Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g80544 Chara braunii HOM05D003208 ORTHO05D004103 1.1e-71 273.1 132 100.0
Pp3c15_5210 Physcomitrium patens HOM05D003208 ORTHO05D004103 3.8e-27 125.2 131 50.4
Pp3c15_5220 Physcomitrium patens HOM05D003208 ORTHO05D004103 3.8e-27 125.2 131 50.4
Lj2C541T5 Lonicera japonica HOM05D003208 ORTHO05D004103 1.2e-25 120.2 131 48.9
Mapoly0022s0008 Marchantia polymorpha HOM05D003208 ORTHO05D004103 3.6e-25 118.6 131 49.6
TAR628G1304 Trochodendron aralioides HOM05D003208 ORTHO05D004103 3.6e-25 118.6 131 47.3
DCAR_003477 Daucus carota HOM05D003208 ORTHO05D004103 4.7e-25 118.2 131 47.3
QL06p048297 Quercus lobata HOM05D003208 ORTHO05D004103 6.1e-25 117.9 131 47.3
SEGI_14491 Sequoiadendron giganteum HOM05D003208 ORTHO05D004103 1.4e-24 116.7 131 49.6
SEGI_32864 Sequoiadendron giganteum HOM05D003208 ORTHO05D004103 1.4e-24 116.7 131 49.6
CDE10G0727 Ceratophyllum demersum HOM05D003208 ORTHO05D004103 2.3e-24 115.9 133 47.4
Aqoxy6G00734 Aquilegia oxysepala HOM05D003208 ORTHO05D004103 3.0e-24 115.5 131 48.1
MBI02_g27964_MAGBIO Magnolia biondii HOM05D003208 ORTHO05D004103 3.0e-24 115.5 132 47.0
RcHm_v2.0_Chr2g0112501 Rosa chinensis HOM05D003208 ORTHO05D004103 3.0e-24 115.5 131 46.6
SMO165G0121 Selaginella moellendorffii HOM05D003208 ORTHO05D004103 3.0e-24 115.5 132 47.0
Prupe.6G191700 Prunus persica HOM05D003208 ORTHO05D004103 3.9e-24 115.2 131 47.3
Eucgr.H04746 Eucalyptus grandis HOM05D003208 ORTHO05D004103 5.1e-24 114.8 131 48.9
PGR102G0950 Punica granatum HOM05D003208 ORTHO05D004103 5.1e-24 114.8 131 48.1
FAN26G2141 Fragaria x ananassa HOM05D003208 ORTHO05D004103 6.7e-24 114.4 131 47.3
Rhsim10G0166900 Rhododendron simsii HOM05D003208 ORTHO05D004103 6.7e-24 114.4 131 48.1
Sopen11g004910 Solanum pennellii HOM05D003208 ORTHO05D004103 6.7e-24 114.4 131 48.1
Actinidia19997 Actinidia chinensis HOM05D003208 ORTHO05D004103 8.8e-24 114.0 131 49.6
FvH4_1g20370 Fragaria vesca HOM05D003208 ORTHO05D004103 8.8e-24 114.0 131 45.8
Lsat_1_v5_gn_5_45360 Lactuca sativa HOM05D003208 ORTHO05D004103 8.8e-24 114.0 131 48.9
vmacro12976 Vaccinium macrocarpon HOM05D003208 ORTHO05D004103 8.8e-24 114.0 131 47.3
Dinv13221 Davidia involucrata HOM05D003208 ORTHO05D004103 1.1e-23 113.6 131 45.8
PGSC0003DMG400016157 Solanum tuberosum HOM05D003208 ORTHO05D004103 1.1e-23 113.6 131 48.1
MSTRG.2578 Avicennia marina HOM05D003208 ORTHO05D004103 1.5e-23 113.2 131 46.6
Solyc11g010110.3 Solanum lycopersicum HOM05D003208 ORTHO05D004103 1.5e-23 113.2 131 48.1
Cfa002613 Carpinus fangiana HOM05D003208 ORTHO05D004103 2.0e-23 112.8 131 47.3
Ca_17757_v3 Cicer arietinum L. HOM05D003208 ORTHO05D004103 2.0e-23 112.8 131 45.8
FAN28G0091 Fragaria x ananassa HOM05D003208 ORTHO05D004103 2.0e-23 112.8 131 46.6
