Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g61059 Chara braunii HOM05D004647 ORTHO05D005349 1.4e-102 376.3 190 100.0
Mapoly0033s0011 Marchantia polymorpha HOM05D004647 ORTHO05D005349 9.0e-54 214.2 233 50.2
Pp3c9_4960 Physcomitrium patens HOM05D004647 ORTHO05D005349 4.4e-53 211.8 233 51.5
DCAR_016485 Daucus carota HOM05D004647 ORTHO05D005349 6.9e-46 188.0 237 46.8
Medtr5g043110 Medicago truncatula HOM05D004647 ORTHO05D005349 3.4e-45 185.7 234 45.3
Lalb_Chr10g0098541 Lupinus albus HOM05D004647 ORTHO05D005349 7.6e-45 184.5 230 46.1
GSVIVG01007738001 Vitis vinifera HOM05D004647 ORTHO05D005349 7.6e-45 184.5 238 45.0
Lj5A124T65 Lonicera japonica HOM05D004647 ORTHO05D005349 3.8e-44 182.2 230 45.7
vmacro16607 Vaccinium macrocarpon HOM05D004647 ORTHO05D005349 3.8e-44 182.2 237 45.6
Aqoxy3G01032 Aquilegia oxysepala HOM05D004647 ORTHO05D005349 4.9e-44 181.8 232 46.1
Lj2g0019057 Lotus japonicus HOM05D004647 ORTHO05D005349 4.9e-44 181.8 237 43.9
Phvul.002G091200 Phaseolus vulgaris HOM05D004647 ORTHO05D005349 1.1e-43 180.6 229 45.0
ATR0680G372 Amborella trichopoda HOM05D004647 ORTHO05D005349 1.4e-43 180.3 225 46.2
arahy.Tifrunner.gnm1.ann1.HI7WIW Arachis hypogaea HOM05D004647 ORTHO05D005349 1.4e-43 180.3 234 44.4
arahy.Tifrunner.gnm1.ann1.T8C5SJ Arachis hypogaea HOM05D004647 ORTHO05D005349 1.4e-43 180.3 234 44.4
CANSAT64G1060 Cannabis sativa HOM05D004647 ORTHO05D005349 1.4e-43 180.3 226 44.7
Phvul.003G111100 Phaseolus vulgaris HOM05D004647 ORTHO05D005349 1.9e-43 179.9 229 45.4
Glyma.02G112000 Glycine max HOM05D004647 ORTHO05D005349 2.4e-43 179.5 234 44.0
Actinidia19099 Actinidia chinensis HOM05D004647 ORTHO05D005349 3.2e-43 179.1 237 45.1
TPR.G14966 Trifolium pratense HOM05D004647 ORTHO05D005349 3.2e-43 179.1 234 44.0
ClCG06G016990 Citrullus lanatus HOM05D004647 ORTHO05D005349 5.5e-43 178.3 227 45.4
Cc04_g13970 Coffea canephora HOM05D004647 ORTHO05D005349 5.5e-43 178.3 239 44.8
AUR62030968 Chenopodium quinoa HOM05D004647 ORTHO05D005349 7.1e-43 177.9 229 45.9
MBI16_g05634_MAGBIO Magnolia biondii HOM05D004647 ORTHO05D005349 7.1e-43 177.9 243 42.4
Psat2g127400 Pisum sativum HOM05D004647 ORTHO05D005349 7.1e-43 177.9 234 44.0
PGR083G2070 Punica granatum HOM05D004647 ORTHO05D005349 7.1e-43 177.9 234 44.0
HPP92_005895 Vanilla planifolia HOM05D004647 ORTHO05D005349 7.1e-43 177.9 228 43.0
Eucgr.B00371 Eucalyptus grandis HOM05D004647 ORTHO05D005349 9.3e-43 177.6 232 44.0
Hund09433 Selenicereus undatus HOM05D004647 ORTHO05D005349 9.3e-43 177.6 229 45.9
BcaB03g12733 Brassica carinata HOM05D004647 ORTHO05D005349 1.6e-42 176.8 231 43.7
TWI15G0781 Tripterygium wilfordii HOM05D004647 ORTHO05D005349 1.6e-42 176.8 235 43.4
CiPaw.11G026900 Carya illinoinensis HOM05D004647 ORTHO05D005349 2.1e-42 176.4 235 44.3
Glyma.01G053700 Glycine max HOM05D004647 ORTHO05D005349 2.1e-42 176.4 234 44.4
Hma1.2p1_0701F.1_g205920 Hydrangea macrophylla HOM05D004647 ORTHO05D005349 3.5e-42 175.6 229 44.1
Potri.012G080300 Populus trichocarpa HOM05D004647 ORTHO05D005349 3.5e-42 175.6 233 43.3
