Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g48842 Chara braunii HOM05D005140 ORTHO05D006288 1.7e-257 892.1 445 100.0
Pp3c10_5020 Physcomitrium patens HOM05D005140 ORTHO05D006288 1.7e-108 397.1 430 52.8
AagrBONN_evm.TU.Sc2ySwM_344.2637 Anthoceros agrestis HOM05D005140 ORTHO05D006288 2.0e-104 383.6 423 49.2
Mapoly0062s0029 Marchantia polymorpha HOM05D005140 ORTHO05D006288 1.3e-103 380.9 425 52.9
Hund14471 Selenicereus undatus HOM05D005140 ORTHO05D006288 4.3e-99 365.9 433 47.6
Ah.12g053860 Amaranthus hybridus HOM05D005140 ORTHO05D006288 5.3e-97 359.0 424 47.6
Gorai.004G191200 Gossypium raimondii HOM05D005140 ORTHO05D006288 5.3e-97 359.0 427 48.0
Atru.chr9.1157 Acer truncatum HOM05D005140 ORTHO05D006288 6.9e-97 358.6 432 48.1
CARHR224350 Cardamine hirsuta HOM05D005140 ORTHO05D006288 6.9e-97 358.6 425 47.1
unitig_699.g19774 Utricularia gibba HOM05D005140 ORTHO05D006288 6.9e-97 358.6 430 49.3
MD00G1132300 Malus domestica HOM05D005140 ORTHO05D006288 2.0e-96 357.1 429 47.6
Carub.0007s2375 Capsella rubella HOM05D005140 ORTHO05D006288 2.6e-96 356.7 436 45.9
Gohir.D08G182300 Gossypium hirsutum HOM05D005140 ORTHO05D006288 4.5e-96 355.9 427 48.0
Thhalv10024864m.g Eutrema salsugineum HOM05D005140 ORTHO05D006288 5.8e-96 355.5 424 46.9
Thecc.03G238100 Theobroma cacao HOM05D005140 ORTHO05D006288 5.8e-96 355.5 430 47.4
MELO3C003340.2 Cucumis melo HOM05D005140 ORTHO05D006288 1.3e-95 354.4 429 48.7
CsaV3_3G049760 Cucumis sativus L. HOM05D005140 ORTHO05D006288 1.3e-95 354.4 429 48.7
Lsat_1_v5_gn_6_94760 Lactuca sativa HOM05D005140 ORTHO05D006288 2.2e-95 353.6 434 47.7
PGR031G2829 Punica granatum HOM05D005140 ORTHO05D006288 2.9e-95 353.2 428 47.7
TAR636G3078 Trochodendron aralioides HOM05D005140 ORTHO05D006288 2.9e-95 353.2 429 46.6
AT4G17620 Arabidopsis thaliana HOM05D005140 ORTHO05D006288 3.8e-95 352.8 424 46.2
Migut.F01520 Erythranthe guttata HOM05D005140 ORTHO05D006288 4.9e-95 352.4 434 46.5
ATR0665G273 Amborella trichopoda HOM05D005140 ORTHO05D006288 6.5e-95 352.1 436 46.6
ClCG09G012630 Citrullus lanatus HOM05D005140 ORTHO05D006288 6.5e-95 352.1 429 48.3
Eucgr.D02138 Eucalyptus grandis HOM05D005140 ORTHO05D006288 5.5e-94 349.0 432 47.2
Cc08_g11170 Coffea canephora HOM05D005140 ORTHO05D006288 9.3e-94 348.2 434 47.0
TWI60G0080 Tripterygium wilfordii HOM05D005140 ORTHO05D006288 9.3e-94 348.2 433 46.2
DCAR_008319 Daucus carota HOM05D005140 ORTHO05D006288 2.1e-93 347.1 427 46.6
RcHm_v2.0_Chr7g0206411 Rosa chinensis HOM05D005140 ORTHO05D006288 2.1e-93 347.1 427 46.1
Ciclev10019303m.g Citrus clementina HOM05D005140 ORTHO05D006288 3.5e-93 346.3 430 46.7
EL10Ac5g12239 Beta vulgaris HOM05D005140 ORTHO05D006288 4.6e-93 345.9 290 59.0
Gohir.A08G162300 Gossypium hirsutum HOM05D005140 ORTHO05D006288 4.6e-93 345.9 290 59.3
Nn6g33739 Nelumbo nucifera HOM05D005140 ORTHO05D006288 1.0e-92 344.7 441 46.7