Hma1.2p1_0019F.1_g013690 Hydrangea macrophylla HOM05D003208 ORTHO05D004103 2.0e-23 112.8 131 45.8
ATR0684G089 Amborella trichopoda HOM05D003208 ORTHO05D004103 2.6e-23 112.5 133 46.6
CANSAT01G1547 Cannabis sativa HOM05D003208 ORTHO05D004103 2.6e-23 112.5 131 45.8
Ciclev10024895m.g Citrus clementina HOM05D003208 ORTHO05D004103 2.6e-23 112.5 131 46.6
Haze_24867 Corylus avellana HOM05D003208 ORTHO05D004103 2.6e-23 112.5 131 47.3
ECA246G0394 Erigeron canadensis HOM05D003208 ORTHO05D004103 2.6e-23 112.5 131 44.3
Lalb_Chr13g0295911 Lupinus albus HOM05D003208 ORTHO05D004103 2.6e-23 112.5 131 45.0
Nn5g30027 Nelumbo nucifera HOM05D003208 ORTHO05D004103 2.6e-23 112.5 131 44.3
Oeu056635.1 Olea europaea HOM05D003208 ORTHO05D004103 2.6e-23 112.5 131 45.0
Zm00001eb315780 Zea mays HOM05D003208 ORTHO05D004103 2.6e-23 112.5 131 45.0
PSO541G6125 Papaver somniferum HOM05D003208 ORTHO05D004103 3.3e-23 112.1 131 43.5
Nitab4.5_0002604g0040 Nicotiana tabacum HOM05D003208 ORTHO05D004103 4.4e-23 111.7 131 47.3
Solyc05g051520.3 Solanum lycopersicum HOM05D003208 ORTHO05D004103 4.4e-23 111.7 131 46.6
GSVIVG01003416001 Vitis vinifera HOM05D003208 ORTHO05D004103 4.4e-23 111.7 131 44.3
CAN.G905.28 Capsicum annuum HOM05D003208 ORTHO05D004103 5.7e-23 111.3 130 50.0
Cpa.g.sc55.83 Carica papaya HOM05D003208 ORTHO05D004103 5.7e-23 111.3 131 45.8
Glyma.05G176167 Glycine max HOM05D003208 ORTHO05D004103 5.7e-23 111.3 131 45.8
Os09g0471900 Oryza sativa ssp. japonica HOM05D003208 ORTHO05D004103 5.7e-23 111.3 131 46.6
SGA_v2.0_scaffold111G31500 Striga asiatica HOM05D003208 ORTHO05D004103 5.7e-23 111.3 131 44.3
Duzib147G1622 Durio zibethinus HOM05D003208 ORTHO05D004103 7.4e-23 110.9 131 45.0
Gohir.D03G039900 Gossypium hirsutum HOM05D003208 ORTHO05D004103 7.4e-23 110.9 131 44.3
Gorai.003G041000 Gossypium raimondii HOM05D003208 ORTHO05D004103 7.4e-23 110.9 131 44.3
Atru.chr3.1361 Acer truncatum HOM05D003208 ORTHO05D004103 9.7e-23 110.5 131 45.0
arahy.Tifrunner.gnm1.ann1.56KYQ9 Arachis hypogaea HOM05D003208 ORTHO05D004103 9.7e-23 110.5 131 45.0
Glyma.08G133700 Glycine max HOM05D003208 ORTHO05D004103 9.7e-23 110.5 131 45.0
Gohir.A02G129100 Gossypium hirsutum HOM05D003208 ORTHO05D004103 9.7e-23 110.5 131 44.3
Migut.H02342 Erythranthe guttata HOM05D003208 ORTHO05D004103 1.3e-22 110.2 131 42.0
FAN23G1395 Fragaria x ananassa HOM05D003208 ORTHO05D004103 1.3e-22 110.2 131 45.8
Lj4g0011115 Lotus japonicus HOM05D003208 ORTHO05D004103 1.3e-22 110.2 131 45.0
Lalb_Chr07g0185301 Lupinus albus HOM05D003208 ORTHO05D004103 1.3e-22 110.2 131 45.0
Nitab4.5_0000241g0270 Nicotiana tabacum HOM05D003208 ORTHO05D004103 1.3e-22 110.2 131 48.1
Sopen05g029940 Solanum pennellii HOM05D003208 ORTHO05D004103 1.3e-22 110.2 131 45.8
