Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE03G0141 Ceratophyllum demersum HOM05D004330 ORTHO05D005182 2.2e-299 1031.6 525 100.0
TAR628G0944 Trochodendron aralioides HOM05D004330 ORTHO05D005182 1.2e-209 733.4 441 83.4
GSVIVG01012102001 Vitis vinifera HOM05D004330 ORTHO05D005182 3.9e-208 728.4 441 82.8
Thecc.08G188100 Theobroma cacao HOM05D004330 ORTHO05D005182 6.7e-208 727.6 423 85.1
Actinidia16901 Actinidia chinensis HOM05D004330 ORTHO05D005182 1.1e-207 726.9 423 84.6
CSS0001083 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 1.5e-207 726.5 423 84.6
Dinv22060 Davidia involucrata HOM05D004330 ORTHO05D005182 2.5e-207 725.7 423 85.6
Actinidia29358 Actinidia chinensis HOM05D004330 ORTHO05D005182 3.3e-207 725.3 423 84.6
FAN24G1765 Fragaria x ananassa HOM05D004330 ORTHO05D005182 2.1e-206 722.6 441 82.1
FvH4_2g00140 Fragaria vesca HOM05D004330 ORTHO05D005182 2.8e-206 722.2 441 81.9
PSO210G1668 Papaver somniferum HOM05D004330 ORTHO05D005182 2.8e-206 722.2 423 84.9
Manes.15G103100 Manihot esculenta HOM05D004330 ORTHO05D005182 4.8e-206 721.5 423 84.6
PSO761G0081 Papaver somniferum HOM05D004330 ORTHO05D005182 4.8e-206 721.5 423 84.9
Cpa.g.sc249.10 Carica papaya HOM05D004330 ORTHO05D005182 1.1e-205 720.3 441 81.0
Aqoxy5G00868 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 1.8e-205 719.5 423 83.7
RcHm_v2.0_Chr6g0249411 Rosa chinensis HOM05D004330 ORTHO05D005182 1.8e-205 719.5 423 84.6
Nn6g32085 Nelumbo nucifera HOM05D004330 ORTHO05D005182 2.4e-205 719.2 423 83.2
Ciclev10019077m.g Citrus clementina HOM05D004330 ORTHO05D005182 3.1e-205 718.8 423 84.2
CANSAT01G1169 Cannabis sativa HOM05D004330 ORTHO05D005182 5.3e-205 718.0 441 81.2
MD08G1244900 Malus domestica HOM05D004330 ORTHO05D005182 5.3e-205 718.0 441 81.9
FAN19G3045 Fragaria x ananassa HOM05D004330 ORTHO05D005182 9.0e-205 717.2 423 83.9
Prupe.1G566400 Prunus persica HOM05D004330 ORTHO05D005182 9.0e-205 717.2 423 83.9
Hma1.2p1_0016F.1_g011010 Hydrangea macrophylla HOM05D004330 ORTHO05D005182 1.5e-204 716.5 423 83.9
MD15G1440000 Malus domestica HOM05D004330 ORTHO05D005182 1.5e-204 716.5 441 81.0
arahy.Tifrunner.gnm1.ann1.7LJM3H Arachis hypogaea HOM05D004330 ORTHO05D005182 7.6e-204 714.1 423 83.0
arahy.Tifrunner.gnm1.ann1.A4ASB6 Arachis hypogaea HOM05D004330 ORTHO05D005182 7.6e-204 714.1 423 83.0
arahy.Tifrunner.gnm1.ann1.KU2W2N Arachis hypogaea HOM05D004330 ORTHO05D005182 7.6e-204 714.1 423 83.0
Gohir.D05G252400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 1.0e-203 713.8 423 82.7
Gorai.009G264800 Gossypium raimondii HOM05D004330 ORTHO05D005182 1.0e-203 713.8 423 82.7
Eucgr.C04264 Eucalyptus grandis HOM05D004330 ORTHO05D005182 1.3e-203 713.4 423 83.0
vmacro06107 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 2.2e-203 712.6 423 83.7
vmacro23409 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 2.2e-203 712.6 423 83.7
Gohir.A05G251400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 2.9e-203 712.2 423 82.5
Rhsim01G0101300 Rhododendron simsii HOM05D004330 ORTHO05D005182 4.9e-203 711.4 423 83.2
VMungo0540G0979 Vigna mungo HOM05D004330 ORTHO05D005182 1.9e-202 709.5 423 83.0
Cfa008036 Carpinus fangiana HOM05D004330 ORTHO05D005182 2.5e-202 709.1 423 83.7
Cc10_g16170 Coffea canephora HOM05D004330 ORTHO05D005182 2.5e-202 709.1 423 83.5