Potri.001G149900 Populus trichocarpa HOM05D005140 ORTHO05D006288 1.0e-92 344.7 424 46.9
Rhsim07G0119600 Rhododendron simsii HOM05D005140 ORTHO05D006288 1.0e-92 344.7 429 47.8
Sed0013740 Sechium edule HOM05D005140 ORTHO05D006288 1.0e-92 344.7 429 47.1
CiPaw.12G056200 Carya illinoinensis HOM05D005140 ORTHO05D006288 1.3e-92 344.4 434 45.4
Sp7g16510 Schrenkiella parvula HOM05D005140 ORTHO05D006288 1.3e-92 344.4 427 45.0
Sed0020438 Sechium edule HOM05D005140 ORTHO05D006288 1.3e-92 344.4 427 46.4
Duzib068G0986 Durio zibethinus HOM05D005140 ORTHO05D006288 1.8e-92 344.0 315 54.9
Prupe.5G053400 Prunus persica HOM05D005140 ORTHO05D006288 2.3e-92 343.6 427 47.1
QL12p008469 Quercus lobata HOM05D005140 ORTHO05D006288 2.3e-92 343.6 427 47.1
THA.LOC104798349 Tarenaya hassleriana HOM05D005140 ORTHO05D006288 2.3e-92 343.6 434 44.5
FAN04G2093 Fragaria x ananassa HOM05D005140 ORTHO05D006288 3.0e-92 343.2 433 46.0
MSTRG.13768 Avicennia marina HOM05D005140 ORTHO05D006288 3.9e-92 342.8 427 46.8
FvH4_5g20680 Fragaria vesca HOM05D005140 ORTHO05D006288 3.9e-92 342.8 433 45.7
COL.COLO4_06693 Corchorus olitorius HOM05D005140 ORTHO05D006288 5.1e-92 342.4 427 46.4
ECA240G1687 Erigeron canadensis HOM05D005140 ORTHO05D006288 5.1e-92 342.4 425 46.8
FAN08G1378 Fragaria x ananassa HOM05D005140 ORTHO05D006288 5.1e-92 342.4 425 46.4
Manes.01G182900 Manihot esculenta HOM05D005140 ORTHO05D006288 5.1e-92 342.4 425 47.5
Aqoxy3G02576 Aquilegia oxysepala HOM05D005140 ORTHO05D006288 8.7e-92 341.7 444 44.8
FAN13G1317 Fragaria x ananassa HOM05D005140 ORTHO05D006288 8.7e-92 341.7 427 46.4
vmacro23518 Vaccinium macrocarpon HOM05D005140 ORTHO05D006288 1.1e-91 341.3 427 47.1
BcaC06g33554 Brassica carinata HOM05D005140 ORTHO05D006288 1.5e-91 340.9 425 44.5
MD06G1045500 Malus domestica HOM05D005140 ORTHO05D006288 1.9e-91 340.5 440 45.5
Lalb_Chr09g0324091 Lupinus albus HOM05D005140 ORTHO05D006288 2.5e-91 340.1 431 46.2
A03p50570 Brassica napus HOM05D005140 ORTHO05D006288 7.4e-91 338.6 445 44.3
C01p11300 Brassica napus HOM05D005140 ORTHO05D006288 7.4e-91 338.6 429 44.5
BolC7t45397H Brassica oleracea HOM05D005140 ORTHO05D006288 7.4e-91 338.6 370 48.9
BraA03t14147Z Brassica rapa HOM05D005140 ORTHO05D006288 7.4e-91 338.6 344 50.6
CANSAT21G2106 Cannabis sativa HOM05D005140 ORTHO05D006288 7.4e-91 338.6 432 49.8
AUR62007191 Chenopodium quinoa HOM05D005140 ORTHO05D006288 7.4e-91 338.6 302 56.6
Phvul.002G002400 Phaseolus vulgaris HOM05D005140 ORTHO05D006288 7.4e-91 338.6 430 46.3
GSVIVG01013286001 Vitis vinifera HOM05D005140 ORTHO05D006288 9.6e-91 338.2 315 54.6
C07p48890 Brassica napus HOM05D005140 ORTHO05D006288 1.3e-90 337.8 370 48.9
Ca_24617_v3 Cicer arietinum L. HOM05D005140 ORTHO05D006288 1.3e-90 337.8 433 45.7
Glyma.01G204000 Glycine max HOM05D005140 ORTHO05D006288 1.3e-90 337.8 427 45.9
BcaNung03452 Brassica carinata HOM05D005140 ORTHO05D006288 2.1e-90 337.0 430 44.9