Thecc.01G096900 Theobroma cacao HOM05D003208 ORTHO05D004103 1.3e-22 110.2 131 45.8
AagrBONN_evm.TU.Sc2ySwM_368.2854 Anthoceros agrestis HOM05D003208 ORTHO05D004103 1.7e-22 109.8 131 44.3
HanXRQChr07g0196311 Helianthus annuus HOM05D003208 ORTHO05D004103 1.7e-22 109.8 131 45.8
PSO675G0282 Papaver somniferum HOM05D003208 ORTHO05D004103 1.7e-22 109.8 131 45.0
Phvul.002G261300 Phaseolus vulgaris HOM05D003208 ORTHO05D004103 1.7e-22 109.8 131 45.0
VMungo1383G1326 Vigna mungo HOM05D003208 ORTHO05D004103 1.7e-22 109.8 131 45.0
MD15G1321600 Malus domestica HOM05D003208 ORTHO05D004103 2.2e-22 109.4 131 47.3
Manes.12G131000 Manihot esculenta HOM05D003208 ORTHO05D004103 2.2e-22 109.4 131 44.3
arahy.Tifrunner.gnm1.ann1.G6ARYH Arachis hypogaea HOM05D003208 ORTHO05D004103 2.8e-22 109.0 131 45.0
MD01G1034300 Malus domestica HOM05D003208 ORTHO05D004103 2.8e-22 109.0 131 45.0
Potri.007G096100 Populus trichocarpa HOM05D003208 ORTHO05D004103 2.8e-22 109.0 131 45.0
Sabra07G0079200 Salix brachista HOM05D003208 ORTHO05D004103 2.8e-22 109.0 131 45.0
THA.LOC104807678 Tarenaya hassleriana HOM05D003208 ORTHO05D004103 2.8e-22 109.0 131 45.8
TWI74G0107 Tripterygium wilfordii HOM05D003208 ORTHO05D004103 2.8e-22 109.0 131 45.8
AUR62003252 Chenopodium quinoa HOM05D003208 ORTHO05D004103 3.7e-22 108.6 131 45.0
Peaxi162Scf00381g00061 Petunia axillaris HOM05D003208 ORTHO05D004103 3.7e-22 108.6 131 45.8
CiPaw.03G144800 Carya illinoinensis HOM05D003208 ORTHO05D004103 4.8e-22 108.2 131 45.8
CsaV3_6G045280 Cucumis sativus L. HOM05D003208 ORTHO05D004103 4.8e-22 108.2 131 45.8
Glyma.11G241400 Glycine max HOM05D003208 ORTHO05D004103 4.8e-22 108.2 131 45.0
TWI77G0296 Tripterygium wilfordii HOM05D003208 ORTHO05D004103 4.8e-22 108.2 131 44.3
ClCG01G018610 Citrullus lanatus HOM05D003208 ORTHO05D004103 6.3e-22 107.8 131 45.8
Medtr8g089980 Medicago truncatula HOM05D003208 ORTHO05D004103 6.3e-22 107.8 131 44.3
SalBow3G0841 Salvia bowleyana HOM05D003208 ORTHO05D004103 6.3e-22 107.8 131 43.5
SalBow3G1582 Salvia bowleyana HOM05D003208 ORTHO05D004103 6.3e-22 107.8 131 43.5
Ah.02g126130 Amaranthus hybridus HOM05D003208 ORTHO05D004103 8.2e-22 107.5 131 45.0
MELO3C007741.2 Cucumis melo HOM05D003208 ORTHO05D004103 8.2e-22 107.5 131 45.8
Phvul.001G253400 Phaseolus vulgaris HOM05D003208 ORTHO05D004103 1.1e-21 107.1 131 44.3
TPR.G6241 Trifolium pratense HOM05D003208 ORTHO05D004103 1.1e-21 107.1 131 42.7
unitig_699.g19581 Utricularia gibba HOM05D003208 ORTHO05D004103 1.1e-21 107.1 131 44.3
HPP92_013110 Vanilla planifolia HOM05D003208 ORTHO05D004103 1.1e-21 107.1 131 45.0
CAN.G151.12 Capsicum annuum HOM05D003208 ORTHO05D004103 1.4e-21 106.7 131 43.5
Cc07_g14750 Coffea canephora HOM05D003208 ORTHO05D004103 1.4e-21 106.7 131 42.0