Glyma.19G249400 Glycine max HOM05D004330 ORTHO05D005182 5.5e-202 708.0 423 83.0
MSTRG.22475 Avicennia marina HOM05D004330 ORTHO05D005182 7.1e-202 707.6 423 83.0
Phvul.006G106700 Phaseolus vulgaris HOM05D004330 ORTHO05D005182 7.1e-202 707.6 423 82.5
ATR0580G447 Amborella trichopoda HOM05D004330 ORTHO05D005182 1.2e-201 706.8 424 82.5
CiPaw.04G008600 Carya illinoinensis HOM05D004330 ORTHO05D005182 1.6e-201 706.4 423 83.7
Glyma.03G252000 Glycine max HOM05D004330 ORTHO05D005182 1.6e-201 706.4 423 83.0
Lj5g0027584 Lotus japonicus HOM05D004330 ORTHO05D005182 1.6e-201 706.4 424 83.0
Potri.006G027100 Populus trichocarpa HOM05D004330 ORTHO05D005182 2.1e-201 706.1 442 79.9
Sp5g26470 Schrenkiella parvula HOM05D004330 ORTHO05D005182 2.7e-201 705.7 441 77.8
QL09p001201 Quercus lobata HOM05D004330 ORTHO05D005182 3.5e-201 705.3 422 83.9
Sabra06G0020300 Salix brachista HOM05D004330 ORTHO05D005182 4.6e-201 704.9 442 79.6
CsaV3_2G033380 Cucumis sativus L. HOM05D004330 ORTHO05D005182 7.9e-201 704.1 423 82.5
Nitab4.5_0007117g0020 Nicotiana tabacum HOM05D004330 ORTHO05D005182 7.9e-201 704.1 416 83.2
CAN.G473.93 Capsicum annuum HOM05D004330 ORTHO05D005182 1.0e-200 703.7 423 81.8
AL2G30885 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 1.3e-200 703.4 441 78.0
Solyc02g094090.4 Solanum lycopersicum HOM05D004330 ORTHO05D005182 1.8e-200 703.0 423 81.6
BraA07t31323Z Brassica rapa HOM05D004330 ORTHO05D005182 2.3e-200 702.6 441 77.6
Lalb_Chr04g0261991 Lupinus albus HOM05D004330 ORTHO05D005182 2.3e-200 702.6 423 82.7
Nitab4.5_0000079g0120 Nicotiana tabacum HOM05D004330 ORTHO05D005182 3.0e-200 702.2 423 81.6
Sopen02g038710 Solanum pennellii HOM05D004330 ORTHO05D005182 3.0e-200 702.2 423 81.6
Ca_09987_v3 Cicer arietinum L. HOM05D004330 ORTHO05D005182 3.9e-200 701.8 423 83.0
AT1G71270 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 5.1e-200 701.4 441 77.8
BcaC08g46563 Brassica carinata HOM05D004330 ORTHO05D005182 5.1e-200 701.4 441 77.3
A07p37610 Brassica napus HOM05D004330 ORTHO05D005182 5.1e-200 701.4 441 77.3
C06p45370 Brassica napus HOM05D004330 ORTHO05D005182 5.1e-200 701.4 441 77.3
BolC6t39595H Brassica oleracea HOM05D004330 ORTHO05D005182 5.1e-200 701.4 441 77.3
BcaB03g14885 Brassica carinata HOM05D004330 ORTHO05D005182 8.7e-200 700.7 441 77.6
Carub.0002s1815 Capsella rubella HOM05D004330 ORTHO05D005182 8.7e-200 700.7 441 77.8
DCAR_024855 Daucus carota HOM05D004330 ORTHO05D005182 8.7e-200 700.7 423 82.0
CiPaw.03G012300 Carya illinoinensis HOM05D004330 ORTHO05D005182 3.3e-199 698.7 423 82.3
Migut.G00904 Erythranthe guttata HOM05D004330 ORTHO05D005182 3.3e-199 698.7 442 79.6
HanXRQChr05g0150611 Helianthus annuus HOM05D004330 ORTHO05D005182 3.3e-199 698.7 423 80.9
Medtr1g079770 Medicago truncatula HOM05D004330 ORTHO05D005182 4.3e-199 698.4 424 82.1
PGR031G1280 Punica granatum HOM05D004330 ORTHO05D005182 5.7e-199 698.0 423 82.0
Sed0024292 Sechium edule HOM05D004330 ORTHO05D005182 5.7e-199 698.0 423 82.3
TPR.G10262 Trifolium pratense HOM05D004330 ORTHO05D005182 7.4e-199 697.6 424 82.3
Psat6g142240 Pisum sativum HOM05D004330 ORTHO05D005182 8.2e-198 694.1 423 81.8
MELO3C008109.2 Cucumis melo HOM05D004330 ORTHO05D005182 1.4e-197 693.3 441 79.1
Haze_02242 Corylus avellana HOM05D004330 ORTHO05D005182 3.1e-197 692.2 421 82.7
