Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE01G0292 Ceratophyllum demersum HOM05D005526 ORTHO05D006802 3.1e-207 724.9 374 100.0
CDE02G1452 Ceratophyllum demersum HOM05D005526 ORTHO05D006802 1.3e-181 639.8 427 80.6
TAR383G0281 Trochodendron aralioides HOM05D005526 ORTHO05D006802 3.9e-109 399.1 433 56.1
Nn2g11952 Nelumbo nucifera HOM05D005526 ORTHO05D006802 5.1e-109 398.7 434 55.3
Cfa002011 Carpinus fangiana HOM05D005526 ORTHO05D006802 3.4e-105 386.0 426 55.4
MBI01_g11875_MAGBIO Magnolia biondii HOM05D005526 ORTHO05D006802 3.4e-105 386.0 440 53.6
Dinv38097 Davidia involucrata HOM05D005526 ORTHO05D006802 9.9e-105 384.4 438 53.4
Duzib235G1092 Durio zibethinus HOM05D005526 ORTHO05D006802 3.5e-102 375.9 405 54.3
Gohir.D06G117200 Gossypium hirsutum HOM05D005526 ORTHO05D006802 1.3e-101 374.0 409 53.3
Gorai.010G134800 Gossypium raimondii HOM05D005526 ORTHO05D006802 1.3e-101 374.0 409 53.3
Actinidia08810 Actinidia chinensis HOM05D005526 ORTHO05D006802 6.6e-101 371.7 435 52.4
Gohir.A06G112600 Gossypium hirsutum HOM05D005526 ORTHO05D006802 1.1e-100 370.9 409 53.3
CiPaw.01G244400 Carya illinoinensis HOM05D005526 ORTHO05D006802 1.9e-100 370.2 393 56.0
CSS0037293 Camellia sinensis var. sinensis HOM05D005526 ORTHO05D006802 3.3e-100 369.4 394 55.3
CsaV3_4G001390 Cucumis sativus L. HOM05D005526 ORTHO05D006802 3.3e-100 369.4 429 52.0
Sed0002477 Sechium edule HOM05D005526 ORTHO05D006802 7.3e-100 368.2 393 54.7
Cpa.g.sc336.8 Carica papaya HOM05D005526 ORTHO05D006802 1.6e-99 367.1 396 55.3
Thecc.06G073100 Theobroma cacao HOM05D005526 ORTHO05D006802 1.6e-99 367.1 405 53.6
Ciclev10025661m.g Citrus clementina HOM05D005526 ORTHO05D006802 1.1e-98 364.4 431 51.5
Atru.chr1.3093 Acer truncatum HOM05D005526 ORTHO05D006802 3.1e-98 362.8 428 52.3
Ca_01085_v3 Cicer arietinum L. HOM05D005526 ORTHO05D006802 5.2e-98 362.1 392 54.6
TWI18G0833 Tripterygium wilfordii HOM05D005526 ORTHO05D006802 5.2e-98 362.1 421 52.3
Manes.04G116500 Manihot esculenta HOM05D005526 ORTHO05D006802 8.9e-98 361.3 401 53.4
Medtr2g103110 Medicago truncatula HOM05D005526 ORTHO05D006802 8.9e-98 361.3 390 54.4
Lj3g0017842 Lotus japonicus HOM05D005526 ORTHO05D006802 1.2e-97 360.9 435 51.0
MD09G1221000 Malus domestica HOM05D005526 ORTHO05D006802 2.0e-97 360.1 436 51.6
PSO170G3249 Papaver somniferum HOM05D005526 ORTHO05D006802 3.4e-97 359.4 421 51.5
Aqoxy7G02084 Aquilegia oxysepala HOM05D005526 ORTHO05D006802 7.6e-97 358.2 409 52.8
TWI75G1755 Tripterygium wilfordii HOM05D005526 ORTHO05D006802 9.9e-97 357.8 420 52.4
Eucgr.J03045 Eucalyptus grandis HOM05D005526 ORTHO05D006802 1.3e-96 357.5 396 52.8
FAN02G2127 Fragaria x ananassa HOM05D005526 ORTHO05D006802 2.2e-96 356.7 430 50.2
Glyma.13G363400 Glycine max HOM05D005526 ORTHO05D006802 2.2e-96 356.7 395 53.4
FvH4_6g30340 Fragaria vesca HOM05D005526 ORTHO05D006802 4.9e-96 355.5 430 50.0
Prupe.3G079900 Prunus persica HOM05D005526 ORTHO05D006802 6.4e-96 355.1 392 54.8
