Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g54934 Chara braunii HOM05D004330 ORTHO05D005182 6.0e-217 757.3 399 100.0
Mapoly0091s0001 Marchantia polymorpha HOM05D004330 ORTHO05D005182 1.1e-138 497.3 361 70.4
AagrBONN_evm.TU.Sc2ySwM_228.5612 Anthoceros agrestis HOM05D004330 ORTHO05D005182 7.5e-135 484.6 381 64.6
AagrBONN_evm.TU.Sc2ySwM_228.5613 Anthoceros agrestis HOM05D004330 ORTHO05D005182 7.5e-135 484.6 381 64.6
Pp3c4_27380 Physcomitrium patens HOM05D004330 ORTHO05D005182 1.1e-130 470.7 387 64.3
SMO304G0018 Selaginella moellendorffii HOM05D004330 ORTHO05D005182 1.1e-130 470.7 368 66.8
Actinidia16901 Actinidia chinensis HOM05D004330 ORTHO05D005182 1.2e-124 450.7 359 63.8
ATR0580G447 Amborella trichopoda HOM05D004330 ORTHO05D005182 1.2e-124 450.7 381 61.4
Ciclev10019077m.g Citrus clementina HOM05D004330 ORTHO05D005182 3.5e-124 449.1 359 64.3
Lj5g0027584 Lotus japonicus HOM05D004330 ORTHO05D005182 3.5e-124 449.1 359 63.0
CSS0001083 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 4.5e-124 448.7 359 63.8
PGR031G1280 Punica granatum HOM05D004330 ORTHO05D005182 7.7e-124 448.0 359 63.5
GSVIVG01012102001 Vitis vinifera HOM05D004330 ORTHO05D005182 2.3e-123 446.4 359 63.0
Manes.15G103100 Manihot esculenta HOM05D004330 ORTHO05D005182 2.9e-123 446.0 359 63.5
Prupe.1G566400 Prunus persica HOM05D004330 ORTHO05D005182 8.6e-123 444.5 359 63.0
MBI16_g23303_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 1.1e-122 444.1 401 58.9
Nn6g32085 Nelumbo nucifera HOM05D004330 ORTHO05D005182 1.1e-122 444.1 368 62.2
Atru.chr13.2589 Acer truncatum HOM05D004330 ORTHO05D005182 1.9e-122 443.4 359 62.4
BolC6t39595H Brassica oleracea HOM05D004330 ORTHO05D005182 1.9e-122 443.4 368 61.1
Dinv22060 Davidia involucrata HOM05D004330 ORTHO05D005182 1.9e-122 443.4 359 62.7
Eucgr.C04264 Eucalyptus grandis HOM05D004330 ORTHO05D005182 1.9e-122 443.4 359 63.0
Sp5g26470 Schrenkiella parvula HOM05D004330 ORTHO05D005182 1.9e-122 443.4 368 61.7
Actinidia29358 Actinidia chinensis HOM05D004330 ORTHO05D005182 2.5e-122 443.0 359 63.2
A07p37610 Brassica napus HOM05D004330 ORTHO05D005182 4.2e-122 442.2 368 61.1
arahy.Tifrunner.gnm1.ann1.7LJM3H Arachis hypogaea HOM05D004330 ORTHO05D005182 5.6e-122 441.8 359 63.0
arahy.Tifrunner.gnm1.ann1.A4ASB6 Arachis hypogaea HOM05D004330 ORTHO05D005182 5.6e-122 441.8 359 63.0
arahy.Tifrunner.gnm1.ann1.KU2W2N Arachis hypogaea HOM05D004330 ORTHO05D005182 5.6e-122 441.8 359 63.0
Carub.0002s1815 Capsella rubella HOM05D004330 ORTHO05D005182 7.2e-122 441.4 368 61.7
AUR62024682 Chenopodium quinoa HOM05D004330 ORTHO05D005182 7.2e-122 441.4 359 63.2
TAR628G0944 Trochodendron aralioides HOM05D004330 ORTHO05D005182 7.2e-122 441.4 349 63.9
EL10As5g23498 Beta vulgaris HOM05D004330 ORTHO05D005182 9.5e-122 441.0 359 63.0
BcaB03g14885 Brassica carinata HOM05D004330 ORTHO05D005182 9.5e-122 441.0 368 60.9
BcaC08g46563 Brassica carinata HOM05D004330 ORTHO05D005182 9.5e-122 441.0 368 60.9
C06p45370 Brassica napus HOM05D004330 ORTHO05D005182 9.5e-122 441.0 368 60.9
Duzib177G1138 Durio zibethinus HOM05D004330 ORTHO05D005182 9.5e-122 441.0 367 61.9
Glyma.03G252000 Glycine max HOM05D004330 ORTHO05D005182 9.5e-122 441.0 359 62.1