Psat7g057040 Pisum sativum HOM05D003208 ORTHO05D004103 1.4e-21 106.7 131 43.5
VMungo0251G3398 Vigna mungo HOM05D003208 ORTHO05D004103 1.4e-21 106.7 131 43.5
EL10Ac6g14824 Beta vulgaris HOM05D003208 ORTHO05D004103 1.8e-21 106.3 131 44.3
Peaxi162Scf00044g00112 Petunia axillaris HOM05D003208 ORTHO05D004103 2.4e-21 105.9 131 42.7
Sp4g01430 Schrenkiella parvula HOM05D003208 ORTHO05D004103 2.4e-21 105.9 131 43.5
Sed0018597 Sechium edule HOM05D003208 ORTHO05D004103 3.1e-21 105.5 131 43.5
SHI01114 Sapria himalayana HOM05D003208 ORTHO05D004103 4.1e-21 105.1 131 43.5
AUR62027218 Chenopodium quinoa HOM05D003208 ORTHO05D004103 5.3e-21 104.8 131 43.5
Sed0002614 Sechium edule HOM05D003208 ORTHO05D004103 5.3e-21 104.8 131 43.5
Sc03g0000100 Simmondsia chinensis HOM05D003208 ORTHO05D004103 5.3e-21 104.8 131 45.0
Aa31LG7G14430 Aethionema arabicum HOM05D003208 ORTHO05D004103 6.9e-21 104.4 131 43.5
COL.COLO4_27282 Corchorus olitorius HOM05D003208 ORTHO05D004103 1.2e-20 103.6 129 44.2
PRCOL_00004940 Prasinoderma coloniale HOM05D003208 ORTHO05D004103 1.2e-20 103.6 132 41.7
TPR.G15995 Trifolium pratense HOM05D003208 ORTHO05D004103 1.2e-20 103.6 131 42.7
Ca_16514_v3 Cicer arietinum L. HOM05D003208 ORTHO05D004103 1.5e-20 103.2 131 43.5
Lalb_Chr23g0277531 Lupinus albus HOM05D003208 ORTHO05D004103 1.5e-20 103.2 131 42.0
Medtr3g086950 Medicago truncatula HOM05D003208 ORTHO05D004103 1.5e-20 103.2 131 42.7
BcaB08g35063 Brassica carinata HOM05D003208 ORTHO05D004103 2.0e-20 102.8 131 42.7
BcaC07g41076 Brassica carinata HOM05D003208 ORTHO05D004103 2.0e-20 102.8 131 42.7
A09p57600 Brassica napus HOM05D003208 ORTHO05D004103 2.0e-20 102.8 131 42.7
C08p40800 Brassica napus HOM05D003208 ORTHO05D004103 2.0e-20 102.8 131 42.7
BolC8t51644H Brassica oleracea HOM05D003208 ORTHO05D004103 2.0e-20 102.8 131 42.7
BraA09t41152Z Brassica rapa HOM05D003208 ORTHO05D004103 2.0e-20 102.8 131 42.7
Thhalv10000050m.g Eutrema salsugineum HOM05D003208 ORTHO05D004103 2.0e-20 102.8 131 42.7
Aa31LG6G15240 Aethionema arabicum HOM05D003208 ORTHO05D004103 3.4e-20 102.1 131 42.7
Psat5g090760 Pisum sativum HOM05D003208 ORTHO05D004103 3.4e-20 102.1 131 42.0
A04p16880 Brassica napus HOM05D003208 ORTHO05D004103 5.9e-20 101.3 131 42.7
C04p51440 Brassica napus HOM05D003208 ORTHO05D004103 5.9e-20 101.3 131 42.7
BolC4t26736H Brassica oleracea HOM05D003208 ORTHO05D004103 5.9e-20 101.3 131 42.7
BraA04t17321Z Brassica rapa HOM05D003208 ORTHO05D004103 5.9e-20 101.3 131 42.7
CARHR113590 Cardamine hirsuta HOM05D003208 ORTHO05D004103 5.9e-20 101.3 131 42.0
AL4G11900 Arabidopsis lyrata HOM05D003208 ORTHO05D004103 7.7e-20 100.9 131 42.0
AT2G22400 Arabidopsis thaliana HOM05D003208 ORTHO05D004103 7.7e-20 100.9 131 42.0
BcaC02g08664 Brassica carinata HOM05D003208 ORTHO05D004103 7.7e-20 100.9 131 42.7