CAN.G572.25 Capsicum annuum HOM05D005140 ORTHO05D006288 2.1e-90 337.0 423 46.1
BcaNung00074 Brassica carinata HOM05D005140 ORTHO05D006288 2.8e-90 336.7 432 44.0
BcaNung06713 Brassica carinata HOM05D005140 ORTHO05D006288 2.8e-90 336.7 315 52.7
Solyc08g077750.4 Solanum lycopersicum HOM05D005140 ORTHO05D006288 2.8e-90 336.7 423 46.6
Medtr5g013580 Medicago truncatula HOM05D005140 ORTHO05D006288 3.7e-90 336.3 427 48.7
SGA_v2.0_scaffold20G09272 Striga asiatica HOM05D005140 ORTHO05D006288 3.7e-90 336.3 453 44.2
SMO259G0041 Selaginella moellendorffii HOM05D005140 ORTHO05D006288 4.8e-90 335.9 290 53.8
Sopen08g026270 Solanum pennellii HOM05D005140 ORTHO05D006288 4.8e-90 335.9 423 46.6
Lj2g0026795 Lotus japonicus HOM05D005140 ORTHO05D006288 6.2e-90 335.5 426 45.5
PSO063G3549 Papaver somniferum HOM05D005140 ORTHO05D006288 8.2e-90 335.1 402 47.5
PSO782G2508 Papaver somniferum HOM05D005140 ORTHO05D006288 8.2e-90 335.1 402 47.5
Psat2g175480 Pisum sativum HOM05D005140 ORTHO05D006288 8.2e-90 335.1 433 45.7
Peaxi162Scf00301g01111 Petunia axillaris HOM05D005140 ORTHO05D006288 1.1e-89 334.7 430 46.3
MBI04_g38568_MAGBIO Magnolia biondii HOM05D005140 ORTHO05D006288 3.1e-89 333.2 315 53.0
Haze_08349 Corylus avellana HOM05D005140 ORTHO05D006288 4.0e-89 332.8 441 44.9
TPR.G22969 Trifolium pratense HOM05D005140 ORTHO05D006288 4.0e-89 332.8 437 44.4
arahy.Tifrunner.gnm1.ann1.FH98R9 Arachis hypogaea HOM05D005140 ORTHO05D006288 6.9e-89 332.0 427 47.3
arahy.Tifrunner.gnm1.ann1.W7TPG2 Arachis hypogaea HOM05D005140 ORTHO05D006288 6.9e-89 332.0 427 47.3
AUR62018812 Chenopodium quinoa HOM05D005140 ORTHO05D006288 1.2e-88 331.3 276 59.1
HanXRQChr03g0089631 Helianthus annuus HOM05D005140 ORTHO05D006288 1.2e-88 331.3 290 56.6
Dinv28888 Davidia involucrata HOM05D005140 ORTHO05D006288 1.5e-88 330.9 429 45.7
Glyma.11G039000 Glycine max HOM05D005140 ORTHO05D006288 1.5e-88 330.9 427 45.4
Aa31LG6G380 Aethionema arabicum HOM05D005140 ORTHO05D006288 5.8e-88 328.9 441 43.5
Actinidia31490 Actinidia chinensis HOM05D005140 ORTHO05D006288 1.3e-87 327.8 473 43.1
HPP92_020526 Vanilla planifolia HOM05D005140 ORTHO05D006288 1.7e-87 327.4 428 44.2
Dinv25152 Davidia involucrata HOM05D005140 ORTHO05D006288 6.5e-87 325.5 426 45.5
Sabra01G0119900 Salix brachista HOM05D005140 ORTHO05D006288 6.5e-87 325.5 470 43.2
A01p09690 Brassica napus HOM05D005140 ORTHO05D006288 6.1e-85 318.9 433 45.7
Nn1g00730 Nelumbo nucifera HOM05D005140 ORTHO05D006288 7.9e-85 318.5 327 52.3
SGA_v2.0_scaffold6G03141 Striga asiatica HOM05D005140 ORTHO05D006288 7.9e-85 318.5 317 52.7
BraA01t00912Z Brassica rapa HOM05D005140 ORTHO05D006288 1.8e-84 317.4 430 43.0
vmacro14121 Vaccinium macrocarpon HOM05D005140 ORTHO05D006288 1.1e-83 314.7 427 45.0
BcaC09g51625 Brassica carinata HOM05D005140 ORTHO05D006288 7.4e-83 312.0 434 41.9
