Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G0954 Ceratophyllum demersum HOM05D004503 ORTHO05D005460 2.3e-246 855.1 433 100.0
TAR629G1355 Trochodendron aralioides HOM05D004503 ORTHO05D005460 2.2e-212 742.3 432 85.9
Thecc.01G170000 Theobroma cacao HOM05D004503 ORTHO05D005460 8.5e-209 730.3 433 84.5
TWI14G0297 Tripterygium wilfordii HOM05D004503 ORTHO05D005460 3.2e-208 728.4 433 84.8
Gohir.D07G189800 Gossypium hirsutum HOM05D004503 ORTHO05D005460 9.4e-208 726.9 433 84.1
MBI10_g21107_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 2.1e-207 725.7 433 85.5
Atru.chr6.2055 Acer truncatum HOM05D004503 ORTHO05D005460 3.6e-207 724.9 433 84.8
Medtr3g046640 Medicago truncatula HOM05D004503 ORTHO05D005460 3.6e-207 724.9 433 84.5
Gorai.001G211500 Gossypium raimondii HOM05D004503 ORTHO05D005460 4.7e-207 724.5 431 83.8
Ca_14599_v3 Cicer arietinum L. HOM05D004503 ORTHO05D005460 1.4e-206 723.0 433 84.3
Gohir.A07G183000 Gossypium hirsutum HOM05D004503 ORTHO05D005460 1.8e-206 722.6 433 84.1
Medtr0071s0030 Medicago truncatula HOM05D004503 ORTHO05D005460 2.3e-206 722.2 433 84.3
Actinidia12541 Actinidia chinensis HOM05D004503 ORTHO05D005460 3.0e-206 721.8 432 83.3
Migut.M00558 Erythranthe guttata HOM05D004503 ORTHO05D005460 3.0e-206 721.8 433 82.9
Sabra05G0155000 Salix brachista HOM05D004503 ORTHO05D005460 3.9e-206 721.5 431 83.3
Psat5g185680 Pisum sativum HOM05D004503 ORTHO05D005460 2.6e-205 718.8 433 83.8
Dinv07955 Davidia involucrata HOM05D004503 ORTHO05D005460 3.3e-205 718.4 432 84.0
Potri.005G204400 Populus trichocarpa HOM05D004503 ORTHO05D005460 4.4e-205 718.0 433 82.4
Prupe.3G176600 Prunus persica HOM05D004503 ORTHO05D005460 4.4e-205 718.0 433 82.9
Glyma.18G109800 Glycine max HOM05D004503 ORTHO05D005460 5.7e-205 717.6 430 83.5
QL01p017640 Quercus lobata HOM05D004503 ORTHO05D005460 5.7e-205 717.6 467 78.8
MSTRG.6739 Avicennia marina HOM05D004503 ORTHO05D005460 7.4e-205 717.2 433 82.9
GSVIVG01020844001 Vitis vinifera HOM05D004503 ORTHO05D005460 1.7e-204 716.1 425 84.7
Lj1C677T5 Lonicera japonica HOM05D004503 ORTHO05D005460 2.8e-204 715.3 433 83.6
Glyma.08G307900 Glycine max HOM05D004503 ORTHO05D005460 6.3e-204 714.1 430 83.0
SGA_v2.0_scaffold70G23615 Striga asiatica HOM05D004503 ORTHO05D005460 6.3e-204 714.1 433 82.0
CiPaw.13G152400 Carya illinoinensis HOM05D004503 ORTHO05D005460 8.2e-204 713.8 433 83.8
VMungo0647G0468 Vigna mungo HOM05D004503 ORTHO05D005460 1.1e-203 713.4 430 83.0
Phvul.006G022400 Phaseolus vulgaris HOM05D004503 ORTHO05D005460 1.8e-203 712.6 430 82.8
Lj6g0014906 Lotus japonicus HOM05D004503 ORTHO05D005460 2.4e-203 712.2 433 82.4
Ciclev10030701m.g Citrus clementina HOM05D004503 ORTHO05D005460 3.1e-203 711.8 433 83.4
Manes.02G088300 Manihot esculenta HOM05D004503 ORTHO05D005460 4.1e-203 711.4 433 83.1
Potri.002G057800 Populus trichocarpa HOM05D004503 ORTHO05D005460 7.0e-203 710.7 433 82.7
MD17G1136200 Malus domestica HOM05D004503 ORTHO05D005460 9.1e-203 710.3 425 83.3
MELO3C026971.2 Cucumis melo HOM05D004503 ORTHO05D005460 1.2e-202 709.9 433 82.2
PSO675G5402 Papaver somniferum HOM05D004503 ORTHO05D005460 1.2e-202 709.9 432 82.6