Peaxi162Scf00078g01141 Petunia axillaris HOM05D004330 ORTHO05D005182 5.3e-197 691.4 440 78.9
TWI12G0377 Tripterygium wilfordii HOM05D004330 ORTHO05D005182 6.9e-197 691.0 449 77.5
THA.LOC104803377 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 1.2e-196 690.3 425 78.1
CSS0008451 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 1.5e-196 689.9 447 78.5
AUR62011839 Chenopodium quinoa HOM05D004330 ORTHO05D005182 2.6e-196 689.1 423 79.9
AUR62024682 Chenopodium quinoa HOM05D004330 ORTHO05D005182 2.6e-196 689.1 423 79.9
THA.LOC104823378 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 4.5e-196 688.3 425 78.8
Thhalv10018205m.g Eutrema salsugineum HOM05D004330 ORTHO05D005182 5.9e-196 688.0 440 76.1
Sc17g0000550 Simmondsia chinensis HOM05D004330 ORTHO05D005182 1.3e-195 686.8 423 79.9
ClCG11G008260 Citrullus lanatus HOM05D004330 ORTHO05D005182 1.7e-195 686.4 424 81.4
Ah.11g049400 Amaranthus hybridus HOM05D004330 ORTHO05D005182 3.8e-195 685.3 423 79.0
HPP92_006305 Vanilla planifolia HOM05D004330 ORTHO05D005182 6.5e-195 684.5 423 80.4
Hund19537 Selenicereus undatus HOM05D004330 ORTHO05D005182 3.2e-194 682.2 423 79.0
Os03g0417900 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 3.5e-193 678.7 424 79.5
SalBow6G7193 Salvia bowleyana HOM05D004330 ORTHO05D005182 1.8e-192 676.4 469 73.6
ECA246G0284 Erigeron canadensis HOM05D004330 ORTHO05D005182 3.0e-192 675.6 423 77.5
SalBow6G1408 Salvia bowleyana HOM05D004330 ORTHO05D005182 5.1e-192 674.9 469 73.3
EL10As5g23498 Beta vulgaris HOM05D004330 ORTHO05D005182 1.5e-191 673.3 425 78.1
Carub.0002s1817 Capsella rubella HOM05D004330 ORTHO05D005182 7.4e-191 671.0 443 75.2
COL.COLO4_37491 Corchorus olitorius HOM05D004330 ORTHO05D005182 1.1e-189 667.2 463 73.9
Aqoxy2G00735 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 1.4e-189 666.8 423 77.3
Duzib177G1138 Durio zibethinus HOM05D004330 ORTHO05D005182 6.9e-189 664.5 423 78.5
Zm00001eb393130 Zea mays HOM05D004330 ORTHO05D005182 1.2e-188 663.7 424 78.1
Lsat_1_v5_gn_6_109860 Lactuca sativa HOM05D004330 ORTHO05D005182 2.9e-187 659.1 405 78.8
Lj7C415G17 Lonicera japonica HOM05D004330 ORTHO05D005182 2.5e-186 656.0 423 76.8
Oeu020638.1 Olea europaea HOM05D004330 ORTHO05D005182 9.4e-186 654.1 498 68.7
Aa31LG4G9240 Aethionema arabicum HOM05D004330 ORTHO05D005182 7.9e-185 651.0 474 69.6
Nitab4.5_0002887g0010 Nicotiana tabacum HOM05D004330 ORTHO05D005182 2.3e-184 649.4 444 74.8
unitig_37.g12692 Utricularia gibba HOM05D004330 ORTHO05D005182 3.3e-183 645.6 444 74.1
AagrBONN_evm.TU.Sc2ySwM_228.5612 Anthoceros agrestis HOM05D004330 ORTHO05D005182 3.1e-181 639.0 428 72.9
AagrBONN_evm.TU.Sc2ySwM_228.5613 Anthoceros agrestis HOM05D004330 ORTHO05D005182 3.1e-181 639.0 428 72.9
Nitab4.5_0007150g0080 Nicotiana tabacum HOM05D004330 ORTHO05D005182 6.9e-181 637.9 453 72.8
AT1G71300 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 1.1e-178 630.6 467 66.8
Mapoly0091s0001 Marchantia polymorpha HOM05D004330 ORTHO05D005182 1.0e-176 624.0 427 70.7
SMO304G0018 Selaginella moellendorffii HOM05D004330 ORTHO05D005182 4.8e-174 615.1 427 71.7
Pp3c4_27380 Physcomitrium patens HOM05D004330 ORTHO05D005182 2.1e-169 599.7 426 68.8
AL2G30900 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 1.4e-160 570.5 365 75.3
SEGI_21093 Sequoiadendron giganteum HOM05D004330 ORTHO05D005182 8.3e-142 508.1 302 80.8
