 1.5e-202 711.1 1334 39.4
Potri.013G109600 Populus trichocarpa HOM05D004901 ORTHO05D005592 3.3e-202 709.9 1297 40.4
FvH4_7g03750 Fragaria vesca HOM05D004901 ORTHO05D005592 4.3e-202 709.5 1346 38.1
Carub.0001s3315 Capsella rubella HOM05D004901 ORTHO05D005592 6.1e-201 705.7 1315 37.9
Cc00_g06540 Coffea canephora HOM05D004901 ORTHO05D005592 1.4e-200 704.5 1329 39.7
Haze_13904 Corylus avellana HOM05D004901 ORTHO05D005592 1.8e-200 704.1 1119 41.9
FAN06G0910 Fragaria x ananassa HOM05D004901 ORTHO05D005592 3.4e-199 699.9 1357 37.4
Thecc.08G186400 Theobroma cacao HOM05D004901 ORTHO05D005592 4.4e-199 699.5 1122 42.2
Sed0000511 Sechium edule HOM05D004901 ORTHO05D005592 5.7e-199 699.1 1339 39.4
MELO3C008073.2 Cucumis melo HOM05D004901 ORTHO05D005592 3.7e-198 696.4 1310 39.5
FAN03G3444 Fragaria x ananassa HOM05D004901 ORTHO05D005592 4.9e-198 696.0 1367 37.7
AT1G35530 Arabidopsis thaliana HOM05D004901 ORTHO05D005592 1.1e-197 694.9 1312 37.7
A05p23720 Brassica napus HOM05D004901 ORTHO05D005592 4.6e-196 689.5 1340 37.0
Migut.C01287 Erythranthe guttata HOM05D004901 ORTHO05D005592 5.9e-196 689.1 1310 38.8
Hund16786 Selenicereus undatus HOM05D004901 ORTHO05D005592 7.8e-196 688.7 1336 38.7
Lalb_Chr01g0000031 Lupinus albus HOM05D004901 ORTHO05D005592 1.1e-194 684.9 1312 38.0
BcaC05g27729 Brassica carinata HOM05D004901 ORTHO05D005592 1.9e-194 684.1 1319 37.3
C05p37130 Brassica napus HOM05D004901 ORTHO05D005592 1.9e-194 684.1 1319 37.3
Thhalv10002370m.g Eutrema salsugineum HOM05D004901 ORTHO05D005592 3.3e-194 683.3 1335 37.8
BraA05t21240Z Brassica rapa HOM05D004901 ORTHO05D005592 3.6e-193 679.9 1356 36.6
Thhalv10001810m.g Eutrema salsugineum HOM05D004901 ORTHO05D005592 1.0e-192 678.3 1329 37.8
ATR0749G100 Amborella trichopoda HOM05D004901 ORTHO05D005592 1.4e-192 677.9 1327 38.2
SGA_v2.0_scaffold24G10583 Striga asiatica HOM05D004901 ORTHO05D005592 2.3e-192 677.2 1360 37.2
BolC5t32466H Brassica oleracea HOM05D004901 ORTHO05D005592 1.5e-191 674.5 1360 36.8
AL1G50380 Arabidopsis lyrata HOM05D004901 ORTHO05D005592 9.8e-191 671.8 1310 37.3
Sp1g30300 Schrenkiella parvula HOM05D004901 ORTHO05D005592 9.8e-191 671.8 1297 37.1
Sopen11g010870 Solanum pennellii HOM05D004901 ORTHO05D005592 2.2e-190 670.6 1362 37.8
SalBow7G4726 Salvia bowleyana HOM05D004901 ORTHO05D005592 1.1e-189 668.3 1312 37.4
Duzib177G0087 Durio zibethinus HOM05D004901 ORTHO05D005592 1.9e-189 667.5 1238 40.8
Aa31LG6G8790 Aethionema arabicum HOM05D004901 ORTHO05D005592 2.4e-189 667.2 1282 38.5
CsaV3_2G033030 Cucumis sativus L. HOM05D004901 ORTHO05D005592 4.1e-189 666.4 1120 40.9
