Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g51075 Chara braunii HOM05D017404 ORTHO05D018359 0.0e+00 1899.0 1055 100.0
Mapoly0086s0050 Marchantia polymorpha HOM05D017404 ORTHO05D018359 4.8e-266 921.8 733 58.7
Pp3c12_9400 Physcomitrium patens HOM05D017404 ORTHO05D018359 3.7e-258 895.6 751 55.9
Cre03.g204150 Chlamydomonas reinhardtii HOM05D017404 ORTHO05D018359 5.4e-241 838.6 736 53.5
AagrBONN_evm.TU.Sc2ySwM_344.3398 Anthoceros agrestis HOM05D017404 ORTHO05D018359 2.2e-218 763.5 674 53.6
SMO137G0016 Selaginella moellendorffii HOM05D017404 ORTHO05D018359 9.0e-212 741.5 732 49.2
PRCOL_00001385 Prasinoderma coloniale HOM05D017404 ORTHO05D018359 1.8e-199 700.7 768 46.6
MCO10G140 Micromonas commoda HOM05D017404 ORTHO05D018359 1.6e-192 677.6 776 44.6
Cc07_g06500 Coffea canephora HOM05D002634 ORTHO05D003100 5.0e-13 81.3 194 25.8
Pp3c21_8450 Physcomitrium patens HOM05D011303 ORTHO05D018349 1.1e-12 80.1 587 21.3
MCO09G748 Micromonas commoda HOM05D011303 ORTHO05D018349 1.2e-11 76.6 776 21.3
MBI02_g01118_MAGBIO Magnolia biondii HOM05D000464 ORTHO05D006292 4.7e-11 74.7 209 24.4
Prupe.6G226500 Prunus persica HOM05D002634 ORTHO05D003100 6.8e-10 70.9 192 26.0
Dinv26878 Davidia involucrata HOM05D002634 ORTHO05D003100 1.2e-09 70.1 265 22.3
MD15G1290400 Malus domestica HOM05D002634 ORTHO05D003100 1.2e-09 70.1 194 25.8
Actinidia03814 Actinidia chinensis HOM05D002634 ORTHO05D003100 1.5e-09 69.7 132 27.3
Actinidia08243 Actinidia chinensis HOM05D002634 ORTHO05D003100 1.5e-09 69.7 132 27.3
TWI09G1405 Tripterygium wilfordii HOM05D002634 ORTHO05D003100 2.0e-09 69.3 192 24.0
GSVIVG01000179001 Vitis vinifera HOM05D002634 ORTHO05D003100 2.0e-09 69.3 192 25.5
MD02G1179800 Malus domestica HOM05D002634 ORTHO05D003100 2.6e-09 68.9 192 25.5
ClCG01G017150 Citrullus lanatus HOM05D002634 ORTHO05D003100 4.4e-09 68.2 192 25.0
Haze_15337 Corylus avellana HOM05D002634 ORTHO05D003100 5.8e-09 67.8 195 27.7
Hund16370 Selenicereus undatus HOM05D002634 ORTHO05D003100 5.8e-09 67.8 195 25.1
Gohir.D03G025900 Gossypium hirsutum HOM05D002634 ORTHO05D003100 7.5e-09 67.4 206 24.8
HanXRQChr14g0449681 Helianthus annuus HOM05D002634 ORTHO05D003100 7.5e-09 67.4 122 31.1
RcHm_v2.0_Chr2g0107021 Rosa chinensis HOM05D002634 ORTHO05D003100 7.5e-09 67.4 192 26.6
Sed0022856 Sechium edule HOM05D002634 ORTHO05D003100 7.5e-09 67.4 152 27.6
Solyc12g088570.3 Solanum lycopersicum HOM05D002634 ORTHO05D003100 7.5e-09 67.4 197 25.4
Cfa004076 Carpinus fangiana HOM05D002634 ORTHO05D003100 9.8e-09 67.0 195 27.7
Medtr1g097140 Medicago truncatula HOM05D003913 ORTHO05D004803 9.8e-09 67.0 245 23.3
PGR004G2669 Punica granatum HOM05D002634 ORTHO05D003100 9.8e-09 67.0 192 24.5
Gohir.A02G154600 Gossypium hirsutum HOM05D002634 ORTHO05D003100 1.3e-08 66.6 206 24.8