Glyma.15G010400 Glycine max HOM05D005526 ORTHO05D006802 1.1e-95 354.4 439 49.7
A07p26570 Brassica napus HOM05D005526 ORTHO05D006802 1.4e-95 354.0 395 51.9
BcaC08g45297 Brassica carinata HOM05D005526 ORTHO05D006802 4.2e-95 352.4 399 51.4
C06p28990 Brassica napus HOM05D005526 ORTHO05D006802 7.1e-95 351.7 400 51.5
THA.LOC104812497 Tarenaya hassleriana HOM05D005526 ORTHO05D006802 7.1e-95 351.7 388 53.4
BolC6t38065H Brassica oleracea HOM05D005526 ORTHO05D006802 2.1e-94 350.1 402 51.2
Thhalv10018648m.g Eutrema salsugineum HOM05D005526 ORTHO05D006802 7.8e-94 348.2 387 53.2
CARHR074270 Cardamine hirsuta HOM05D005526 ORTHO05D006802 3.0e-93 346.3 389 51.9
BcaB02g07290 Brassica carinata HOM05D005526 ORTHO05D006802 6.6e-93 345.1 406 50.5
arahy.Tifrunner.gnm1.ann1.FYL3MV Arachis hypogaea HOM05D005526 ORTHO05D006802 1.5e-92 344.0 432 51.2
Sp5g35600 Schrenkiella parvula HOM05D005526 ORTHO05D006802 1.5e-92 344.0 387 51.2
Potri.001G172800 Populus trichocarpa HOM05D005526 ORTHO05D006802 2.5e-92 343.2 392 51.8
CANSAT56G0953 Cannabis sativa HOM05D005526 ORTHO05D006802 3.3e-92 342.8 426 50.7
Migut.D01055 Erythranthe guttata HOM05D005526 ORTHO05D006802 4.3e-92 342.4 394 52.0
PGR031G1627 Punica granatum HOM05D005526 ORTHO05D006802 4.3e-92 342.4 389 52.4
Phvul.005G174900 Phaseolus vulgaris HOM05D005526 ORTHO05D006802 1.2e-91 340.9 429 48.5
ECA234G2940 Erigeron canadensis HOM05D005526 ORTHO05D006802 2.8e-91 339.7 422 49.8
AT3G06820 Arabidopsis thaliana HOM05D005526 ORTHO05D006802 3.6e-91 339.3 394 52.3
MSTRG.9436 Avicennia marina HOM05D005526 ORTHO05D006802 4.7e-91 339.0 427 49.2
SalBow2G2365 Salvia bowleyana HOM05D005526 ORTHO05D006802 8.1e-91 338.2 394 50.8
Hund06580 Selenicereus undatus HOM05D005526 ORTHO05D006802 1.5e-89 334.0 417 50.1
Rhsim12G0193000 Rhododendron simsii HOM05D005526 ORTHO05D006802 7.6e-89 331.6 529 43.1
Sc10g0005720 Simmondsia chinensis HOM05D005526 ORTHO05D006802 1.7e-88 330.5 381 51.2
VMungo1080G0636 Vigna mungo HOM05D005526 ORTHO05D006802 1.7e-88 330.5 428 47.7
AT1G80210 Arabidopsis thaliana HOM05D005526 ORTHO05D006802 2.9e-88 329.7 369 52.3
Solyc06g067990.3 Solanum lycopersicum HOM05D005526 ORTHO05D006802 3.8e-88 329.3 421 49.4
DCAR_025483 Daucus carota HOM05D005526 ORTHO05D006802 4.9e-88 328.9 394 51.3
AUR62016379 Chenopodium quinoa HOM05D005526 ORTHO05D006802 2.4e-87 326.6 425 48.2
EL10Ac9g21940 Beta vulgaris HOM05D005526 ORTHO05D006802 3.2e-87 326.2 426 48.6
Dinv30571 Davidia involucrata HOM05D005526 ORTHO05D006802 5.4e-87 325.5 361 55.1
SGA_v2.0_scaffold16G07615 Striga asiatica HOM05D005526 ORTHO05D006802 7.1e-87 325.1 405 49.1
vmacro16915 Vaccinium macrocarpon HOM05D005526 ORTHO05D006802 6.6e-85 318.5 504 43.1
QL05p027824 Quercus lobata HOM05D005526 ORTHO05D006802 2.5e-84 316.6 521 42.6
MD17G1204400 Malus domestica HOM05D005526 ORTHO05D006802 5.6e-84 315.5 519 43.7
SEGI_35764 Sequoiadendron giganteum HOM05D005526 ORTHO05D006802 6.2e-83 312.0 439 45.1
