Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE03G0281 Ceratophyllum demersum HOM05D004330 ORTHO05D005182 6.4e-132 474.2 253 100.0
Nn6g32085 Nelumbo nucifera HOM05D004330 ORTHO05D005182 9.0e-110 400.6 252 84.1
Actinidia16901 Actinidia chinensis HOM05D004330 ORTHO05D005182 3.4e-109 398.7 252 83.3
GSVIVG01012102001 Vitis vinifera HOM05D004330 ORTHO05D005182 5.8e-109 397.9 252 82.9
Cpa.g.sc249.10 Carica papaya HOM05D004330 ORTHO05D005182 3.8e-108 395.2 251 82.5
RcHm_v2.0_Chr6g0249411 Rosa chinensis HOM05D004330 ORTHO05D005182 3.8e-108 395.2 251 83.3
Prupe.1G566400 Prunus persica HOM05D004330 ORTHO05D005182 4.9e-108 394.8 251 83.3
Cfa008036 Carpinus fangiana HOM05D004330 ORTHO05D005182 8.4e-108 394.0 252 82.1
MBI16_g23303_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 8.4e-108 394.0 251 83.3
PGR031G1280 Punica granatum HOM05D004330 ORTHO05D005182 1.1e-107 393.7 252 82.9
Atru.chr13.2589 Acer truncatum HOM05D004330 ORTHO05D005182 1.9e-107 392.9 253 82.6
Aqoxy5G00868 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 5.5e-107 391.3 248 83.1
Dinv22060 Davidia involucrata HOM05D004330 ORTHO05D005182 5.5e-107 391.3 249 83.9
CiPaw.03G012300 Carya illinoinensis HOM05D004330 ORTHO05D005182 2.7e-106 389.0 249 82.7
Actinidia29358 Actinidia chinensis HOM05D004330 ORTHO05D005182 3.5e-106 388.7 252 82.1
CSS0001083 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 1.3e-105 386.7 251 81.3
Eucgr.C04264 Eucalyptus grandis HOM05D004330 ORTHO05D005182 1.8e-105 386.3 252 81.7
MD15G1440000 Malus domestica HOM05D004330 ORTHO05D005182 5.1e-105 384.8 254 82.3
Ciclev10019077m.g Citrus clementina HOM05D004330 ORTHO05D005182 1.9e-104 382.9 250 80.4
Glyma.03G252000 Glycine max HOM05D004330 ORTHO05D005182 1.9e-104 382.9 249 81.1
Phvul.006G106700 Phaseolus vulgaris HOM05D004330 ORTHO05D005182 1.9e-104 382.9 249 81.5
Glyma.19G249400 Glycine max HOM05D004330 ORTHO05D005182 4.3e-104 381.7 249 80.3
Duzib177G1138 Durio zibethinus HOM05D004330 ORTHO05D005182 5.6e-104 381.3 240 84.6
MD08G1244900 Malus domestica HOM05D004330 ORTHO05D005182 7.4e-104 380.9 244 83.6
VMungo0540G0979 Vigna mungo HOM05D004330 ORTHO05D005182 1.3e-103 380.2 249 79.9
CSS0008451 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 1.6e-103 379.8 251 80.1
QL09p001201 Quercus lobata HOM05D004330 ORTHO05D005182 1.6e-103 379.8 253 79.8
Gohir.A05G251400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 2.8e-103 379.0 240 83.8
Gorai.009G264800 Gossypium raimondii HOM05D004330 ORTHO05D005182 2.8e-103 379.0 240 83.8
ATR0580G447 Amborella trichopoda HOM05D004330 ORTHO05D005182 3.7e-103 378.6 250 79.2
Hma1.2p1_0016F.1_g011010 Hydrangea macrophylla HOM05D004330 ORTHO05D005182 3.7e-103 378.6 252 80.6
Gohir.D05G252400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 6.2e-103 377.9 240 83.3
CiPaw.04G008600 Carya illinoinensis HOM05D004330 ORTHO05D005182 1.8e-102 376.3 249 80.7
DCAR_024855 Daucus carota HOM05D004330 ORTHO05D005182 2.4e-102 375.9 275 74.5
Thecc.08G188100 Theobroma cacao HOM05D004330 ORTHO05D005182 2.4e-102 375.9 247 81.4