Gorai.003G027600 Gossypium raimondii HOM05D002634 ORTHO05D003100 1.3e-08 66.6 206 24.8
MELO3C007593.2 Cucumis melo HOM05D002634 ORTHO05D003100 1.7e-08 66.2 192 26.0
CsaV3_6G043670 Cucumis sativus L. HOM05D002634 ORTHO05D003100 2.2e-08 65.9 192 24.5
PSO782G2206 Papaver somniferum HOM05D002634 ORTHO05D003100 2.2e-08 65.9 194 26.3
QL06p040017 Quercus lobata HOM05D002634 ORTHO05D003100 2.2e-08 65.9 255 22.4
Gohir.A11G047800 Gossypium hirsutum HOM05D002634 ORTHO05D003100 2.9e-08 65.5 232 23.3
Nitab4.5_0000838g0220 Nicotiana tabacum HOM05D002634 ORTHO05D003100 3.7e-08 65.1 130 26.9
TWI73G0945 Tripterygium wilfordii HOM05D002634 ORTHO05D003100 3.7e-08 65.1 192 23.4
Ciclev10025285m.g Citrus clementina HOM05D002634 ORTHO05D003100 4.9e-08 64.7 192 24.0
Manes.13G116500 Manihot esculenta HOM05D002634 ORTHO05D003100 4.9e-08 64.7 194 23.7
AagrBONN_evm.TU.Sc2ySwM_369.461 Anthoceros agrestis HOM05D003406 ORTHO05D004026 6.4e-08 64.3 161 29.2
Ca_13940_v3 Cicer arietinum L. HOM05D002634 ORTHO05D003100 6.4e-08 64.3 175 28.0
Haze_26121 Corylus avellana HOM05D002634 ORTHO05D003100 6.4e-08 64.3 135 28.1
Potri.007G050100 Populus trichocarpa HOM05D002634 ORTHO05D003100 6.4e-08 64.3 192 22.9
Zm00001eb419800 Zea mays HOM05D002634 ORTHO05D003100 6.4e-08 64.3 238 25.2
CBR_g33929 Chara braunii HOM05D000526 ORTHO05D000956 1.1e-07 63.5 210 24.3
AL8G44010 Arabidopsis lyrata HOM05D002634 ORTHO05D003100 1.4e-07 63.2 199 24.6
arahy.Tifrunner.gnm1.ann1.8C3BXP Arachis hypogaea HOM05D002634 ORTHO05D003100 1.4e-07 63.2 192 23.4
arahy.Tifrunner.gnm1.ann1.KSX8X1 Arachis hypogaea HOM05D002634 ORTHO05D003100 1.4e-07 63.2 192 23.4
CSS0014373 Camellia sinensis var. sinensis HOM05D002634 ORTHO05D003100 1.4e-07 63.2 193 24.9
CSS0045917 Camellia sinensis var. sinensis HOM05D002634 ORTHO05D003100 1.4e-07 63.2 193 24.9
Haze_18089 Corylus avellana HOM05D002634 ORTHO05D003100 1.4e-07 63.2 193 24.9
Gorai.007G055800 Gossypium raimondii HOM05D002634 ORTHO05D003100 1.4e-07 63.2 208 25.0
Sabra07G0044500 Salix brachista HOM05D002634 ORTHO05D003100 1.4e-07 63.2 192 22.9
THA.LOC104821238 Tarenaya hassleriana HOM05D002634 ORTHO05D003100 1.4e-07 63.2 200 25.0
ATR0041G007 Amborella trichopoda HOM05D002634 ORTHO05D003100 1.9e-07 62.8 193 24.9
A10p10940 Brassica napus HOM05D000645 ORTHO05D000494 1.9e-07 62.8 232 25.9
Cfa018035 Carpinus fangiana HOM05D002634 ORTHO05D003100 1.9e-07 62.8 193 24.4
Phvul.003G239000 Phaseolus vulgaris HOM05D002634 ORTHO05D003100 1.9e-07 62.8 230 23.5
Thecc.01G065500 Theobroma cacao HOM05D002634 ORTHO05D003100 1.9e-07 62.8 206 23.8
CBR_g41292 Chara braunii HOM05D000526 ORTHO05D000956 2.4e-07 62.4 210 24.3
Thhalv10011347m.g Eutrema salsugineum HOM05D000645 ORTHO05D000494 2.4e-07 62.4 183 27.3
BcaB07g33712 Brassica carinata HOM05D000645 ORTHO05D000494 3.2e-07 62.0 178 26.4
