Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G3766 Ceratophyllum demersum HOM05D001495 ORTHO05D001391 1.8e-56 222.6 138 100.0
CDE05G3400 Ceratophyllum demersum HOM05D001495 ORTHO05D001391 2.0e-39 166.0 130 85.4
TAR365G0946 Trochodendron aralioides HOM05D001495 ORTHO05D001391 1.2e-23 113.6 126 54.8
Prupe.1G114600 Prunus persica HOM05D001495 ORTHO05D001391 3.5e-23 112.1 121 53.7
CSS0023329 Camellia sinensis var. sinensis HOM05D001495 ORTHO05D001391 4.6e-23 111.7 84 69.0
CSS0023330 Camellia sinensis var. sinensis HOM05D001495 ORTHO05D001391 4.6e-23 111.7 84 69.0
CSS0029961 Camellia sinensis var. sinensis HOM05D001495 ORTHO05D001391 4.6e-23 111.7 84 69.0
CSS0010886 Camellia sinensis var. sinensis HOM05D001495 ORTHO05D001391 2.3e-22 109.4 84 67.9
MD16G1150700 Malus domestica HOM05D001495 ORTHO05D001391 2.3e-22 109.4 123 51.2
arahy.Tifrunner.gnm1.ann1.ZU7UIY Arachis hypogaea HOM05D001495 ORTHO05D001391 2.5e-21 105.9 127 48.8
ClCG06G004470 Citrullus lanatus HOM05D001495 ORTHO05D001391 3.3e-21 105.5 139 48.2
GSVIVG01034966001 Vitis vinifera HOM05D001495 ORTHO05D001391 3.3e-21 105.5 83 68.7
Ca_21427_v3 Cicer arietinum L. HOM05D001495 ORTHO05D001391 4.3e-21 105.1 90 61.1
Cfa015287 Carpinus fangiana HOM05D001495 ORTHO05D001391 7.3e-21 104.4 82 68.3
Nn3g21739 Nelumbo nucifera HOM05D001495 ORTHO05D001391 7.3e-21 104.4 134 53.0
Glyma.07G237900 Glycine max HOM05D001495 ORTHO05D001391 9.5e-21 104.0 92 60.9
Psat4g021880 Pisum sativum HOM05D001495 ORTHO05D001391 9.5e-21 104.0 90 61.1
TPR.G25425 Trifolium pratense HOM05D001495 ORTHO05D001391 1.6e-20 103.2 56 87.5
Medtr4g122650 Medicago truncatula HOM05D001495 ORTHO05D001391 2.1e-20 102.8 86 62.8
vmacro15174 Vaccinium macrocarpon HOM05D001495 ORTHO05D001391 2.8e-20 102.4 85 64.7
VMungo1215G2798 Vigna mungo HOM05D001495 ORTHO05D001391 2.8e-20 102.4 132 45.5
Actinidia13351 Actinidia chinensis HOM05D001495 ORTHO05D001391 3.6e-20 102.1 56 87.5
Manes.15G001500 Manihot esculenta HOM05D001495 ORTHO05D001391 4.7e-20 101.7 56 85.7
Phvul.003G116400 Phaseolus vulgaris HOM05D001495 ORTHO05D001391 4.7e-20 101.7 92 58.7
Sed0003150 Sechium edule HOM05D001495 ORTHO05D001391 4.7e-20 101.7 133 49.6
TWI73G1144 Tripterygium wilfordii HOM05D001495 ORTHO05D001391 4.7e-20 101.7 53 90.6
MELO3C021258.2 Cucumis melo HOM05D001495 ORTHO05D001391 6.1e-20 101.3 91 60.4
CsaV3_6G028500 Cucumis sativus L. HOM05D001495 ORTHO05D001391 6.1e-20 101.3 91 60.4
Dinv44266 Davidia involucrata HOM05D001495 ORTHO05D001391 6.1e-20 101.3 55 87.3