RcHm_v2.0_Chr6g0249411 Rosa chinensis HOM05D004330 ORTHO05D005182 9.5e-122 441.0 359 62.4
Solyc02g094090.4 Solanum lycopersicum HOM05D004330 ORTHO05D005182 9.5e-122 441.0 359 62.7
Sopen02g038710 Solanum pennellii HOM05D004330 ORTHO05D005182 9.5e-122 441.0 359 62.7
AL2G30885 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 1.2e-121 440.7 368 61.1
AT1G71270 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 1.6e-121 440.3 368 61.1
Cfa008036 Carpinus fangiana HOM05D004330 ORTHO05D005182 1.6e-121 440.3 359 61.8
VMungo0540G0979 Vigna mungo HOM05D004330 ORTHO05D005182 1.6e-121 440.3 359 62.4
QL09p001201 Quercus lobata HOM05D004330 ORTHO05D005182 2.1e-121 439.9 367 60.8
Cpa.g.sc249.10 Carica papaya HOM05D004330 ORTHO05D005182 2.8e-121 439.5 359 62.1
Gohir.D05G252400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 3.6e-121 439.1 367 61.9
Cc10_g16170 Coffea canephora HOM05D004330 ORTHO05D005182 4.7e-121 438.7 349 63.9
Gohir.A05G251400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 4.7e-121 438.7 367 61.9
Gorai.009G264800 Gossypium raimondii HOM05D004330 ORTHO05D005182 4.7e-121 438.7 367 61.9
Nitab4.5_0000079g0120 Nicotiana tabacum HOM05D004330 ORTHO05D005182 4.7e-121 438.7 359 62.1
MD08G1244900 Malus domestica HOM05D004330 ORTHO05D005182 8.0e-121 438.0 360 63.1
CAN.G473.93 Capsicum annuum HOM05D004330 ORTHO05D005182 1.0e-120 437.6 359 62.1
Thhalv10018205m.g Eutrema salsugineum HOM05D004330 ORTHO05D005182 1.0e-120 437.6 383 59.8
Thecc.08G188100 Theobroma cacao HOM05D004330 ORTHO05D005182 1.0e-120 437.6 384 60.4
Aa31LG4G9240 Aethionema arabicum HOM05D004330 ORTHO05D005182 1.4e-120 437.2 392 58.7
CiPaw.03G012300 Carya illinoinensis HOM05D004330 ORTHO05D005182 1.4e-120 437.2 359 61.8
Glyma.19G249400 Glycine max HOM05D004330 ORTHO05D005182 1.4e-120 437.2 359 61.6
Phvul.006G106700 Phaseolus vulgaris HOM05D004330 ORTHO05D005182 1.4e-120 437.2 359 61.8
Sc17g0000550 Simmondsia chinensis HOM05D004330 ORTHO05D005182 1.8e-120 436.8 359 61.6
Aqoxy5G00868 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 2.3e-120 436.4 371 59.8
BraA07t31323Z Brassica rapa HOM05D004330 ORTHO05D005182 2.3e-120 436.4 369 60.7
Peaxi162Scf00078g01141 Petunia axillaris HOM05D004330 ORTHO05D005182 2.3e-120 436.4 359 62.1
Oeu020638.1 Olea europaea HOM05D004330 ORTHO05D005182 4.0e-120 435.6 359 62.4
ECA246G0284 Erigeron canadensis HOM05D004330 ORTHO05D005182 5.2e-120 435.3 359 61.8
Potri.006G027100 Populus trichocarpa HOM05D004330 ORTHO05D005182 6.8e-120 434.9 357 61.6
THA.LOC104803377 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 6.8e-120 434.9 368 61.7
Hma1.2p1_0016F.1_g011010 Hydrangea macrophylla HOM05D004330 ORTHO05D005182 8.9e-120 434.5 359 62.1
MD15G1440000 Malus domestica HOM05D004330 ORTHO05D005182 8.9e-120 434.5 383 59.8
Ah.11g049400 Amaranthus hybridus HOM05D004330 ORTHO05D005182 1.2e-119 434.1 385 59.7
PSO210G1668 Papaver somniferum HOM05D004330 ORTHO05D005182 1.5e-119 433.7 368 60.6
PSO761G0081 Papaver somniferum HOM05D004330 ORTHO05D005182 1.5e-119 433.7 368 60.6
Sabra06G0020300 Salix brachista HOM05D004330 ORTHO05D005182 1.5e-119 433.7 357 61.3
Lalb_Chr04g0261991 Lupinus albus HOM05D004330 ORTHO05D005182 2.0e-119 433.3 381 58.5