TPR.G19928 Trifolium pratense HOM05D004647 ORTHO05D005349 3.5e-42 175.6 234 43.6
Sabra12G0057400 Salix brachista HOM05D004647 ORTHO05D005349 4.6e-42 175.3 229 43.7
CARHR059710 Cardamine hirsuta HOM05D004647 ORTHO05D005349 6.0e-42 174.9 227 44.1
Sp7g29960 Schrenkiella parvula HOM05D004647 ORTHO05D005349 6.0e-42 174.9 233 44.2
THA.LOC104807116 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 7.9e-42 174.5 222 44.6
THA.LOC104824976 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 7.9e-42 174.5 222 44.6
Carub.0004s0503 Capsella rubella HOM05D004647 ORTHO05D005349 1.0e-41 174.1 231 43.3
Gohir.A03G097600 Gossypium hirsutum HOM05D004647 ORTHO05D005349 1.0e-41 174.1 239 44.4
Gorai.005G137000 Gossypium raimondii HOM05D004647 ORTHO05D005349 1.0e-41 174.1 239 44.4
PSO017G4490 Papaver somniferum HOM05D004647 ORTHO05D005349 1.0e-41 174.1 237 43.0
Prupe.5G174300 Prunus persica HOM05D004647 ORTHO05D005349 1.0e-41 174.1 230 43.5
Rhsim12G0164400 Rhododendron simsii HOM05D004647 ORTHO05D005349 1.0e-41 174.1 230 44.8
PSO478G0146 Papaver somniferum HOM05D004647 ORTHO05D005349 1.3e-41 173.7 237 43.0
Oeu035987.1 Olea europaea HOM05D004647 ORTHO05D005349 1.8e-41 173.3 239 42.3
AT2G25355 Arabidopsis thaliana HOM05D004647 ORTHO05D005349 2.3e-41 172.9 231 43.3
Gohir.D02G116700 Gossypium hirsutum HOM05D004647 ORTHO05D005349 2.3e-41 172.9 239 44.4
Sed0013198 Sechium edule HOM05D004647 ORTHO05D005349 3.0e-41 172.6 232 42.7
Ca_06453_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 3.9e-41 172.2 225 44.4
BcaC01g01036 Brassica carinata HOM05D004647 ORTHO05D005349 5.1e-41 171.8 233 43.3
A08p18330 Brassica napus HOM05D004647 ORTHO05D005349 5.1e-41 171.8 233 43.3
BolC3t21057H Brassica oleracea HOM05D004647 ORTHO05D005349 5.1e-41 171.8 233 43.3
BraA08t33790Z Brassica rapa HOM05D004647 ORTHO05D005349 5.1e-41 171.8 233 43.3
AL7G19680 Arabidopsis lyrata HOM05D004647 ORTHO05D005349 1.5e-40 170.2 233 43.3
MSTRG.11448 Avicennia marina HOM05D004647 ORTHO05D005349 1.5e-40 170.2 234 41.0
Nitab4.5_0000866g0170 Nicotiana tabacum HOM05D004647 ORTHO05D005349 1.5e-40 170.2 235 43.0
Atru.chr9.2461 Acer truncatum HOM05D004647 ORTHO05D005349 1.9e-40 169.9 234 41.9
Sc10g0010060 Simmondsia chinensis HOM05D004647 ORTHO05D005349 1.9e-40 169.9 238 42.4
EL10Ac5g10752 Beta vulgaris HOM05D004647 ORTHO05D005349 2.5e-40 169.5 223 45.3
Ciclev10021986m.g Citrus clementina HOM05D004647 ORTHO05D005349 2.5e-40 169.5 235 42.1
Nitab4.5_0000003g0580 Nicotiana tabacum HOM05D004647 ORTHO05D005349 5.6e-40 168.3 235 43.0
AL4G16790 Arabidopsis lyrata HOM05D004647 ORTHO05D005349 1.3e-39 167.2 231 42.0
FAN13G1078 Fragaria x ananassa HOM05D004647 ORTHO05D005349 1.3e-39 167.2 227 43.2
FAN08G1047 Fragaria x ananassa HOM05D004647 ORTHO05D005349 1.6e-39 166.8 227 43.2
Migut.I00016 Erythranthe guttata HOM05D004647 ORTHO05D005349 2.1e-39 166.4 237 40.9
FAN18G2734 Fragaria x ananassa HOM05D004647 ORTHO05D005349 2.1e-39 166.4 227 42.7
AUR62008215 Chenopodium quinoa HOM05D004647 ORTHO05D005349 2.8e-39 166.0 254 40.9