Hma1.2p1_0078F.1_g039900 Hydrangea macrophylla HOM05D001495 ORTHO05D001391 6.1e-20 101.3 58 89.7
Glyma.17G035500 Glycine max HOM05D001495 ORTHO05D001391 8.0e-20 100.9 92 59.8
Dinv15145 Davidia involucrata HOM05D001495 ORTHO05D001391 1.0e-19 100.5 56 87.5
ATR0800G063 Amborella trichopoda HOM05D001495 ORTHO05D001391 1.4e-19 100.1 56 83.9
Lalb_Chr13g0298581 Lupinus albus HOM05D001495 ORTHO05D001391 1.8e-19 99.8 56 85.7
Manes.03G206500 Manihot esculenta HOM05D001495 ORTHO05D001391 1.8e-19 99.8 95 61.1
CiPaw.02G073400 Carya illinoinensis HOM05D001495 ORTHO05D001391 2.3e-19 99.4 90 64.4
QL06p012780 Quercus lobata HOM05D001495 ORTHO05D001391 2.3e-19 99.4 55 85.5
Cc03_g00650 Coffea canephora HOM05D001495 ORTHO05D001391 4.0e-19 98.6 56 83.9
Lalb_Chr07g0181991 Lupinus albus HOM05D001495 ORTHO05D001391 4.0e-19 98.6 53 86.8
TAR636G2324 Trochodendron aralioides HOM05D001495 ORTHO05D001391 4.0e-19 98.6 53 84.9
Ciclev10006289m.g Citrus clementina HOM05D001495 ORTHO05D001391 5.2e-19 98.2 95 55.8
Actinidia14253 Actinidia chinensis HOM05D001495 ORTHO05D001391 8.9e-19 97.4 145 58.6
DCAR_026991 Daucus carota HOM05D001495 ORTHO05D001391 8.9e-19 97.4 54 81.5
Nn4g25557 Nelumbo nucifera HOM05D001495 ORTHO05D001391 1.2e-18 97.1 124 47.6
Atru.chr4.3049 Acer truncatum HOM05D001495 ORTHO05D001391 1.5e-18 96.7 102 54.9
CANSAT11G1739 Cannabis sativa HOM05D001495 ORTHO05D001391 1.5e-18 96.7 138 53.6
Sc25g0003200 Simmondsia chinensis HOM05D001495 ORTHO05D001391 2.0e-18 96.3 92 58.7
COL.COLO4_34585 Corchorus olitorius HOM05D001495 ORTHO05D001391 5.8e-18 94.7 97 55.7
Aqoxy6G02578 Aquilegia oxysepala HOM05D001495 ORTHO05D001391 7.5e-18 94.4 58 75.9
FvH4_4g20210 Fragaria vesca HOM05D001495 ORTHO05D001391 7.5e-18 94.4 56 83.9
MD13G1150500 Malus domestica HOM05D001495 ORTHO05D001391 7.5e-18 94.4 53 83.0
Potri.010G147900 Populus trichocarpa HOM05D001495 ORTHO05D001391 7.5e-18 94.4 61 78.7
PSO724G0940 Papaver somniferum HOM05D001495 ORTHO05D001391 1.7e-17 93.2 55 78.2
RcHm_v2.0_Chr4g0425821 Rosa chinensis HOM05D001495 ORTHO05D001391 1.7e-17 93.2 56 82.1
Thecc.04G304200 Theobroma cacao HOM05D001495 ORTHO05D001391 1.7e-17 93.2 59 78.0
Sabra10G0114000 Salix brachista HOM05D001495 ORTHO05D001391 2.2e-17 92.8 63 74.6
Ah.13g071430 Amaranthus hybridus HOM05D001495 ORTHO05D001391 2.9e-17 92.4 56 80.4
Lj4g0013859 Lotus japonicus HOM05D001495 ORTHO05D001391 2.9e-17 92.4 51 82.4
Peaxi162Scf00228g00515 Petunia axillaris HOM05D001495 ORTHO05D001391 3.7e-17 92.0 57 80.7