CiPaw.01G009600 Carya illinoinensis HOM05D002634 ORTHO05D003100 3.2e-07 62.0 194 25.3
Dinv35913 Davidia involucrata HOM05D002634 ORTHO05D003100 3.2e-07 62.0 192 25.0
Migut.F00740 Erythranthe guttata HOM05D001260 ORTHO05D004134 3.2e-07 62.0 256 22.7
Manes.12G109000 Manihot esculenta HOM05D002634 ORTHO05D003100 3.2e-07 62.0 194 23.7
Medtr8g092890 Medicago truncatula HOM05D000645 ORTHO05D000494 3.2e-07 62.0 171 27.5
AT5G67320 Arabidopsis thaliana HOM05D002634 ORTHO05D003100 4.1e-07 61.6 199 24.1
Duzib264G1043 Durio zibethinus HOM05D002634 ORTHO05D003100 4.1e-07 61.6 232 22.8
Eucgr.I00742 Eucalyptus grandis HOM05D002634 ORTHO05D003100 4.1e-07 61.6 192 22.9
SGA_v2.0_scaffold221G42704 Striga asiatica HOM05D001260 ORTHO05D004134 4.1e-07 61.6 245 25.7
Atru.chr3.237 Acer truncatum HOM05D002634 ORTHO05D003100 5.4e-07 61.2 188 23.9
Aqoxy5G01132 Aquilegia oxysepala HOM05D002634 ORTHO05D003100 5.4e-07 61.2 194 24.7
Lj4A762T8 Lonicera japonica HOM05D002634 ORTHO05D003100 5.4e-07 61.2 221 22.6
Nn5g30448 Nelumbo nucifera HOM05D002634 ORTHO05D003100 5.4e-07 61.2 192 24.5
PRCOL_00000660 Prasinoderma coloniale HOM05D002634 ORTHO05D003100 5.4e-07 61.2 197 25.4
Solyc11g005710.2 Solanum lycopersicum HOM05D000645 ORTHO05D000494 5.4e-07 61.2 226 23.9
Solyc12g088540.3 Solanum lycopersicum HOM05D002634 ORTHO05D003100 5.4e-07 61.2 189 23.3
Zm00001eb088250 Zea mays HOM05D002634 ORTHO05D003100 5.4e-07 61.2 238 24.4
BraA10t43185Z Brassica rapa HOM05D000645 ORTHO05D000494 7.0e-07 60.8 220 25.9
Carub.0008s2717 Capsella rubella HOM05D002634 ORTHO05D003100 7.0e-07 60.8 199 24.1
CDE12G0044 Ceratophyllum demersum HOM05D000526 ORTHO05D000956 7.0e-07 60.8 312 25.0
Sp1g35780 Schrenkiella parvula HOM05D000645 ORTHO05D000494 7.0e-07 60.8 178 26.4
Sopen12g030510 Solanum pennellii HOM05D002634 ORTHO05D003100 7.0e-07 60.8 189 23.3
SGA_v2.0_scaffold2G01050 Striga asiatica HOM05D001260 ORTHO05D004134 7.0e-07 60.8 256 22.7
AT1G48870 Arabidopsis thaliana HOM05D000645 ORTHO05D000494 9.2e-07 60.5 183 25.7
CANSAT25G1395 Cannabis sativa HOM05D002634 ORTHO05D003100 9.2e-07 60.5 138 27.5
Nitab4.5_0007601g0010 Nicotiana tabacum HOM05D000645 ORTHO05D000494 9.2e-07 60.5 297 20.2
PSO017G5762 Papaver somniferum HOM05D000645 ORTHO05D000494 9.2e-07 60.5 198 25.8
Psat4g083960 Pisum sativum HOM05D002634 ORTHO05D003100 9.2e-07 60.5 192 22.4
Prupe.1G428200 Prunus persica HOM05D002634 ORTHO05D003100 9.2e-07 60.5 193 25.4
Sed0007301 Sechium edule HOM05D002634 ORTHO05D003100 9.2e-07 60.5 192 22.9
CARHR280290 Cardamine hirsuta HOM05D002634 ORTHO05D003100 1.2e-06 60.1 195 23.6
Gohir.D11G051400 Gossypium hirsutum HOM05D002634 ORTHO05D003100 1.2e-06 60.1 208 24.5
MBI11_g43875_MAGBIO Magnolia biondii HOM05D000526 ORTHO05D002053 1.2e-06 60.1 210 25.7
Sopen12g030530 Solanum pennellii HOM05D002634 ORTHO05D003100 1.2e-06 60.1 191 22.5