HanXRQChr05g0150611 Helianthus annuus HOM05D004330 ORTHO05D005182 5.7e-119 431.8 359 60.7
Rhsim01G0101300 Rhododendron simsii HOM05D004330 ORTHO05D005182 5.7e-119 431.8 378 60.3
Nitab4.5_0007117g0020 Nicotiana tabacum HOM05D004330 ORTHO05D005182 7.5e-119 431.4 359 61.8
Medtr1g079770 Medicago truncatula HOM05D004330 ORTHO05D005182 9.8e-119 431.0 381 58.8
FvH4_2g00140 Fragaria vesca HOM05D004330 ORTHO05D005182 2.2e-118 429.9 359 60.7
Lj7C415G17 Lonicera japonica HOM05D004330 ORTHO05D005182 2.2e-118 429.9 392 57.1
CSS0008451 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 3.7e-118 429.1 361 60.9
TWI12G0377 Tripterygium wilfordii HOM05D004330 ORTHO05D005182 4.9e-118 428.7 360 62.2
AL2G30900 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 3.2e-117 426.0 373 59.0
COL.COLO4_33595 Corchorus olitorius HOM05D004330 ORTHO05D005182 7.0e-117 424.9 397 57.9
DCAR_024855 Daucus carota HOM05D004330 ORTHO05D005182 1.2e-116 424.1 382 58.9
FAN24G1765 Fragaria x ananassa HOM05D004330 ORTHO05D005182 1.2e-116 424.1 363 60.1
vmacro06107 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 1.2e-116 424.1 360 61.7
MSTRG.22475 Avicennia marina HOM05D004330 ORTHO05D005182 2.0e-116 423.3 349 61.6
Aqoxy2G00735 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 2.7e-116 422.9 371 58.8
CANSAT01G1169 Cannabis sativa HOM05D004330 ORTHO05D005182 3.5e-116 422.5 359 59.1
FAN19G3045 Fragaria x ananassa HOM05D004330 ORTHO05D005182 3.5e-116 422.5 372 58.6
Psat6g142240 Pisum sativum HOM05D004330 ORTHO05D005182 4.6e-116 422.2 359 60.4
Carub.0002s1817 Capsella rubella HOM05D004330 ORTHO05D005182 5.9e-116 421.8 368 59.0
CiPaw.04G008600 Carya illinoinensis HOM05D004330 ORTHO05D005182 1.3e-115 420.6 359 59.6
Ca_09987_v3 Cicer arietinum L. HOM05D004330 ORTHO05D005182 1.7e-115 420.2 359 60.2
TPR.G10262 Trifolium pratense HOM05D004330 ORTHO05D005182 5.0e-115 418.7 359 59.9
Lsat_1_v5_gn_6_109860 Lactuca sativa HOM05D004330 ORTHO05D005182 6.6e-115 418.3 359 59.9
THA.LOC104823378 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 1.1e-114 417.5 368 59.8
Nitab4.5_0002887g0010 Nicotiana tabacum HOM05D004330 ORTHO05D005182 1.9e-114 416.8 345 62.0
Nitab4.5_0007150g0080 Nicotiana tabacum HOM05D004330 ORTHO05D005182 1.9e-114 416.8 368 59.0
SHI24508 Sapria himalayana HOM05D004330 ORTHO05D005182 1.9e-114 416.8 358 60.9
SalBow6G7193 Salvia bowleyana HOM05D004330 ORTHO05D005182 3.3e-114 416.0 386 57.0
Os03g0417900 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 4.3e-114 415.6 383 56.9
Migut.G00904 Erythranthe guttata HOM05D004330 ORTHO05D005182 9.5e-114 414.5 359 58.2
CsaV3_2G033380 Cucumis sativus L. HOM05D004330 ORTHO05D005182 1.2e-113 414.1 359 59.1
AT1G71300 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 6.2e-113 411.8 355 59.2
Sed0024292 Sechium edule HOM05D004330 ORTHO05D005182 6.2e-113 411.8 359 59.6
ClCG11G008260 Citrullus lanatus HOM05D004330 ORTHO05D005182 1.4e-112 410.6 359 58.5
MELO3C008109.2 Cucumis melo HOM05D004330 ORTHO05D005182 3.7e-110 402.5 377 56.0
unitig_37.g12692 Utricularia gibba HOM05D004330 ORTHO05D005182 3.7e-110 402.5 359 57.7
SalBow6G1408 Salvia bowleyana HOM05D004330 ORTHO05D005182 3.5e-108 396.0 330 61.5