Duzib151G0245 Durio zibethinus HOM05D001495 ORTHO05D001391 6.4e-17 91.3 60 75.0
SEGI_00512 Sequoiadendron giganteum HOM05D001495 ORTHO05D001391 1.1e-16 90.5 59 74.6
AUR62039258 Chenopodium quinoa HOM05D001495 ORTHO05D001391 1.4e-16 90.1 56 76.8
Nitab4.5_0000177g0070 Nicotiana tabacum HOM05D001495 ORTHO05D001391 1.4e-16 90.1 57 77.2
Dinv33135 Davidia involucrata HOM05D001495 ORTHO05D001391 2.4e-16 89.4 54 75.9
SEGI_21142 Sequoiadendron giganteum HOM05D001495 ORTHO05D001391 2.4e-16 89.4 55 78.2
SGA_v2.0_scaffold64G22100 Striga asiatica HOM05D001495 ORTHO05D001391 2.4e-16 89.4 55 78.2
CAN.G114.5 Capsicum annuum HOM05D001495 ORTHO05D001391 3.2e-16 89.0 52 80.8
Migut.G00044 Erythranthe guttata HOM05D001495 ORTHO05D001391 3.2e-16 89.0 53 83.0
HPP92_020088 Vanilla planifolia HOM05D001495 ORTHO05D001391 3.2e-16 89.0 56 73.2
HPP92_020089 Vanilla planifolia HOM05D001495 ORTHO05D001391 3.2e-16 89.0 56 73.2
Solyc01g058450.3 Solanum lycopersicum HOM05D001495 ORTHO05D001391 4.1e-16 88.6 53 79.2
Sopen01g024010 Solanum pennellii HOM05D001495 ORTHO05D001391 4.1e-16 88.6 53 79.2
Gohir.A10G173900 Gossypium hirsutum HOM05D001495 ORTHO05D001391 7.0e-16 87.8 61 73.8
Gohir.D10G180400 Gossypium hirsutum HOM05D001495 ORTHO05D001391 7.0e-16 87.8 61 72.1
EL10Ac3g05531 Beta vulgaris HOM05D001495 ORTHO05D001391 9.2e-16 87.4 56 76.8
Mapoly0009s0245 Marchantia polymorpha HOM05D001495 ORTHO05D001391 9.2e-16 87.4 53 75.5
THA.LOC104820311 Tarenaya hassleriana HOM05D001495 ORTHO05D001391 9.2e-16 87.4 59 74.6
Lsat_1_v5_gn_6_261 Lactuca sativa HOM05D001495 ORTHO05D001391 1.2e-15 87.0 47 87.2
MBI15_g36236_MAGBIO Magnolia biondii HOM05D001495 ORTHO05D001391 1.2e-15 87.0 90 55.6
SEGI_25400 Sequoiadendron giganteum HOM05D001495 ORTHO05D001391 1.2e-15 87.0 54 77.8
AUR62016232 Chenopodium quinoa HOM05D001495 ORTHO05D001391 1.6e-15 86.7 56 75.0
Nitab4.5_0009057g0010 Nicotiana tabacum HOM05D001495 ORTHO05D001391 3.5e-15 85.5 46 87.0
Gorai.011G201900 Gossypium raimondii HOM05D001495 ORTHO05D001391 6.0e-15 84.7 97 51.5
Os09g0123200 Oryza sativa ssp. japonica HOM05D001495 ORTHO05D001391 6.0e-15 84.7 56 67.9
Zm00001eb095560 Zea mays HOM05D001495 ORTHO05D001391 6.0e-15 84.7 56 69.6
CARHR222670 Cardamine hirsuta HOM05D001495 ORTHO05D001391 7.8e-15 84.3 45 84.4
HanXRQChr13g0395241 Helianthus annuus HOM05D001495 ORTHO05D001391 7.8e-15 84.3 47 83.0
Thhalv10024390m.g Eutrema salsugineum HOM05D001495 ORTHO05D001391 1.0e-14 84.0 51 76.5
GSVIVG01028149001 Vitis vinifera HOM05D001495 ORTHO05D001391 1.3e-14 83.6 83 54.2