CANSAT01G1169 Cannabis sativa HOM05D004330 ORTHO05D005182 3.1e-102 375.6 251 78.9
Lj5g0027584 Lotus japonicus HOM05D004330 ORTHO05D005182 5.3e-102 374.8 237 83.5
arahy.Tifrunner.gnm1.ann1.7LJM3H Arachis hypogaea HOM05D004330 ORTHO05D005182 6.9e-102 374.4 237 83.5
arahy.Tifrunner.gnm1.ann1.A4ASB6 Arachis hypogaea HOM05D004330 ORTHO05D005182 6.9e-102 374.4 237 83.5
arahy.Tifrunner.gnm1.ann1.KU2W2N Arachis hypogaea HOM05D004330 ORTHO05D005182 6.9e-102 374.4 237 83.5
Rhsim01G0101300 Rhododendron simsii HOM05D004330 ORTHO05D005182 9.0e-102 374.0 259 78.4
FvH4_2g00140 Fragaria vesca HOM05D004330 ORTHO05D005182 1.2e-101 373.6 251 79.7
Lalb_Chr04g0261991 Lupinus albus HOM05D004330 ORTHO05D005182 1.2e-101 373.6 249 78.7
Lj7C415G17 Lonicera japonica HOM05D004330 ORTHO05D005182 3.4e-101 372.1 249 78.7
Sc17g0000550 Simmondsia chinensis HOM05D004330 ORTHO05D005182 3.4e-101 372.1 250 80.0
HanXRQChr05g0150611 Helianthus annuus HOM05D004330 ORTHO05D005182 7.6e-101 370.9 249 79.1
ECA246G0284 Erigeron canadensis HOM05D004330 ORTHO05D005182 1.3e-100 370.2 246 79.7
FAN24G1765 Fragaria x ananassa HOM05D004330 ORTHO05D005182 1.7e-100 369.8 256 78.5
Sabra06G0020300 Salix brachista HOM05D004330 ORTHO05D005182 1.7e-100 369.8 245 80.8
Manes.15G103100 Manihot esculenta HOM05D004330 ORTHO05D005182 2.9e-100 369.0 240 81.2
PSO210G1668 Papaver somniferum HOM05D004330 ORTHO05D005182 2.9e-100 369.0 240 82.1
PSO761G0081 Papaver somniferum HOM05D004330 ORTHO05D005182 2.9e-100 369.0 240 82.1
Nitab4.5_0000079g0120 Nicotiana tabacum HOM05D004330 ORTHO05D005182 4.9e-100 368.2 247 77.7
Peaxi162Scf00078g01141 Petunia axillaris HOM05D004330 ORTHO05D005182 6.5e-100 367.9 247 77.7
TAR628G0944 Trochodendron aralioides HOM05D004330 ORTHO05D005182 1.1e-99 367.1 223 88.3
Medtr1g079770 Medicago truncatula HOM05D004330 ORTHO05D005182 1.4e-99 366.7 252 78.6
Potri.006G027100 Populus trichocarpa HOM05D004330 ORTHO05D005182 2.5e-99 365.9 245 80.0
TWI12G0377 Tripterygium wilfordii HOM05D004330 ORTHO05D005182 3.2e-99 365.5 241 81.7
Aqoxy2G00735 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 5.5e-99 364.8 249 77.9
COL.COLO4_33595 Corchorus olitorius HOM05D004330 ORTHO05D005182 7.1e-99 364.4 280 72.5
FAN19G3045 Fragaria x ananassa HOM05D004330 ORTHO05D005182 7.1e-99 364.4 255 78.4
Nitab4.5_0007117g0020 Nicotiana tabacum HOM05D004330 ORTHO05D005182 7.1e-99 364.4 247 76.9
vmacro06107 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 2.1e-98 362.8 279 72.0
BolC6t39595H Brassica oleracea HOM05D004330 ORTHO05D005182 4.6e-98 361.7 252 74.2
Oeu020638.1 Olea europaea HOM05D004330 ORTHO05D005182 6.0e-98 361.3 246 77.6
Sp5g26470 Schrenkiella parvula HOM05D004330 ORTHO05D005182 6.0e-98 361.3 252 74.2
AT1G71270 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 1.0e-97 360.5 252 74.2
HPP92_006235 Vanilla planifolia HOM05D004330 ORTHO05D005182 1.0e-97 360.5 236 82.6
Sed0024292 Sechium edule HOM05D004330 ORTHO05D005182 1.3e-97 360.1 249 77.9