Lj3g0009157 Lotus japonicus HOM05D004901 ORTHO05D005592 4.1e-189 666.4 1323 37.6
CAN.G259.2 Capsicum annuum HOM05D004901 ORTHO05D005592 5.4e-189 666.0 1334 38.3
Phvul.011G000500 Phaseolus vulgaris HOM05D004901 ORTHO05D005592 1.6e-188 664.5 1325 38.3
Psat0s1585g0040 Pisum sativum HOM05D004901 ORTHO05D005592 4.6e-188 662.9 1320 38.0
Glyma.08G238200 Glycine max HOM05D004901 ORTHO05D005592 3.0e-187 660.2 1321 37.1
BcaB03g13661 Brassica carinata HOM05D004901 ORTHO05D005592 5.0e-187 659.4 1321 37.0
EL10Ac1g00109 Beta vulgaris HOM05D004901 ORTHO05D005592 1.6e-185 654.4 1362 37.3
TPR.G26106 Trifolium pratense HOM05D004901 ORTHO05D005592 3.2e-181 640.2 1351 36.3
vmacro00754 Vaccinium macrocarpon HOM05D004901 ORTHO05D005592 1.6e-180 637.9 658 54.4
Rhsim11G0056100 Rhododendron simsii HOM05D004901 ORTHO05D005592 6.0e-180 636.0 1256 37.6
Lsat_1_v5_gn_8_141780 Lactuca sativa HOM05D004901 ORTHO05D005592 2.6e-175 620.5 1292 36.9
arahy.Tifrunner.gnm1.ann1.0Z9JWZ Arachis hypogaea HOM05D004901 ORTHO05D005592 3.4e-175 620.2 1291 36.6
arahy.Tifrunner.gnm1.ann1.CA6GZM Arachis hypogaea HOM05D004901 ORTHO05D005592 1.9e-173 614.4 1304 35.8
HanXRQChr17g0559191 Helianthus annuus HOM05D004901 ORTHO05D005592 9.2e-173 612.1 1312 36.7
COL.COLO4_12801 Corchorus olitorius HOM05D004901 ORTHO05D005592 1.0e-163 582.0 1546 33.0
DCAR_011526 Daucus carota HOM05D004901 ORTHO05D005592 5.6e-162 576.2 1351 34.6
Medtr1g103260 Medicago truncatula HOM05D004901 ORTHO05D005592 3.6e-161 573.5 1292 35.4
SHI09022 Sapria himalayana HOM05D004901 ORTHO05D005592 2.0e-159 567.8 1285 35.3
CARHR034280 Cardamine hirsuta HOM05D004901 ORTHO05D005592 2.5e-154 550.8 1099 36.0
Pp3c20_9530 Physcomitrium patens HOM05D004901 ORTHO05D005592 6.0e-148 529.6 1391 32.1
AUR62023519 Chenopodium quinoa HOM05D004901 ORTHO05D005592 1.7e-142 511.5 1448 32.0
Zm00001eb201140 Zea mays HOM05D004901 ORTHO05D005592 6.5e-142 509.6 1321 33.2
Sc23g0001380 Simmondsia chinensis HOM05D004901 ORTHO05D005592 1.4e-141 508.4 436 62.4
Atru.chr13.2409 Acer truncatum HOM05D004901 ORTHO05D005592 3.5e-140 503.8 437 61.1
Mapoly0001s0472 Marchantia polymorpha HOM05D004901 ORTHO05D005592 5.1e-139 500.0 602 47.2
AagrBONN_evm.TU.Sc2ySwM_228.534 Anthoceros agrestis HOM05D004901 ORTHO05D005592 1.6e-132 478.4 1484 31.7
RcHm_v2.0_Chr7g0228881 Rosa chinensis HOM05D004901 ORTHO05D005592 2.1e-132 478.0 436 58.0
Solyc11g020760.3 Solanum lycopersicum HOM05D004901 ORTHO05D005592 5.7e-130 469.9 490 53.7
Dinv02587 Davidia involucrata HOM05D004901 ORTHO05D005592 1.7e-126 458.4 402 59.7