Lsat_1_v5_gn_4_75321 Lactuca sativa HOM05D004647 ORTHO05D005349 2.8e-39 166.0 237 41.8
Aa31LG2G17760 Aethionema arabicum HOM05D004647 ORTHO05D005349 4.8e-39 165.2 200 45.5
HanXRQChr16g0504011 Helianthus annuus HOM05D004647 ORTHO05D005349 4.8e-39 165.2 232 42.7
Sopen06g027740 Solanum pennellii HOM05D004647 ORTHO05D005349 6.2e-39 164.9 230 43.5
RcHm_v2.0_Chr7g0193601 Rosa chinensis HOM05D004647 ORTHO05D005349 8.1e-39 164.5 227 42.7
FAN04G0366 Fragaria x ananassa HOM05D004647 ORTHO05D005349 1.4e-38 163.7 226 42.5
QL10p011820 Quercus lobata HOM05D004647 ORTHO05D005349 1.4e-38 163.7 233 42.5
Solyc06g071460.3 Solanum lycopersicum HOM05D004647 ORTHO05D005349 1.4e-38 163.7 233 42.9
PGSC0003DMG400027091 Solanum tuberosum HOM05D004647 ORTHO05D005349 1.4e-38 163.7 230 42.6
AT4G32175 Arabidopsis thaliana HOM05D004647 ORTHO05D005349 4.0e-38 162.2 231 42.0
CAN.G628.78 Capsicum annuum HOM05D004647 ORTHO05D005349 4.0e-38 162.2 235 41.7
TWI53G1063 Tripterygium wilfordii HOM05D004647 ORTHO05D005349 4.0e-38 162.2 234 41.9
COL.COLO4_30028 Corchorus olitorius HOM05D004647 ORTHO05D005349 6.9e-38 161.4 267 38.6
ECA232G2959 Erigeron canadensis HOM05D004647 ORTHO05D005349 6.9e-38 161.4 232 41.4
Haze_07464 Corylus avellana HOM05D004647 ORTHO05D005349 9.0e-38 161.0 205 46.3
Manes.14G066300 Manihot esculenta HOM05D004647 ORTHO05D005349 9.0e-38 161.0 207 43.0
Os01g0891400 Oryza sativa ssp. japonica HOM05D004647 ORTHO05D005349 9.0e-38 161.0 232 42.2
CARHR240100 Cardamine hirsuta HOM05D004647 ORTHO05D005349 1.2e-37 160.6 231 41.1
SMO358G0755 Selaginella moellendorffii HOM05D004647 ORTHO05D005349 1.5e-37 160.2 227 42.7
Zm00001eb157720 Zea mays HOM05D004647 ORTHO05D005349 2.0e-37 159.8 235 40.9
Thhalv10026115m.g Eutrema salsugineum HOM05D004647 ORTHO05D005349 3.4e-37 159.1 233 41.2
Os01g0661400 Oryza sativa ssp. japonica HOM05D004647 ORTHO05D005349 4.5e-37 158.7 232 41.4
SGA_v2.0_scaffold90G27942 Striga asiatica HOM05D004647 ORTHO05D005349 1.3e-36 157.1 249 39.0
MD06G1174300 Malus domestica HOM05D004647 ORTHO05D005349 1.7e-36 156.8 233 42.9
HanXRQChr16g0526511 Helianthus annuus HOM05D004647 ORTHO05D005349 6.5e-36 154.8 229 41.5
Thecc.03G011300 Theobroma cacao HOM05D004647 ORTHO05D005349 1.1e-35 154.1 208 43.3
TAR374G0909 Trochodendron aralioides HOM05D004647 ORTHO05D005349 2.5e-35 152.9 195 44.1
unitig_52.g17486 Utricularia gibba HOM05D004647 ORTHO05D005349 7.1e-35 151.4 222 39.6
CSS0008435 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 1.2e-34 150.6 234 40.2
DCAR_028017 Daucus carota HOM05D004647 ORTHO05D005349 2.1e-34 149.8 195 45.1
CDE11G0116 Ceratophyllum demersum HOM05D004647 ORTHO05D005349 3.5e-34 149.1 197 42.6
FvH4_5g05270 Fragaria vesca HOM05D004647 ORTHO05D005349 7.9e-34 147.9 209 41.1
Cpa.g.sc124.56 Carica papaya HOM05D004647 ORTHO05D005349 1.8e-33 146.7 194 44.3
Zm00001eb157740 Zea mays HOM05D004647 ORTHO05D005349 2.3e-33 146.4 202 41.6
FAN18G2015 Fragaria x ananassa HOM05D004647 ORTHO05D005349 6.7e-33 144.8 282 34.0