Carub.0004s0156 Capsella rubella HOM05D003208 ORTHO05D004103 7.7e-20 100.9 131 42.0
Lj2A541T60 Lonicera japonica HOM05D003208 ORTHO05D004103 7.7e-20 100.9 132 45.5
Os08g0484400 Oryza sativa ssp. japonica HOM05D003208 ORTHO05D004103 5.0e-19 98.2 131 41.2
AL7G12310 Arabidopsis lyrata HOM05D003208 ORTHO05D004103 8.5e-19 97.4 131 40.5
Carub.0007s0196 Capsella rubella HOM05D003208 ORTHO05D004103 1.1e-18 97.1 131 39.7
Lj6g0024442 Lotus japonicus HOM05D003208 ORTHO05D004103 3.2e-18 95.5 131 41.2
MCO11G029 Micromonas commoda HOM05D003208 ORTHO05D004103 4.2e-18 95.1 131 42.7
CARHR246680 Cardamine hirsuta HOM05D003208 ORTHO05D004103 5.5e-18 94.7 131 39.7
Cre03.g179860 Chlamydomonas reinhardtii HOM05D003208 ORTHO05D004103 5.5e-18 94.7 131 38.9
Sp7g35870 Schrenkiella parvula HOM05D003208 ORTHO05D004103 5.5e-18 94.7 131 38.9
AT4G40000 Arabidopsis thaliana HOM05D003208 ORTHO05D004103 7.2e-18 94.4 131 39.7
Zm00001eb033550 Zea mays HOM05D003208 ORTHO05D004103 7.2e-18 94.4 131 40.5
Thhalv10024482m.g Eutrema salsugineum HOM05D003208 ORTHO05D004103 1.6e-17 93.2 131 39.7
MCO16G190 Micromonas commoda HOM05D003208 ORTHO05D004103 2.7e-17 92.4 131 38.9
C01p01050 Brassica napus HOM05D003208 ORTHO05D004103 3.6e-17 92.0 131 38.9
BolC1t00102H Brassica oleracea HOM05D003208 ORTHO05D004103 3.6e-17 92.0 131 38.9
BcaNung05188 Brassica carinata HOM05D003208 ORTHO05D004103 6.1e-17 91.3 131 38.2
Thhalv10000064m.g Eutrema salsugineum HOM05D003208 ORTHO05D004103 2.3e-16 89.4 131 37.4
PGR004G2195 Punica granatum HOM05D003208 ORTHO05D004103 2.3e-16 89.4 131 40.5
A01p00920 Brassica napus HOM05D003208 ORTHO05D004103 3.0e-16 89.0 131 36.6
BraA01t00090Z Brassica rapa HOM05D003208 ORTHO05D004103 3.0e-16 89.0 131 36.6
BcaNung00929 Brassica carinata HOM05D003208 ORTHO05D004103 8.8e-16 87.4 131 35.9
Cfa024691 Carpinus fangiana HOM05D003208 ORTHO05D005480 4.1e-13 78.6 131 32.8
Nitab4.5_0000128g0250 Nicotiana tabacum HOM05D003208 ORTHO05D004103 4.1e-13 78.6 122 38.5
PSO675G0168 Papaver somniferum HOM05D003208 ORTHO05D004103 2.6e-12 75.9 111 36.0
PSO675G5792 Papaver somniferum HOM05D003208 ORTHO05D004103 2.6e-12 75.9 111 36.0
Eucgr.I00532 Eucalyptus grandis HOM05D003208 ORTHO05D004103 3.8e-11 72.0 113 35.4
Lsat_1_v5_gn_6_82341 Lactuca sativa HOM05D003208 ORTHO05D013695 6.5e-11 71.2 113 38.9
HPP92_013098 Vanilla planifolia HOM05D003208 ORTHO05D004103 1.1e-10 70.5 61 57.4
Nitab4.5_0012684g0010 Nicotiana tabacum HOM05D003208 ORTHO05D004103 1.5e-10 70.1 115 37.4
BcaC02g08709 Brassica carinata HOM05D003208 ORTHO05D004103 5.5e-10 68.2 84 42.9
Psat7g145480 Pisum sativum HOM05D003208 ORTHO05D004103 1.6e-09 66.6 36 69.4


User provided reference genes

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