Os10g0488300 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 3.3e-138 496.1 487 54.6
SHI24508 Sapria himalayana HOM05D004330 ORTHO05D005182 1.6e-137 493.8 424 63.2
Zm00001eb045280 Zea mays HOM05D004330 ORTHO05D005182 4.9e-134 482.3 423 56.0
Migut.C00321 Erythranthe guttata HOM05D004330 ORTHO05D005182 5.6e-130 468.8 280 84.3
CSS0031487 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 3.3e-122 443.0 270 81.5
Haze_02247 Corylus avellana HOM05D004330 ORTHO05D005182 3.8e-118 429.5 269 81.0
Atru.chr13.2589 Acer truncatum HOM05D004330 ORTHO05D005182 3.0e-115 419.9 232 86.2
MBI16_g41537_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 6.0e-108 395.6 238 80.7
SGA_v2.0_scaffold227G43197 Striga asiatica HOM05D004330 ORTHO05D005182 1.1e-106 391.3 253 78.3
COL.COLO4_00397 Corchorus olitorius HOM05D004330 ORTHO05D005182 1.1e-104 384.8 237 80.6
MBI16_g23303_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 6.9e-104 382.1 215 85.1
MCO11G104 Micromonas commoda HOM05D004330 ORTHO05D005182 1.9e-90 337.4 471 43.3
HPP92_006237 Vanilla planifolia HOM05D004330 ORTHO05D005182 3.4e-79 300.1 182 81.3
SalBow1G7663 Salvia bowleyana HOM05D001091 ORTHO05D001020 1.1e-72 278.5 215 66.0
Cre08.g367200 Chlamydomonas reinhardtii HOM05D004330 ORTHO05D005182 6.9e-72 275.8 510 33.7
COL.COLO4_33595 Corchorus olitorius HOM05D004330 ORTHO05D005182 3.2e-69 266.9 155 84.5
MBI13_g40628_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 4.6e-68 263.1 148 83.8
Rhsim02G0174800 Rhododendron simsii HOM05D004330 ORTHO05D005182 9.7e-66 255.4 195 67.7
PRCOL_00005416 Prasinoderma coloniale HOM05D004330 ORTHO05D005182 4.1e-64 250.0 477 33.1
CBR_g54936 Chara braunii HOM05D000019 ORTHO05D000353 8.2e-57 225.7 155 65.8
Actinidia09912 Actinidia chinensis HOM05D004330 ORTHO05D005182 2.9e-54 217.2 167 70.1
Oeu028617.1 Olea europaea HOM05D004330 ORTHO05D005182 1.9e-53 214.5 156 68.6
HanXRQChr10g0312231 Helianthus annuus HOM05D004330 ORTHO05D005182 2.3e-38 164.5 104 78.8
CBR_g54934 Chara braunii HOM05D004330 ORTHO05D005182 1.6e-31 141.7 104 70.2
C06p46260 Brassica napus HOM05D004330 ORTHO05D005182 2.8e-28 131.0 100 69.0
MBI13_g40627_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 5.2e-27 126.7 86 75.6
C06p46170 Brassica napus HOM05D004330 ORTHO05D005182 1.5e-26 125.2 100 67.0
C06p46210 Brassica napus HOM05D004330 ORTHO05D005182 1.5e-26 125.2 100 67.0
Cfa027264 Carpinus fangiana HOM05D004330 ORTHO05D005182 2.4e-24 117.9 327 27.5
HPP92_006236 Vanilla planifolia HOM05D004330 ORTHO05D005182 9.5e-21 105.9 57 87.7
Zm00001eb371470 Zea mays HOM05D003702 ORTHO05D004653 1.2e-20 105.5 62 80.6
Zm00001eb294100 Zea mays HOM05D003702 ORTHO05D004653 1.8e-19 101.7 77 67.5
EL10Ac2g03252 Beta vulgaris HOM05D004330 ORTHO05D005182 3.1e-19 100.9 69 65.2
Zm00001eb378040 Zea mays HOM05D004330 ORTHO05D000629 3.1e-19 100.9 59 83.1
EL10Ac2g03375 Beta vulgaris HOM05D015602 ORTHO05D006373 1.5e-18 98.6 71 70.4
HPP92_006372 Vanilla planifolia HOM05D004330 ORTHO05D005182 5.8e-18 96.7 103 56.3
SGA_v2.0_scaffold123G33447 Striga asiatica HOM05D004330 ORTHO05D005182 1.1e-11 75.9 78 50.0
GSVIVG01018671001 Vitis vinifera HOM05D004330 ORTHO05D005182 9.9e-10 69.3 50 68.0


User provided reference genes

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