MSTRG.25062 Avicennia marina HOM05D002634 ORTHO05D003100 1.6e-06 59.7 193 25.9
COL.COLO4_11505 Corchorus olitorius HOM05D002634 ORTHO05D003100 1.6e-06 59.7 303 20.5
Eucgr.A02960 Eucalyptus grandis HOM05D000526 ORTHO05D000956 1.6e-06 59.7 310 25.2
FvH4_1g16940 Fragaria vesca HOM05D002634 ORTHO05D003100 1.6e-06 59.7 193 24.9
FAN19G3064 Fragaria x ananassa HOM05D002634 ORTHO05D003100 1.6e-06 59.7 193 24.9
FAN28G0371 Fragaria x ananassa HOM05D002634 ORTHO05D003100 1.6e-06 59.7 193 24.9
Glyma.05G100500 Glycine max HOM05D002634 ORTHO05D003100 1.6e-06 59.7 194 22.2
HanXRQChr05g0133391 Helianthus annuus HOM05D002634 ORTHO05D003100 1.6e-06 59.7 194 24.2
Medtr5g016350 Medicago truncatula HOM05D002634 ORTHO05D003100 1.6e-06 59.7 197 23.9
Os07g0405100 Oryza sativa ssp. japonica HOM05D002634 ORTHO05D003100 1.6e-06 59.7 240 24.6
PSO063G5814 Papaver somniferum HOM05D000645 ORTHO05D000494 1.6e-06 59.7 198 25.8
Peaxi162Scf00160g00029 Petunia axillaris HOM05D002634 ORTHO05D003100 1.6e-06 59.7 191 23.0
Sp2g29340 Schrenkiella parvula HOM05D002634 ORTHO05D003100 1.6e-06 59.7 194 25.3
TPR.G30584 Trifolium pratense HOM05D003913 ORTHO05D004803 1.6e-06 59.7 133 25.6
vmacro19271 Vaccinium macrocarpon HOM05D000464 ORTHO05D006292 1.6e-06 59.7 196 24.0
vmacro23261 Vaccinium macrocarpon HOM05D000464 ORTHO05D006292 1.6e-06 59.7 196 24.0
Aa31LG10G5040 Aethionema arabicum HOM05D000645 ORTHO05D000494 2.0e-06 59.3 189 23.3
AT4G33270 Arabidopsis thaliana HOM05D000526 ORTHO05D000956 2.0e-06 59.3 325 24.6
CANSAT25G0169 Cannabis sativa HOM05D002634 ORTHO05D003100 2.0e-06 59.3 192 22.9
Carub.0001s3801 Capsella rubella HOM05D000645 ORTHO05D000494 2.0e-06 59.3 183 25.7
Ca_30575_v3 Cicer arietinum L. HOM05D003913 ORTHO05D004803 2.0e-06 59.3 159 24.5
FAN26G0639 Fragaria x ananassa HOM05D002634 ORTHO05D003100 2.0e-06 59.3 193 24.9
Glyma.17G165900 Glycine max HOM05D002634 ORTHO05D003100 2.0e-06 59.3 138 26.1
Potri.005G144400 Populus trichocarpa HOM05D002634 ORTHO05D003100 2.0e-06 59.3 192 22.4
SMO118G0254 Selaginella moellendorffii HOM05D002634 ORTHO05D003100 2.0e-06 59.3 192 21.9
TPR.G23895 Trifolium pratense HOM05D002634 ORTHO05D003100 2.0e-06 59.3 138 26.1
unitig_748.g7289 Utricularia gibba HOM05D000645 ORTHO05D000494 2.0e-06 59.3 282 23.0
AT4G33260 Arabidopsis thaliana HOM05D000526 ORTHO05D000956 2.7e-06 58.9 325 24.6
FvH4_2g33540 Fragaria vesca HOM05D002634 ORTHO05D003100 2.7e-06 58.9 193 25.4
FAN24G2212 Fragaria x ananassa HOM05D002634 ORTHO05D003100 2.7e-06 58.9 193 25.4
Potri.008G141400 Populus trichocarpa HOM05D001715 ORTHO05D003849 2.7e-06 58.9 183 25.7
PRCOL_00006201 Prasinoderma coloniale HOM05D011303 ORTHO05D018349 2.7e-06 58.9 252 23.0
Sopen11g001670 Solanum pennellii HOM05D000645 ORTHO05D000494 2.7e-06 58.9 191 25.1