Nitab4.5_0003010g0060 Nicotiana tabacum HOM05D004901 ORTHO05D005592 7.9e-124 449.5 471 52.9
Aqoxy4G02416 Aquilegia oxysepala HOM05D004901 ORTHO05D005592 1.0e-123 449.1 506 50.2
AUR62004624 Chenopodium quinoa HOM05D004901 ORTHO05D005592 5.0e-118 430.3 438 54.1
MBI17_g21472_MAGBIO Magnolia biondii HOM05D004901 ORTHO05D005592 1.4e-117 428.7 995 36.3
Peaxi162Scf00391g00531 Petunia axillaris HOM05D004901 ORTHO05D005592 1.4e-115 422.2 454 51.8
Nitab4.5_0000167g0280 Nicotiana tabacum HOM05D004901 ORTHO05D005592 8.2e-113 412.9 454 50.7
unitig_747.g21475 Utricularia gibba HOM05D004901 ORTHO05D005592 4.1e-112 410.6 429 53.1
HPP92_004437 Vanilla planifolia HOM05D004901 ORTHO05D005592 4.7e-108 397.1 436 51.6
Sabra13G0094500 Salix brachista HOM05D004901 ORTHO05D005592 4.5e-103 380.6 360 55.6
ECA233G3640 Erigeron canadensis HOM05D004901 ORTHO05D000001 6.3e-97 360.1 391 51.2
ClCG11G008690 Citrullus lanatus HOM05D004901 ORTHO05D005592 2.9e-94 351.3 339 55.8
MBI17_g46833_MAGBIO Magnolia biondii HOM05D004901 ORTHO05D005592 2.3e-83 315.1 298 57.4
Cpa.g.sc66.25 Carica papaya HOM05D004901 ORTHO05D005592 8.9e-75 286.6 281 54.4
VMungo1127G0411 Vigna mungo HOM05D004901 ORTHO05D005592 3.5e-71 274.6 329 47.1
Sc23g0001370 Simmondsia chinensis HOM05D004901 ORTHO05D005592 2.5e-69 268.5 872 31.2
SEGI_29563 Sequoiadendron giganteum HOM05D004901 ORTHO05D005592 1.8e-67 262.3 257 57.6
Lj7C288T6 Lonicera japonica HOM05D004901 ORTHO05D005592 2.3e-67 261.9 841 31.4
Atru.chr13.2408 Acer truncatum HOM05D004901 ORTHO05D005592 1.6e-63 249.2 868 30.2
MSTRG.1544 Avicennia marina HOM05D004901 ORTHO05D005592 4.6e-63 247.7 899 30.1
RcHm_v2.0_Chr7g0228871 Rosa chinensis HOM05D004901 ORTHO05D005592 5.4e-56 224.2 863 29.2
Ca_19714_v3 Cicer arietinum L. HOM05D004901 ORTHO05D005592 2.5e-53 215.3 908 28.2
Os11g0180600 Oryza sativa ssp. japonica HOM05D004901 ORTHO05D005592 1.5e-50 206.1 292 43.8
VMungo1127G1203 Vigna mungo HOM05D004901 ORTHO05D005592 1.5e-50 206.1 928 28.6
SEGI_09674 Sequoiadendron giganteum HOM05D004901 ORTHO05D005592 1.3e-49 203.0 281 44.1
Dinv02586 Davidia involucrata HOM05D004901 ORTHO05D005592 1.7e-49 202.6 839 28.6
HPP92_004438 Vanilla planifolia HOM05D004901 ORTHO05D005592 1.3e-46 193.0 868 26.8
CiPaw.03G019200 Carya illinoinensis HOM05D004901 ORTHO05D005592 3.6e-44 184.9 231 46.3
Haze_26138 Corylus avellana HOM05D004901 ORTHO05D005592 8.1e-44 183.7 557 29.3
PRCOL_00002915 Prasinoderma coloniale HOM05D004901 ORTHO05D005592 3.1e-43 181.8 512 28.7
ClCG11G008660 Citrullus lanatus HOM05D004901 ORTHO05D005592 1.3e-41 176.4 878 28.6