Cre08.g367200 Chlamydomonas reinhardtii HOM05D004330 ORTHO05D005182 1.8e-96 357.1 352 51.1
AUR62011839 Chenopodium quinoa HOM05D004330 ORTHO05D005182 1.1e-93 347.8 273 64.8
Os10g0488300 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 5.4e-93 345.5 370 49.2
COL.COLO4_37491 Corchorus olitorius HOM05D004330 ORTHO05D005182 6.6e-91 338.6 273 63.4
HPP92_006305 Vanilla planifolia HOM05D004330 ORTHO05D005182 5.6e-90 335.5 266 62.8
MCO11G104 Micromonas commoda HOM05D004330 ORTHO05D005182 5.1e-83 312.4 353 48.4
Zm00001eb045280 Zea mays HOM05D004330 ORTHO05D005182 5.1e-83 312.4 357 46.5
HPP92_006235 Vanilla planifolia HOM05D004330 ORTHO05D005182 1.1e-82 311.2 263 61.6
Zm00001eb393130 Zea mays HOM05D004330 ORTHO05D005182 5.8e-79 298.9 247 59.5
Hund19537 Selenicereus undatus HOM05D004330 ORTHO05D005182 1.3e-75 287.7 234 62.8
PRCOL_00005416 Prasinoderma coloniale HOM05D004330 ORTHO05D005182 2.8e-73 280.0 395 42.3
CDE03G0281 Ceratophyllum demersum HOM05D004330 ORTHO05D005182 6.9e-72 275.4 250 58.0
Haze_02242 Corylus avellana HOM05D004330 ORTHO05D005182 5.6e-66 255.8 366 42.3
vmacro23409 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 9.6e-66 255.0 271 51.7
FvH4_6g22200 Fragaria vesca HOM05D004330 ORTHO05D005182 4.2e-53 213.0 192 57.8
SEGI_21093 Sequoiadendron giganteum HOM05D004330 ORTHO05D005182 1.0e-43 181.8 131 67.9
FAN14G0768 Fragaria x ananassa HOM05D004330 ORTHO05D005182 1.5e-42 177.9 192 51.6
QL04p036179 Quercus lobata HOM05D004330 ORTHO05D037441 1.4e-35 154.8 180 48.9
QL09p008022 Quercus lobata HOM05D004330 ORTHO05D005182 1.3e-33 148.3 217 41.5
Hund19535 Selenicereus undatus HOM05D004330 ORTHO05D005182 2.4e-32 144.1 113 63.7
Nitab4.5_0006062g0030 Nicotiana tabacum HOM05D004330 ORTHO05D005182 3.1e-32 143.7 122 59.8
CDE03G0141 Ceratophyllum demersum HOM05D004330 ORTHO05D005182 7.7e-31 139.0 104 70.2
Cfa027264 Carpinus fangiana HOM05D004330 ORTHO05D005182 1.1e-26 125.2 263 32.3
SEGI_19884 Sequoiadendron giganteum HOM05D004330 ORTHO05D005182 1.1e-26 125.2 111 55.9
Rhsim02G0174700 Rhododendron simsii HOM05D004330 ORTHO05D005182 4.1e-24 116.7 104 55.8
HPP92_006236 Vanilla planifolia HOM05D004330 ORTHO05D005182 6.8e-19 99.4 58 77.6
CARHR152420 Cardamine hirsuta HOM05D004330 ORTHO05D005182 4.1e-16 90.1 143 36.4
MBI13_g40628_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 5.2e-11 73.2 39 82.1
CARHR064590 Cardamine hirsuta HOM05D004330 ORTHO05D005182 4.4e-10 70.1 120 40.0
Zm00001eb294100 Zea mays HOM05D003702 ORTHO05D004653 5.7e-10 69.7 55 61.8
Zm00001eb371470 Zea mays HOM05D003702 ORTHO05D004653 1.3e-09 68.6 40 75.0
COL.COLO4_23503 Corchorus olitorius HOM05D004330 ORTHO05D005182 3.7e-09 67.0 69 53.6
Zm00001eb378040 Zea mays HOM05D004330 ORTHO05D000629 6.3e-09 66.2 39 74.4
Haze_14000 Corylus avellana HOM05D004330 ORTHO05D005182 3.1e-08 63.9 61 52.5
C06p46260 Brassica napus HOM05D004330 ORTHO05D005182 9.2e-08 62.4 44 61.4
EL10Ac2g03375 Beta vulgaris HOM05D015602 ORTHO05D006373 1.2e-07 62.0 87 42.5
C06p46170 Brassica napus HOM05D004330 ORTHO05D005182 1.2e-07 62.0 42 64.3
C06p46210 Brassica napus HOM05D004330 ORTHO05D005182 1.2e-07 62.0 42 64.3


User provided reference genes

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