PGR042G1526 Punica granatum HOM05D004503 ORTHO05D005460 1.5e-202 709.5 433 82.7
arahy.Tifrunner.gnm1.ann1.S01VYL Arachis hypogaea HOM05D004503 ORTHO05D005460 4.5e-202 708.0 433 82.2
CANSAT64G0633 Cannabis sativa HOM05D004503 ORTHO05D005460 7.7e-202 707.2 433 82.4
arahy.Tifrunner.gnm1.ann1.96CX7H Arachis hypogaea HOM05D004503 ORTHO05D005460 1.0e-201 706.8 433 82.0
Lalb_Chr07g0191281 Lupinus albus HOM05D004503 ORTHO05D005460 2.9e-201 705.3 430 82.1
COL.COLO4_08894 Corchorus olitorius HOM05D004503 ORTHO05D005460 8.5e-201 703.7 449 80.0
CsaV3_4G031940 Cucumis sativus L. HOM05D004503 ORTHO05D005460 1.1e-200 703.4 433 81.1
HanXRQChr13g0387771 Helianthus annuus HOM05D004503 ORTHO05D005460 1.9e-200 702.6 433 82.2
ECA233G4498 Erigeron canadensis HOM05D004503 ORTHO05D005460 7.2e-200 700.7 433 81.5
THA.LOC104826541 Tarenaya hassleriana HOM05D004503 ORTHO05D005460 2.7e-199 698.7 433 80.8
Aqoxy1G01732 Aquilegia oxysepala HOM05D004503 ORTHO05D005460 8.0e-199 697.2 432 80.3
Nitab4.5_0002251g0070 Nicotiana tabacum HOM05D004503 ORTHO05D005460 1.8e-198 696.0 433 81.1
DCAR_013322 Daucus carota HOM05D004503 ORTHO05D005460 3.9e-198 694.9 430 82.1
Sed0003027 Sechium edule HOM05D004503 ORTHO05D005460 5.2e-198 694.5 433 80.1
AUR62026613 Chenopodium quinoa HOM05D004503 ORTHO05D005460 6.7e-198 694.1 432 80.6
Ah.05g168350 Amaranthus hybridus HOM05D004503 ORTHO05D005460 8.8e-198 693.7 432 80.1
Duzib138G1342 Durio zibethinus HOM05D004503 ORTHO05D005460 1.1e-197 693.3 433 81.3
Cc05_g09730 Coffea canephora HOM05D004503 ORTHO05D005460 1.1e-195 686.8 433 80.1
Sc09g0009430 Simmondsia chinensis HOM05D004503 ORTHO05D005460 2.4e-195 685.6 432 80.3
EL10Ac1g01630 Beta vulgaris HOM05D004503 ORTHO05D005460 3.1e-195 685.3 432 79.2
Lsat_1_v5_gn_8_31680 Lactuca sativa HOM05D004503 ORTHO05D005460 3.1e-195 685.3 430 79.8
AUR62034921 Chenopodium quinoa HOM05D004503 ORTHO05D005460 7.0e-195 684.1 432 79.4
Oeu020048.5 Olea europaea HOM05D004503 ORTHO05D005460 7.0e-195 684.1 462 75.8
Aa31LG5G23690 Aethionema arabicum HOM05D004503 ORTHO05D005460 3.5e-194 681.8 432 78.7
ClCG11G016490 Citrullus lanatus HOM05D004503 ORTHO05D005460 4.5e-194 681.4 433 79.4
CSS0024997 Camellia sinensis var. sinensis HOM05D004503 ORTHO05D005460 7.7e-194 680.6 447 78.5
CAN.G585.22 Capsicum annuum HOM05D004503 ORTHO05D005460 1.7e-193 679.5 433 79.7
HPP92_024264 Vanilla planifolia HOM05D004503 ORTHO05D005460 1.7e-193 679.5 430 78.6
ATR0772G123 Amborella trichopoda HOM05D004503 ORTHO05D005460 2.2e-193 679.1 432 78.5
Solyc07g056220.3 Solanum lycopersicum HOM05D004503 ORTHO05D005460 2.2e-193 679.1 433 79.0
Sopen07g029580 Solanum pennellii HOM05D004503 ORTHO05D005460 3.8e-193 678.3 433 78.8
Peaxi162Scf00111g00222 Petunia axillaris HOM05D004503 ORTHO05D005460 5.5e-192 674.5 497 71.2
Hund26670 Selenicereus undatus HOM05D004503 ORTHO05D005460 1.2e-191 673.3 467 74.5
Cpa.g.sc648.4 Carica papaya HOM05D004503 ORTHO05D005460 2.7e-191 672.2 434 79.3
Nn4g24335 Nelumbo nucifera HOM05D004503 ORTHO05D005460 1.4e-190 669.8 433 79.0
vmacro08730 Vaccinium macrocarpon HOM05D004503 ORTHO05D005460 1.4e-190 669.8 507 69.6