MBI17_g38773_MAGBIO Magnolia biondii HOM05D004901 ORTHO05D005592 1.3e-36 159.8 171 56.7
Cpa.g.sc66.23 Carica papaya HOM05D004901 ORTHO05D005592 4.8e-36 157.9 636 29.4
CiPaw.03G019300 Carya illinoinensis HOM05D004901 ORTHO05D005592 4.0e-35 154.8 641 30.7
MCO11G659 Micromonas commoda HOM05D004901 ORTHO05D005592 3.4e-34 151.8 671 25.3
Cre03.g208833 Chlamydomonas reinhardtii HOM05D004901 ORTHO05D005592 4.2e-32 144.8 646 23.7
Nitab4.5_0003010g0040 Nicotiana tabacum HOM05D004901 ORTHO05D005592 3.5e-31 141.7 638 27.3
Peaxi162Scf00391g00532 Petunia axillaris HOM05D004901 ORTHO05D005592 1.3e-30 139.8 627 29.3
Solyc11g020770.3 Solanum lycopersicum HOM05D004901 ORTHO05D005592 1.8e-30 139.4 678 28.2
vmacro00755 Vaccinium macrocarpon HOM05D004901 ORTHO05D005592 1.4e-27 129.8 596 28.7
Rhsim11G0056200 Rhododendron simsii HOM05D004901 ORTHO05D005592 2.4e-27 129.0 65 93.8
AL1G60360 Arabidopsis lyrata HOM05D004901 ORTHO05D005592 5.5e-24 117.9 66 84.8
Nitab4.5_0000167g0270 Nicotiana tabacum HOM05D004901 ORTHO05D005592 7.9e-23 114.0 730 26.3
Nitab4.5_0003010g0050 Nicotiana tabacum HOM05D004901 ORTHO05D005592 1.8e-22 112.8 63 84.1
Peaxi162Scf00391g00530 Petunia axillaris HOM05D004901 ORTHO05D005592 1.8e-22 112.8 63 82.5
Potri.013G110200 Populus trichocarpa HOM05D004901 ORTHO05D005592 2.3e-22 112.5 78 71.8
Prupe.2G019600 Prunus persica HOM05D004901 ORTHO05D005592 3.9e-22 111.7 180 40.6
Zm00001eb384980 Zea mays HOM05D004901 ORTHO05D005592 5.1e-22 111.3 59 84.7
FAN10G2375 Fragaria x ananassa HOM05D004901 ORTHO05D005592 3.0e-14 85.5 102 52.0
GSVIVG01012489001 Vitis vinifera HOM05D004901 ORTHO05D005592 2.0e-13 82.8 58 65.5
FAN03G2849 Fragaria x ananassa HOM05D004901 ORTHO05D005592 1.3e-12 80.1 75 62.7
ClCG11G008680 Citrullus lanatus HOM05D004901 ORTHO05D005592 1.7e-12 79.7 81 56.8
FAN01G2229 Fragaria x ananassa HOM05D004901 ORTHO05D005592 8.2e-12 77.4 39 89.7
Duzib177G1004 Durio zibethinus HOM05D004901 ORTHO05D005592 1.8e-11 76.3 39 87.2
Nitab4.5_0000167g0300 Nicotiana tabacum HOM05D004901 ORTHO05D005592 9.1e-11 73.9 36 94.4
FvH4_7g05830 Fragaria vesca HOM05D004901 ORTHO05D005592 2.6e-10 72.4 61 59.0
Aqoxy4G02415 Aquilegia oxysepala HOM05D004901 ORTHO05D005592 1.7e-09 69.7 386 25.1
FAN18G0186 Fragaria x ananassa HOM05D004901 ORTHO05D005592 7.2e-08 64.3 37 81.1
ECA232G2408 Erigeron canadensis HOM05D000399 ORTHO05D000304 1.0e-06 60.5 412 24.8
Nitab4.5_0001003g0020 Nicotiana tabacum HOM05D000399 ORTHO05D000304 2.3e-06 59.3 475 23.6


User provided reference genes

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