Gohir.A05G102200 Gossypium hirsutum HOM05D001715 ORTHO05D003849 3.5e-06 58.5 183 23.5
HanXRQChr04g0103361 Helianthus annuus HOM05D002634 ORTHO05D003100 3.5e-06 58.5 194 23.7
Lalb_Chr05g0226131 Lupinus albus HOM05D002634 ORTHO05D003100 3.5e-06 58.5 195 22.6
MD15G1075300 Malus domestica HOM05D002634 ORTHO05D003100 3.5e-06 58.5 193 24.9
Medtr5g016370 Medicago truncatula HOM05D002634 ORTHO05D003100 3.5e-06 58.5 193 23.3
MCO05G071 Micromonas commoda HOM05D000526 ORTHO05D000956 3.5e-06 58.5 210 26.7
Pp3c2_10200 Physcomitrium patens HOM05D000526 ORTHO05D000956 3.5e-06 58.5 210 23.8
Sc16g0001440 Simmondsia chinensis HOM05D002634 ORTHO05D003100 3.5e-06 58.5 193 24.9
TPR.G26905 Trifolium pratense HOM05D002634 ORTHO05D003100 3.5e-06 58.5 190 24.2
HPP92_020480 Vanilla planifolia HOM05D002634 ORTHO05D003100 3.5e-06 58.5 138 26.1
AL7G18290 Arabidopsis lyrata HOM05D000526 ORTHO05D000956 4.6e-06 58.2 367 23.4
CAN.G1054.5 Capsicum annuum HOM05D002634 ORTHO05D003100 4.6e-06 58.2 190 23.2
AUR62003945 Chenopodium quinoa HOM05D002634 ORTHO05D003100 4.6e-06 58.2 194 24.2
FAN15G1883 Fragaria x ananassa HOM05D002634 ORTHO05D003100 4.6e-06 58.2 193 23.8
Lalb_Chr16g0388841 Lupinus albus HOM05D002634 ORTHO05D003100 4.6e-06 58.2 195 25.6
Sc02g0007620 Simmondsia chinensis HOM05D002634 ORTHO05D003100 4.6e-06 58.2 192 24.0
BcaB04g20066 Brassica carinata HOM05D002634 ORTHO05D003100 6.0e-06 57.8 194 24.7
AUR62038259 Chenopodium quinoa HOM05D002634 ORTHO05D003100 6.0e-06 57.8 194 24.2
Ca_24733_v3 Cicer arietinum L. HOM05D002634 ORTHO05D003100 6.0e-06 57.8 194 22.7
MBI03_g31840_MAGBIO Magnolia biondii HOM05D001715 ORTHO05D003849 6.0e-06 57.8 183 23.0
Mapoly0007s0003 Marchantia polymorpha HOM05D000526 ORTHO05D000956 6.0e-06 57.8 210 23.8
Mapoly0033s0088 Marchantia polymorpha HOM05D000526 ORTHO05D000956 6.0e-06 57.8 310 22.6
QL02p003120 Quercus lobata HOM05D002634 ORTHO05D003100 6.0e-06 57.8 193 24.4
QL03p022872 Quercus lobata HOM05D002634 ORTHO05D003100 6.0e-06 57.8 193 24.4
RcHm_v2.0_Chr6g0308951 Rosa chinensis HOM05D002634 ORTHO05D003100 6.0e-06 57.8 193 25.4
Solyc12g088630.2 Solanum lycopersicum HOM05D002634 ORTHO05D003100 6.0e-06 57.8 191 23.6
C06p03440 Brassica napus HOM05D000645 ORTHO05D000494 7.8e-06 57.4 178 25.3
CAN.G107.42 Capsicum annuum HOM05D002634 ORTHO05D003100 7.8e-06 57.4 192 21.4
Gohir.D05G101900 Gossypium hirsutum HOM05D001715 ORTHO05D003849 7.8e-06 57.4 183 24.0
Gorai.009G106100 Gossypium raimondii HOM05D001715 ORTHO05D003849 7.8e-06 57.4 183 24.0
HanXRQChr01g0007691 Helianthus annuus HOM05D000002 ORTHO05D006339 7.8e-06 57.4 149 25.5
Psat7g047440 Pisum sativum HOM05D000645 ORTHO05D000494 7.8e-06 57.4 170 26.5
Thecc.08G198300 Theobroma cacao HOM05D003913 ORTHO05D004803 7.8e-06 57.4 196 23.0


User provided reference genes

Program Settings