SalBow3G4197 Salvia bowleyana HOM05D004647 ORTHO05D005349 8.7e-33 144.4 274 34.3
Cre07.g319900 Chlamydomonas reinhardtii HOM05D004647 ORTHO05D005349 2.5e-32 142.9 225 38.7
MD06G1174500 Malus domestica HOM05D004647 ORTHO05D005349 3.3e-32 142.5 234 40.2
Peaxi162Scf00689g00228 Petunia axillaris HOM05D004647 ORTHO05D005349 3.1e-30 136.0 199 41.2
QL02p100995 Quercus lobata HOM05D004647 ORTHO05D005349 4.1e-30 135.6 335 31.3
AagrBONN_evm.TU.Sc2ySwM_117.3294 Anthoceros agrestis HOM05D004647 ORTHO05D005349 9.0e-30 134.4 195 41.5
Carub.0007s0838 Capsella rubella HOM05D004647 ORTHO05D005349 9.0e-30 134.4 189 41.3
SEGI_17588 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 9.3e-27 124.4 140 50.0
SEGI_39775 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 9.3e-27 124.4 140 50.0
THA.LOC104815465 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 4.6e-26 122.1 145 46.2
SEGI_00924 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 6.7e-25 118.2 93 63.4
VMungo1215G3307 Vigna mungo HOM05D004647 ORTHO05D005349 3.3e-24 115.9 93 61.3
CsaV3_1G001530 Cucumis sativus L. HOM05D004647 ORTHO05D005349 6.5e-20 101.7 163 38.0
Dinv02900 Davidia involucrata HOM05D004647 ORTHO05D005349 1.1e-19 100.9 165 37.6
CSS0025503 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 1.9e-19 100.1 123 48.0
Medtr5g009430 Medicago truncatula HOM05D004647 ORTHO05D005349 2.5e-19 99.8 93 52.7
QL02p101061 Quercus lobata HOM05D004647 ORTHO05D005349 5.5e-19 98.6 90 56.7
QL02p101105 Quercus lobata HOM05D004647 ORTHO05D005349 9.4e-19 97.8 89 56.2
CSS0039197 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 1.6e-18 97.1 91 56.0
Nn3g16872 Nelumbo nucifera HOM05D004647 ORTHO05D005349 1.8e-17 93.6 111 45.0
THA.LOC104801749 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 1.8e-17 93.6 152 36.8
PRCOL_00002933 Prasinoderma coloniale HOM05D004647 ORTHO05D005349 2.3e-17 93.2 200 36.0
Sed0007118 Sechium edule HOM05D004647 ORTHO05D005349 6.7e-17 91.7 150 37.3
VMungo1215G1703 Vigna mungo HOM05D004647 ORTHO05D005349 2.0e-16 90.1 114 43.0
MELO3C026290.2 Cucumis melo HOM05D004647 ORTHO05D005349 1.7e-15 87.0 114 42.1
Potri.015G075400 Populus trichocarpa HOM05D004647 ORTHO05D005349 9.1e-14 81.3 78 52.6
Ca_07701_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 1.3e-12 77.4 103 42.7
PGSC0003DMG400042364 Solanum tuberosum HOM05D004647 ORTHO05D005349 5.0e-12 75.5 68 51.5
CAN.G110.1 Capsicum annuum HOM05D004647 ORTHO05D005349 2.5e-11 73.2 90 42.2
SEGI_26695 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 7.2e-11 71.6 64 54.7
Zm00001eb359590 Zea mays HOM05D004647 ORTHO05D005349 1.6e-10 70.5 131 35.1
Cfa024128 Carpinus fangiana HOM05D004647 ORTHO05D005349 3.0e-09 66.2 236 28.8
Ca_22423_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 3.0e-09 66.2 90 46.7
PSO384G3338 Papaver somniferum HOM05D004647 ORTHO05D005349 5.7e-08 62.0 147 32.0
CSS0048825 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 1.3e-07 60.8 58 48.3


User provided reference genes

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