RcHm_v2.0_Chr2g0152001 Rosa chinensis HOM05D004503 ORTHO05D005460 6.7e-190 667.5 449 75.5
Thhalv10016232m.g Eutrema salsugineum HOM05D004503 ORTHO05D005460 2.6e-189 665.6 434 77.9
AL4G35000 Arabidopsis lyrata HOM05D004503 ORTHO05D005460 5.7e-189 664.5 434 77.6
BcaC01g05572 Brassica carinata HOM05D004503 ORTHO05D005460 1.7e-188 662.9 434 77.4
C03p24750 Brassica napus HOM05D004503 ORTHO05D005460 1.7e-188 662.9 434 77.4
BolC3t14864H Brassica oleracea HOM05D004503 ORTHO05D005460 1.7e-188 662.9 434 77.4
Carub.0004s1999 Capsella rubella HOM05D004503 ORTHO05D005460 2.2e-188 662.5 434 77.2
Sp4g20340 Schrenkiella parvula HOM05D004503 ORTHO05D005460 3.7e-188 661.8 434 77.4
CARHR132590 Cardamine hirsuta HOM05D004503 ORTHO05D005460 1.4e-187 659.8 434 77.0
FAN02G3131 Fragaria x ananassa HOM05D004503 ORTHO05D005460 1.8e-187 659.4 449 75.1
A03p21010 Brassica napus HOM05D004503 ORTHO05D005460 2.4e-187 659.1 434 77.0
BraA03t11340Z Brassica rapa HOM05D004503 ORTHO05D005460 2.4e-187 659.1 434 77.0
FAN05G2445 Fragaria x ananassa HOM05D004503 ORTHO05D005460 2.4e-187 659.1 449 75.1
FAN14G5858 Fragaria x ananassa HOM05D004503 ORTHO05D005460 3.1e-187 658.7 449 74.8
AT2G38020 Arabidopsis thaliana HOM05D004503 ORTHO05D005460 5.3e-187 657.9 434 77.2
FvH4_6g38590 Fragaria vesca HOM05D004503 ORTHO05D005460 7.0e-187 657.5 449 74.8
FAN09G1308 Fragaria x ananassa HOM05D004503 ORTHO05D005460 1.0e-185 653.7 449 74.4
SEGI_01586 Sequoiadendron giganteum HOM05D004503 ORTHO05D005460 4.8e-180 634.8 430 73.7
Cfa009838 Carpinus fangiana HOM05D004503 ORTHO05D005460 6.3e-180 634.4 433 76.2
Os01g0666800 Oryza sativa ssp. japonica HOM05D004503 ORTHO05D005460 4.5e-178 628.2 435 74.7
HanXRQChr13g0403751 Helianthus annuus HOM05D004503 ORTHO05D005460 2.9e-177 625.5 376 83.0
HPP92_024256 Vanilla planifolia HOM05D004503 ORTHO05D005460 1.9e-176 622.9 429 74.1
BcaB01g03734 Brassica carinata HOM05D004503 ORTHO05D005460 9.5e-176 620.5 446 73.3
Rhsim12G0009900 Rhododendron simsii HOM05D004503 ORTHO05D005460 6.1e-175 617.8 461 70.3
Haze_23205 Corylus avellana HOM05D004503 ORTHO05D005460 1.8e-174 616.3 692 52.7
TPR.G25270 Trifolium pratense HOM05D004503 ORTHO05D005460 7.5e-165 584.3 341 85.0
Nitab4.5_0010124g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 1.2e-162 577.0 369 79.4
BcaNung06337 Brassica carinata HOM05D004503 ORTHO05D005460 2.7e-154 549.3 406 70.9
Eucgr.A02017 Eucalyptus grandis HOM05D004503 ORTHO05D005460 3.7e-148 528.9 312 84.0
Pp3c13_19740 Physcomitrium patens HOM05D004503 ORTHO05D005460 1.9e-147 526.6 426 62.7
Mapoly0052s0038 Marchantia polymorpha HOM05D004503 ORTHO05D005460 2.7e-146 522.7 434 61.8
SMO358G0621 Selaginella moellendorffii HOM05D004503 ORTHO05D005460 4.4e-141 505.4 431 59.4
BcaC01g05574 Brassica carinata HOM05D004503 ORTHO05D005460 2.1e-122 443.4 434 57.8
AL3G43330 Arabidopsis lyrata HOM05D004503 ORTHO05D005460 2.0e-109 400.2 377 59.4
CBR_g46726 Chara braunii HOM05D004503 ORTHO05D005460 9.0e-102 374.8 396 49.5
AagrBONN_evm.TU.Sc2ySwM_368.859 Anthoceros agrestis HOM05D004503 ORTHO05D005460 1.3e-100 370.9 332 55.7