BcaC08g46563 Brassica carinata HOM05D004330 ORTHO05D005182 2.3e-97 359.4 252 73.8
C06p45370 Brassica napus HOM05D004330 ORTHO05D005182 2.3e-97 359.4 252 73.8
AUR62024682 Chenopodium quinoa HOM05D004330 ORTHO05D005182 2.3e-97 359.4 241 79.7
Sopen02g038710 Solanum pennellii HOM05D004330 ORTHO05D005182 2.3e-97 359.4 245 77.1
Solyc02g094090.4 Solanum lycopersicum HOM05D004330 ORTHO05D005182 3.0e-97 359.0 240 78.3
BcaB03g14885 Brassica carinata HOM05D004330 ORTHO05D005182 3.9e-97 358.6 252 73.8
A07p37610 Brassica napus HOM05D004330 ORTHO05D005182 3.9e-97 358.6 252 73.8
AL2G30885 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 5.1e-97 358.2 252 73.8
ClCG11G008260 Citrullus lanatus HOM05D004330 ORTHO05D005182 5.1e-97 358.2 249 77.5
Carub.0002s1815 Capsella rubella HOM05D004330 ORTHO05D005182 6.7e-97 357.8 252 73.4
Nitab4.5_0007150g0080 Nicotiana tabacum HOM05D004330 ORTHO05D005182 6.7e-97 357.8 241 77.6
EL10As5g23498 Beta vulgaris HOM05D004330 ORTHO05D005182 1.1e-96 357.1 236 80.9
Psat6g142240 Pisum sativum HOM05D004330 ORTHO05D005182 1.1e-96 357.1 238 80.3
MELO3C008109.2 Cucumis melo HOM05D004330 ORTHO05D005182 2.5e-96 355.9 252 75.4
CAN.G473.93 Capsicum annuum HOM05D004330 ORTHO05D005182 3.3e-96 355.5 240 78.3
THA.LOC104803377 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 3.3e-96 355.5 246 74.8
BraA07t31323Z Brassica rapa HOM05D004330 ORTHO05D005182 5.7e-96 354.8 253 73.5
Thhalv10018205m.g Eutrema salsugineum HOM05D004330 ORTHO05D005182 7.4e-96 354.4 252 73.4
TPR.G10262 Trifolium pratense HOM05D004330 ORTHO05D005182 7.4e-96 354.4 238 79.8
Aa31LG4G9240 Aethionema arabicum HOM05D004330 ORTHO05D005182 9.7e-96 354.0 261 71.6
Cc10_g16170 Coffea canephora HOM05D004330 ORTHO05D005182 9.7e-96 354.0 239 79.9
Os03g0417900 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 9.7e-96 354.0 248 74.2
CsaV3_2G033380 Cucumis sativus L. HOM05D004330 ORTHO05D005182 1.3e-95 353.6 252 75.4
Ca_09987_v3 Cicer arietinum L. HOM05D004330 ORTHO05D005182 1.6e-95 353.2 238 79.8
Lsat_1_v5_gn_6_109860 Lactuca sativa HOM05D004330 ORTHO05D005182 3.7e-95 352.1 246 76.8
Ah.11g049400 Amaranthus hybridus HOM05D004330 ORTHO05D005182 4.1e-94 348.6 247 76.1
Migut.G00904 Erythranthe guttata HOM05D004330 ORTHO05D005182 4.1e-94 348.6 236 77.1
SalBow6G7193 Salvia bowleyana HOM05D004330 ORTHO05D005182 1.0e-92 344.0 246 74.0
AL2G30900 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 1.7e-92 343.2 245 74.7
MSTRG.22475 Avicennia marina HOM05D004330 ORTHO05D005182 6.1e-90 334.7 220 79.5
Nitab4.5_0002887g0010 Nicotiana tabacum HOM05D004330 ORTHO05D005182 1.0e-89 334.0 215 81.4
unitig_37.g12692 Utricularia gibba HOM05D004330 ORTHO05D005182 2.3e-89 332.8 246 72.4
THA.LOC104823378 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 3.9e-89 332.0 246 71.5
SHI24508 Sapria himalayana HOM05D004330 ORTHO05D005182 3.7e-87 325.5 219 78.1
AT1G71300 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 4.5e-85 318.5 276 64.1
Carub.0002s1817 Capsella rubella HOM05D004330 ORTHO05D005182 1.9e-83 313.2 240 68.8