AT4G16280 Arabidopsis thaliana HOM05D001495 ORTHO05D001391 5.0e-14 81.6 51 76.5
Sp7g14810 Schrenkiella parvula HOM05D001495 ORTHO05D001391 5.0e-14 81.6 51 74.5
BcaC09g50326 Brassica carinata HOM05D001495 ORTHO05D001391 6.6e-14 81.3 45 80.0
A01p21280 Brassica napus HOM05D001495 ORTHO05D001391 6.6e-14 81.3 45 80.0
C01p26620 Brassica napus HOM05D001495 ORTHO05D001391 6.6e-14 81.3 45 80.0
ECA233G5661 Erigeron canadensis HOM05D001495 ORTHO05D001391 6.6e-14 81.3 47 78.7
Hund11986 Selenicereus undatus HOM05D001495 ORTHO05D001391 6.6e-14 81.3 62 69.4
BcaNung00209 Brassica carinata HOM05D001495 ORTHO05D001391 8.6e-14 80.9 51 72.5
CiPaw.07G119600 Carya illinoinensis HOM05D001495 ORTHO05D001391 8.6e-14 80.9 131 48.1
CSS0029739 Camellia sinensis var. sinensis HOM05D001495 ORTHO05D001391 1.1e-13 80.5 52 69.2
Duzib212G0382 Durio zibethinus HOM05D001495 ORTHO05D001391 1.1e-13 80.5 45 84.4
Pp3c3_21560 Physcomitrium patens HOM05D001495 ORTHO05D001391 1.1e-13 80.5 46 73.9
Sc17g0000320 Simmondsia chinensis HOM05D001495 ORTHO05D001391 1.5e-13 80.1 51 70.6
Carub.0007s2523 Capsella rubella HOM05D001495 ORTHO05D001391 1.9e-13 79.7 51 72.5
THA.LOC104821799 Tarenaya hassleriana HOM05D001495 ORTHO05D001391 1.9e-13 79.7 59 64.4
HanXRQChr14g0427731 Helianthus annuus HOM05D001495 ORTHO05D001391 2.5e-13 79.3 51 70.6
BolC1t02603H Brassica oleracea HOM05D001495 ORTHO05D001391 3.3e-13 79.0 44 79.5
BraA01t02035Z Brassica rapa HOM05D001495 ORTHO05D001391 3.3e-13 79.0 44 79.5
Phvul.001G214500 Phaseolus vulgaris HOM05D001495 ORTHO05D001391 3.3e-13 79.0 58 62.1
Ciclev10019644m.g Citrus clementina HOM05D001495 ORTHO05D001391 4.3e-13 78.6 54 72.2
Aa31LG10G5840 Aethionema arabicum HOM05D001495 ORTHO05D001391 5.6e-13 78.2 51 72.5
QL12p019026 Quercus lobata HOM05D001495 ORTHO05D001391 5.6e-13 78.2 57 64.9
CANSAT25G3309 Cannabis sativa HOM05D001495 ORTHO05D001391 7.3e-13 77.8 63 58.7
PGR083G2330 Punica granatum HOM05D001495 ORTHO05D001391 2.1e-12 76.3 48 68.8
Hma1.2p1_0408F.1_g146520 Hydrangea macrophylla HOM05D001495 ORTHO05D001391 3.6e-12 75.5 53 66.0
VMungo1383G3554 Vigna mungo HOM05D001495 ORTHO05D001391 3.6e-12 75.5 58 55.2
Gohir.A07G129200 Gossypium hirsutum HOM05D001495 ORTHO05D001391 8.1e-12 74.3 56 62.5
ClCG10G011580 Citrullus lanatus HOM05D001495 ORTHO05D001391 1.4e-11 73.6 58 55.2
Cfa005762 Carpinus fangiana HOM05D001495 ORTHO05D001391 1.8e-11 73.2 52 63.5
Gohir.D07G133600 Gossypium hirsutum HOM05D001495 ORTHO05D001391 1.8e-11 73.2 56 58.9