Os05g0542600 Oryza sativa ssp. japonica HOM05D005526 ORTHO05D006802 6.9e-82 308.5 381 48.6
BraA07t30300Z Brassica rapa HOM05D005526 ORTHO05D006802 3.4e-81 306.2 381 48.0
Zm00001eb294490 Zea mays HOM05D005526 ORTHO05D006802 7.6e-81 305.1 385 47.5
arahy.Tifrunner.gnm1.ann1.IMA97E Arachis hypogaea HOM05D005526 ORTHO05D006802 3.8e-80 302.8 426 48.1
CiPaw.02G154800 Carya illinoinensis HOM05D005526 ORTHO05D006802 3.2e-79 299.7 275 62.5
ClCG07G012810 Citrullus lanatus HOM05D005526 ORTHO05D006802 3.5e-78 296.2 433 46.2
Lsat_1_v5_gn_5_132520 Lactuca sativa HOM05D005526 ORTHO05D006802 1.8e-77 293.9 422 47.2
Aa31LG4G500 Aethionema arabicum HOM05D005526 ORTHO05D006802 3.0e-77 293.1 389 47.6
Oeu052283.1 Olea europaea HOM05D005526 ORTHO05D006802 1.9e-76 290.4 412 45.9
Peaxi162Scf00207g00731 Petunia axillaris HOM05D005526 ORTHO05D006802 9.6e-76 288.1 373 47.7
FAN09G0405 Fragaria x ananassa HOM05D005526 ORTHO05D006802 1.6e-75 287.3 430 45.6
Nitab4.5_0013710g0010 Nicotiana tabacum HOM05D005526 ORTHO05D006802 1.3e-72 277.7 416 45.4
Nitab4.5_0000620g0060 Nicotiana tabacum HOM05D005526 ORTHO05D006802 1.0e-69 268.1 376 45.7
AUR62011560 Chenopodium quinoa HOM05D005526 ORTHO05D006802 6.7e-69 265.4 425 43.1
Pp3c27_4740 Physcomitrium patens HOM05D005526 ORTHO05D006802 1.9e-68 263.8 362 44.2
Mapoly0053s0043 Marchantia polymorpha HOM05D005526 ORTHO05D006802 2.8e-67 260.0 358 44.4
unitig_899.g14780 Utricularia gibba HOM05D005526 ORTHO05D006802 1.0e-64 251.5 373 44.0
CBR_g46861 Chara braunii HOM05D005526 ORTHO05D006802 1.3e-64 251.1 427 37.7
Ah.01g020810 Amaranthus hybridus HOM05D005526 ORTHO05D006802 2.2e-64 250.4 404 44.6
GSVIVG01017251001 Vitis vinifera HOM05D005526 ORTHO05D006802 2.2e-64 250.4 347 46.7
MELO3C017901.2 Cucumis melo HOM05D005526 ORTHO05D006802 2.1e-62 243.8 343 45.5
COL.COLO4_12896 Corchorus olitorius HOM05D005526 ORTHO05D006802 1.3e-61 241.1 314 46.8
Psat5g300440 Pisum sativum HOM05D005526 ORTHO05D006802 3.0e-61 240.0 345 44.1
Cc04_g04020 Coffea canephora HOM05D005526 ORTHO05D006802 1.5e-60 237.7 301 47.8
Lj5C68G25 Lonicera japonica HOM05D005526 ORTHO05D006802 9.7e-60 235.0 313 47.3
Oeu063802.2 Olea europaea HOM05D005526 ORTHO05D006802 9.7e-60 235.0 307 45.9
TPR.G37284 Trifolium pratense HOM05D005526 ORTHO05D006802 1.3e-59 234.6 307 47.9
Zm00001eb342510 Zea mays HOM05D005526 ORTHO05D006802 1.3e-59 234.6 206 61.2
CSS0003126 Camellia sinensis var. sinensis HOM05D005526 ORTHO05D006802 2.2e-59 233.8 321 47.0
HanXRQChr10g0303071 Helianthus annuus HOM05D005526 ORTHO05D006802 4.8e-59 232.6 342 45.9
SGA_v2.0_scaffold37G14789 Striga asiatica HOM05D005526 ORTHO05D006802 4.8e-59 232.6 356 44.4
Lalb_Chr14g0373681 Lupinus albus HOM05D005526 ORTHO05D006802 6.3e-59 232.3 309 47.6
CAN.G395.46 Capsicum annuum HOM05D005526 ORTHO05D006802 1.8e-58 230.7 333 45.0
RcHm_v2.0_Chr2g0136621 Rosa chinensis HOM05D005526 ORTHO05D006802 3.1e-58 229.9 346 44.8