SalBow6G1408 Salvia bowleyana HOM05D004330 ORTHO05D005182 6.7e-81 304.7 246 69.5
Mapoly0091s0001 Marchantia polymorpha HOM05D004330 ORTHO05D005182 6.3e-79 298.1 248 62.5
Pp3c4_27380 Physcomitrium patens HOM05D004330 ORTHO05D005182 5.0e-76 288.5 249 61.0
AagrBONN_evm.TU.Sc2ySwM_228.5612 Anthoceros agrestis HOM05D004330 ORTHO05D005182 5.5e-75 285.0 241 60.6
AagrBONN_evm.TU.Sc2ySwM_228.5613 Anthoceros agrestis HOM05D004330 ORTHO05D005182 5.5e-75 285.0 241 60.6
CBR_g54934 Chara braunii HOM05D004330 ORTHO05D005182 2.8e-71 272.7 250 58.0
SMO304G0018 Selaginella moellendorffii HOM05D004330 ORTHO05D005182 1.1e-70 270.8 239 58.6
Os10g0488300 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 3.7e-63 245.7 233 53.2
COL.COLO4_37491 Corchorus olitorius HOM05D004330 ORTHO05D005182 9.4e-59 231.1 143 85.3
AUR62011839 Chenopodium quinoa HOM05D004330 ORTHO05D005182 2.7e-58 229.6 143 84.6
Zm00001eb045280 Zea mays HOM05D004330 ORTHO05D005182 9.8e-56 221.1 226 52.2
HPP92_006305 Vanilla planifolia HOM05D004330 ORTHO05D005182 7.0e-54 214.9 136 83.8
QL09p008022 Quercus lobata HOM05D004330 ORTHO05D005182 1.1e-51 207.6 198 58.6
QL04p036179 Quercus lobata HOM05D004330 ORTHO05D037441 5.5e-51 205.3 180 65.6
Cre08.g367200 Chlamydomonas reinhardtii HOM05D004330 ORTHO05D005182 7.2e-51 204.9 217 48.4
FvH4_6g22200 Fragaria vesca HOM05D004330 ORTHO05D005182 8.9e-49 198.0 143 77.6
Zm00001eb393130 Zea mays HOM05D004330 ORTHO05D005182 7.0e-46 188.3 117 79.5
MCO11G104 Micromonas commoda HOM05D004330 ORTHO05D005182 9.2e-46 188.0 236 44.1
Hund19535 Selenicereus undatus HOM05D004330 ORTHO05D005182 3.8e-44 182.6 114 83.3
Nitab4.5_0006062g0030 Nicotiana tabacum HOM05D004330 ORTHO05D005182 5.0e-44 182.2 128 75.0
Haze_02242 Corylus avellana HOM05D004330 ORTHO05D005182 7.5e-40 168.3 217 50.2
Rhsim02G0174700 Rhododendron simsii HOM05D004330 ORTHO05D005182 7.5e-40 168.3 107 81.3
SEGI_19884 Sequoiadendron giganteum HOM05D004330 ORTHO05D005182 4.1e-38 162.5 111 70.3
PRCOL_00005416 Prasinoderma coloniale HOM05D004330 ORTHO05D005182 1.5e-35 154.1 239 41.0
Hund19537 Selenicereus undatus HOM05D004330 ORTHO05D005182 1.9e-35 153.7 106 77.4
FAN14G0768 Fragaria x ananassa HOM05D004330 ORTHO05D005182 3.3e-35 152.9 143 65.0
vmacro23409 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 1.4e-25 120.9 142 52.8
CARHR152420 Cardamine hirsuta HOM05D004330 ORTHO05D005182 1.2e-24 117.9 151 47.7
Haze_14000 Corylus avellana HOM05D004330 ORTHO05D005182 1.1e-22 111.3 73 79.5
COL.COLO4_23503 Corchorus olitorius HOM05D004330 ORTHO05D005182 1.9e-19 100.5 82 65.9
CARHR064590 Cardamine hirsuta HOM05D004330 ORTHO05D005182 3.3e-19 99.8 119 47.9
Cfa027264 Carpinus fangiana HOM05D004330 ORTHO05D005182 3.5e-13 79.7 133 32.3
QL05p049490 Quercus lobata HOM05D000205 ORTHO05D037441 1.4e-09 67.8 40 82.5
Haze_02240 Corylus avellana HOM05D000586 ORTHO05D001010 2.0e-08 63.9 50 66.0
COL.COLO4_37492 Corchorus olitorius HOM05D004330 ORTHO05D005182 1.4e-06 57.8 51 58.8


User provided reference genes

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