Gorai.001G144900 Gossypium raimondii HOM05D001495 ORTHO05D001391 1.8e-11 73.2 56 58.9
DCAR_002884 Daucus carota HOM05D001495 ORTHO05D001391 2.3e-11 72.8 53 58.5
Atru.chr5.964 Acer truncatum HOM05D001495 ORTHO05D001391 4.0e-11 72.0 53 64.2
arahy.Tifrunner.gnm1.ann1.R0SDX6 Arachis hypogaea HOM05D001495 ORTHO05D001391 4.0e-11 72.0 54 61.1
Actinidia21385 Actinidia chinensis HOM05D001495 ORTHO05D001391 5.2e-11 71.6 49 63.3
Manes.01G230100 Manihot esculenta HOM05D001495 ORTHO05D001391 5.2e-11 71.6 56 66.1
Potri.002G192900 Populus trichocarpa HOM05D001495 ORTHO05D001391 5.2e-11 71.6 52 65.4
SEGI_15924 Sequoiadendron giganteum HOM05D001495 ORTHO05D001391 5.2e-11 71.6 49 61.2
Aqoxy2G02692 Aquilegia oxysepala HOM05D001495 ORTHO05D001391 6.8e-11 71.2 53 60.4
Thecc.01G316900 Theobroma cacao HOM05D001495 ORTHO05D001391 6.8e-11 71.2 56 58.9
MSTRG.21704 Avicennia marina HOM05D001495 ORTHO05D001391 1.2e-10 70.5 51 58.8
EL10As5g23564 Beta vulgaris HOM05D001495 ORTHO05D001391 1.5e-10 70.1 57 59.6
AUR62011774 Chenopodium quinoa HOM05D001495 ORTHO05D001391 1.5e-10 70.1 57 57.9
MELO3C012931.2 Cucumis melo HOM05D001495 ORTHO05D001391 1.5e-10 70.1 58 53.4
CsaV3_3G026590 Cucumis sativus L. HOM05D001495 ORTHO05D001391 1.5e-10 70.1 58 53.4
arahy.Tifrunner.gnm1.ann1.26UA7Y Arachis hypogaea HOM05D001495 ORTHO05D001391 2.0e-10 69.7 54 59.3
Eucgr.H00995 Eucalyptus grandis HOM05D001495 ORTHO05D001391 2.6e-10 69.3 51 62.7
SMO244G0092 Selaginella moellendorffii HOM05D001495 ORTHO05D001391 2.6e-10 69.3 42 71.4
Duzib138G0012 Durio zibethinus HOM05D001495 ORTHO05D001391 3.4e-10 68.9 118 33.9
Glyma.03G220900 Glycine max HOM05D001495 ORTHO05D001391 1.3e-09 67.0 58 51.7
Sabra02G0163000 Salix brachista HOM05D001495 ORTHO05D001391 1.3e-09 67.0 121 45.5
Cc01_g21610 Coffea canephora HOM05D001495 ORTHO05D001391 1.7e-09 66.6 52 57.7
Rhsim13G0003200 Rhododendron simsii HOM05D001495 ORTHO05D001391 6.4e-09 64.7 44 61.4
Hund02945 Selenicereus undatus HOM05D001495 ORTHO05D001391 8.3e-09 64.3 65 52.3
Migut.D00063 Erythranthe guttata HOM05D001495 ORTHO05D001391 1.1e-08 63.9 53 52.8
MD09G1285500 Malus domestica HOM05D001495 ORTHO05D001391 1.4e-08 63.5 48 60.4
Sed0024600 Sechium edule HOM05D001495 ORTHO05D001391 1.9e-08 63.2 135 33.3
Lj1g0014560 Lotus japonicus HOM05D001495 ORTHO05D001391 2.4e-08 62.8 53 54.7
Lj1g0027953 Lotus japonicus HOM05D001495 ORTHO05D001391 2.4e-08 62.8 53 54.7
Lalb_Chr15g0077991 Lupinus albus HOM05D001495 ORTHO05D001391 2.4e-08 62.8 52 51.9
CBR_g38484 Chara braunii HOM05D001495 ORTHO05D001391 3.2e-08 62.4 54 59.3