AL3G17940 Arabidopsis lyrata HOM05D005526 ORTHO05D006802 1.1e-55 221.5 306 45.1
Oeu014842.2 Olea europaea HOM05D005526 ORTHO05D006802 1.9e-55 220.7 320 44.7
Sopen06g025270 Solanum pennellii HOM05D005526 ORTHO05D006802 1.9e-55 220.7 335 44.5
AL2G41300 Arabidopsis lyrata HOM05D005526 ORTHO05D006802 1.0e-53 214.9 298 44.0
Carub.0002s2731 Capsella rubella HOM05D005526 ORTHO05D006802 4.8e-51 206.1 306 42.2
Haze_16512 Corylus avellana HOM05D005526 ORTHO05D006802 1.4e-50 204.5 231 54.5
HPP92_009843 Vanilla planifolia HOM05D005526 ORTHO05D006802 2.4e-50 203.8 315 41.9
ATR1156G007 Amborella trichopoda HOM05D005526 ORTHO05D006802 7.4e-44 182.2 309 42.4
SMO196G0028 Selaginella moellendorffii HOM05D005526 ORTHO05D006802 4.4e-36 156.4 291 36.1
Cre11.g475400 Chlamydomonas reinhardtii HOM05D005526 ORTHO05D006802 1.7e-32 144.4 139 55.4
RcHm_v2.0_Chr2g0136631 Rosa chinensis HOM05D005526 ORTHO05D006802 1.5e-31 141.4 84 83.3
FAN05G1558 Fragaria x ananassa HOM05D005526 ORTHO05D006802 2.5e-31 140.6 81 85.2
CSS0009710 Camellia sinensis var. sinensis HOM05D005526 ORTHO05D006802 6.1e-30 136.0 81 85.2
GSVIVG01017250001 Vitis vinifera HOM05D005526 ORTHO05D006802 2.0e-28 131.0 78 83.3
TPR.G37278 Trifolium pratense HOM05D005526 ORTHO05D006802 2.6e-28 130.6 81 81.5
ATR1156G076 Amborella trichopoda HOM05D005526 ORTHO05D006802 3.4e-28 130.2 83 78.3
Lj5A68T70 Lonicera japonica HOM05D005526 ORTHO05D006802 5.7e-28 129.4 84 78.6
AagrBONN_evm.TU.Sc2ySwM_368.2432 Anthoceros agrestis HOM05D005526 ORTHO05D006802 7.5e-28 129.0 81 77.8
Cc04_g04010 Coffea canephora HOM05D005526 ORTHO05D006802 1.3e-27 128.3 89 74.2
Sabra01G0138900 Salix brachista HOM05D005526 ORTHO05D006802 1.3e-27 128.3 81 77.8
Lalb_Chr14g0373671 Lupinus albus HOM05D005526 ORTHO05D006802 4.8e-27 126.3 81 77.8
HanXRQChr10g0303081 Helianthus annuus HOM05D005526 ORTHO05D006802 1.1e-26 125.2 81 81.5
Sopen06g025280 Solanum pennellii HOM05D005526 ORTHO05D006802 1.8e-26 124.4 84 75.0
PGSC0003DMG401028513 Solanum tuberosum HOM05D005526 ORTHO05D006802 4.1e-26 123.2 81 76.5
AagrBONN_evm.TU.Sc2ySwM_368.2431 Anthoceros agrestis HOM05D005526 ORTHO05D006802 4.2e-23 113.2 274 32.8
Haze_16513 Corylus avellana HOM05D005526 ORTHO05D006802 1.4e-21 108.2 203 39.4
FAN14G4362 Fragaria x ananassa HOM05D005526 ORTHO05D006802 4.8e-19 99.8 267 34.1
Sed0012845 Sechium edule HOM05D005526 ORTHO05D006802 1.5e-15 88.2 288 30.6
CAN.G395.47 Capsicum annuum HOM05D005526 ORTHO05D006802 3.2e-10 70.5 56 64.3
Gohir.A10G140700 Gossypium hirsutum HOM05D000009 ORTHO05D000008 5.4e-10 69.7 41 80.5
SalBow8G0881 Salvia bowleyana HOM05D005526 ORTHO05D006802 2.7e-09 67.4 96 44.8
Pp3c6_24500 Physcomitrium patens HOM05D005526 ORTHO05D006802 4.3e-07 60.1 56 51.8
COL.COLO4_12895 Corchorus olitorius HOM05D005526 ORTHO05D006802 3.6e-06 57.0 31 80.6


User provided reference genes

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