PSO063G7036 Papaver somniferum HOM05D004503 ORTHO05D005460 6.1e-90 335.5 212 80.7
vmacro23147 Vaccinium macrocarpon HOM05D004503 ORTHO05D005460 3.0e-89 333.2 285 64.6
PGR042G2164 Punica granatum HOM05D004503 ORTHO05D005460 7.7e-77 292.0 165 84.2
AagrBONN_evm.TU.Sc2ySwM_117.438 Anthoceros agrestis HOM05D004503 ORTHO05D005460 1.5e-75 287.7 320 48.8
SHI12362 Sapria himalayana HOM05D004503 ORTHO05D005460 3.2e-67 260.0 187 74.3
PRCOL_00002554 Prasinoderma coloniale HOM05D004503 ORTHO05D005460 1.6e-66 257.7 430 37.9
BcaB02g09224 Brassica carinata HOM05D004503 ORTHO05D005460 2.9e-60 236.9 194 67.0
MBI10_g05864_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 2.0e-56 224.2 196 66.3
Cre03.g199311 Chlamydomonas reinhardtii HOM05D004503 ORTHO05D005460 3.4e-56 223.4 531 31.8
Cfa025981 Carpinus fangiana HOM05D004503 ORTHO05D005460 1.4e-54 218.0 420 36.2
Lsat_1_v5_gn_8_146460 Lactuca sativa HOM05D004503 ORTHO05D005460 2.1e-37 161.0 101 75.2
Lsat_1_v5_gn_3_97321 Lactuca sativa HOM05D004503 ORTHO05D005460 4.9e-31 139.8 98 73.5
Lsat_1_v5_gn_9_81860 Lactuca sativa HOM05D004503 ORTHO05D005460 4.9e-31 139.8 94 75.5
Lsat_1_v5_gn_1_120320 Lactuca sativa HOM05D004503 ORTHO05D005460 1.0e-28 132.1 95 69.5
Lsat_1_v5_gn_9_102961 Lactuca sativa HOM05D004503 ORTHO05D005460 3.3e-27 127.1 91 70.3
Lsat_1_v5_gn_5_109060 Lactuca sativa HOM05D004503 ORTHO05D005460 1.6e-26 124.8 106 66.0
TPR.G6024 Trifolium pratense HOM05D004503 ORTHO05D005460 1.1e-25 122.1 67 82.1
FvH4_6g38010 Fragaria vesca HOM05D004503 ORTHO05D005460 4.0e-25 120.2 120 58.3
Lsat_1_v5_gn_6_107780 Lactuca sativa HOM05D004503 ORTHO05D003526 6.8e-25 119.4 96 66.7
Lsat_1_v5_gn_2_120 Lactuca sativa HOM05D003203 ORTHO05D003526 3.4e-24 117.1 113 57.5
MBI10_g02227_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 4.4e-24 116.7 117 59.8
Lsat_1_v5_gn_0_13460 Lactuca sativa HOM05D003536 ORTHO05D004233 9.9e-24 115.5 100 63.0
Lsat_1_v5_gn_4_100901 Lactuca sativa HOM05D004503 ORTHO05D005460 2.9e-23 114.0 66 75.8
Lsat_1_v5_gn_1_93381 Lactuca sativa HOM05D003203 ORTHO05D003526 3.8e-23 113.6 103 62.1
Lsat_1_v5_gn_2_36800 Lactuca sativa HOM05D004503 ORTHO05D005460 4.2e-22 110.2 61 78.7
Lsat_1_v5_gn_8_98160 Lactuca sativa HOM05D004503 ORTHO05D005460 1.7e-20 104.8 96 59.4
Lsat_1_v5_gn_8_75300 Lactuca sativa HOM05D004503 ORTHO05D005460 1.4e-17 95.1 115 46.1
Nitab4.5_0027860g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 3.4e-16 90.5 60 76.7
Lsat_1_v5_gn_8_13240 Lactuca sativa HOM05D004503 ORTHO05D005460 1.3e-15 88.6 79 62.0
Sabra02G0047100 Salix brachista HOM05D004503 ORTHO05D005460 1.4e-14 85.1 60 70.0
TPR.G24652 Trifolium pratense HOM05D004503 ORTHO05D005460 3.2e-14 84.0 54 77.8
SalBow8G3309 Salvia bowleyana HOM05D004503 ORTHO05D005460 4.3e-11 73.6 49 73.5
Lsat_1_v5_gn_4_85140 Lactuca sativa HOM05D003203 ORTHO05D003526 1.3e-10 72.0 37 89.2
Rhsim08G0005700 Rhododendron simsii HOM05D004503 ORTHO05D037450 3.4e-08 63.9 72 52.8
MBI10_g02226_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 7.1e-06 56.2 29 86.2


User provided reference genes

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