SGA_v2.0_scaffold376G50291 Striga asiatica HOM05D001495 ORTHO05D001391 5.4e-08 61.6 45 55.6
Ah.11g049000 Amaranthus hybridus HOM05D001495 ORTHO05D001391 9.2e-08 60.8 63 44.4
Glyma.19G217900 Glycine max HOM05D001495 ORTHO05D001391 9.2e-08 60.8 58 48.3
TPR.G4031 Trifolium pratense HOM05D001495 ORTHO05D001391 1.6e-07 60.1 53 49.1
Sp4g29260 Schrenkiella parvula HOM05D001495 ORTHO05D001391 3.5e-07 58.9 84 39.3
BcaB01g03173 Brassica carinata HOM05D001495 ORTHO05D001391 4.6e-07 58.5 85 41.2
CAN.G1227.15 Capsicum annuum HOM05D001495 ORTHO05D001391 6.0e-07 58.2 46 56.5
Thhalv10001438m.g Eutrema salsugineum HOM05D001495 ORTHO05D001391 6.0e-07 58.2 52 51.9
Sabra14G0087600 Salix brachista HOM05D001495 ORTHO05D001391 6.0e-07 58.2 55 52.7
TWI36G1783 Tripterygium wilfordii HOM05D001495 ORTHO05D001391 6.0e-07 58.2 50 52.0
HanXRQChr05g0154081 Helianthus annuus HOM05D024023 ORTHO05D000110 7.8e-07 57.8 49 63.3
RcHm_v2.0_Chr3g0487191 Rosa chinensis HOM05D001495 ORTHO05D001391 7.8e-07 57.8 43 60.5
CsaV3_UNG230160 Cucumis sativus L. HOM05D001495 ORTHO05D001391 1.0e-06 57.4 30 86.7
Peaxi162Scf00102g01065 Petunia axillaris HOM05D001495 ORTHO05D001391 1.0e-06 57.4 53 49.1
Aa31LG1G28600 Aethionema arabicum HOM05D001495 ORTHO05D001391 1.3e-06 57.0 54 44.4
Psat3g019280 Pisum sativum HOM05D001495 ORTHO05D001391 1.3e-06 57.0 56 44.6
Nitab4.5_0002225g0090 Nicotiana tabacum HOM05D001495 ORTHO05D001391 3.0e-06 55.8 54 48.1
Solyc08g007370.3 Solanum lycopersicum HOM05D001495 ORTHO05D001391 3.0e-06 55.8 54 51.9
Sopen08g003310 Solanum pennellii HOM05D001495 ORTHO05D001391 3.0e-06 55.8 54 51.9
AT2G47310 Arabidopsis thaliana HOM05D001495 ORTHO05D001391 3.9e-06 55.5 44 54.5
MBI04_g43053_MAGBIO Magnolia biondii HOM05D001873 ORTHO05D001976 3.9e-06 55.5 43 51.2
HanXRQChr04g0106241 Helianthus annuus HOM05D001495 ORTHO05D001391 5.1e-06 55.1 50 54.0
Nitab4.5_0000712g0180 Nicotiana tabacum HOM05D001495 ORTHO05D001391 5.1e-06 55.1 54 48.1
BcaB06g29453 Brassica carinata HOM05D001495 ORTHO05D001391 6.6e-06 54.7 45 51.1
A03p25900 Brassica napus HOM05D001495 ORTHO05D004548 6.6e-06 54.7 50 46.0
BraA03t11806Z Brassica rapa HOM05D001495 ORTHO05D001391 6.6e-06 54.7 50 46.0
Cpa.g.sc13.171 Carica papaya HOM05D000070 ORTHO05D119585 6.6e-06 54.7 32 78.1
BcaC01g05037 Brassica carinata HOM05D001495 ORTHO05D001391 8.6e-06 54.3 84 34.5
BolC3t15441H Brassica oleracea HOM05D001495 ORTHO05D001391 8.6e-06 54.3 84 34.5


User provided reference genes

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