VMungo0239G0001 Vigna mungo HOM05D005140 ORTHO05D006288 9.7e-83 311.6 287 55.4
HPP92_028085 Vanilla planifolia HOM05D005140 ORTHO05D006288 1.4e-81 307.8 278 54.3
FAN18G3556 Fragaria x ananassa HOM05D005140 ORTHO05D006288 2.4e-81 307.0 430 43.3
CDE04G2928 Ceratophyllum demersum HOM05D005140 ORTHO05D006288 9.4e-78 295.0 427 41.7
HPP92_022002 Vanilla planifolia HOM05D005140 ORTHO05D006288 2.7e-77 293.5 431 40.4
THA.LOC104814458 Tarenaya hassleriana HOM05D005140 ORTHO05D006288 3.6e-77 293.1 315 47.0
Zm00001eb287280 Zea mays HOM05D005140 ORTHO05D006288 3.0e-76 290.0 264 54.2
Nitab4.5_0012059g0010 Nicotiana tabacum HOM05D005140 ORTHO05D006288 2.2e-74 283.9 454 41.2
Nitab4.5_0004689g0020 Nicotiana tabacum HOM05D005140 ORTHO05D006288 4.1e-73 279.6 439 41.5
Lj9A525T29 Lonicera japonica HOM05D005140 ORTHO05D006288 3.4e-72 276.6 410 42.0
MBI04_g46822_MAGBIO Magnolia biondii HOM05D005140 ORTHO05D006288 3.4e-72 276.6 383 42.8
Aa31LG9G15140 Aethionema arabicum HOM05D005140 ORTHO05D006288 5.0e-71 272.7 423 39.7
Os05g0392100 Oryza sativa ssp. japonica HOM05D005140 ORTHO05D006288 2.3e-68 263.8 374 44.4
Sc01g0007900 Simmondsia chinensis HOM05D005140 ORTHO05D006288 3.9e-60 236.5 360 41.4
Lj2C253G13 Lonicera japonica HOM05D005140 ORTHO05D006288 1.1e-59 235.0 430 36.5
Hma1.2p1_1672F.1_g296780 Hydrangea macrophylla HOM05D005140 ORTHO05D006288 7.7e-56 222.2 245 49.8
GSVIVG01013283001 Vitis vinifera HOM05D005140 ORTHO05D006288 2.5e-54 217.2 315 41.3
CDE12G0612 Ceratophyllum demersum HOM05D005140 ORTHO05D006288 5.5e-54 216.1 207 52.7
BolC1t01096H Brassica oleracea HOM05D005140 ORTHO05D006288 7.2e-54 215.7 191 56.0
Cpa.g.sc98.58 Carica papaya HOM05D005140 ORTHO05D006288 3.7e-50 203.4 264 43.9
SHI07711 Sapria himalayana HOM05D005140 ORTHO05D006288 1.2e-48 198.4 206 49.5
Oeu017029.1 Olea europaea HOM05D005140 ORTHO05D006288 3.5e-48 196.8 162 58.0
Peaxi162Scf00715g00010 Petunia axillaris HOM05D005140 ORTHO05D006288 4.0e-36 156.8 242 40.5
MCO13G373 Micromonas commoda HOM05D005140 ORTHO05D006288 1.2e-35 155.2 297 33.0
Psat1g146680 Pisum sativum HOM05D005140 ORTHO05D006288 3.5e-24 117.1 75 68.0
Oeu017031.1 Olea europaea HOM05D005140 ORTHO05D006288 1.6e-21 108.2 99 55.6
Cre07.g338400 Chlamydomonas reinhardtii HOM05D005140 ORTHO05D006288 8.9e-20 102.4 277 29.6
Cfa024662 Carpinus fangiana HOM05D005140 ORTHO05D006288 7.5e-19 99.4 219 36.1
SEGI_19334 Sequoiadendron giganteum HOM05D005140 ORTHO05D000001 3.2e-17 94.0 71 63.4
Oeu062963.3 Olea europaea HOM05D005140 ORTHO05D006288 6.6e-15 86.3 90 51.1
MD10G1199900 Malus domestica HOM05D005140 ORTHO05D006288 2.1e-13 81.3 67 58.2
QL12p008508 Quercus lobata HOM05D005140 ORTHO05D006288 2.6e-11 74.3 188 34.0
Thecc.03G238400 Theobroma cacao HOM05D005140 ORTHO05D006288 7.6e-11 72.8 112 35.7
DCAR_016064 Daucus carota HOM05D005140 ORTHO05D006288 5.1e-07 60.1 45 60.0
GSVIVG01001794001 Vitis vinifera HOM05D005140 ORTHO05D006288 6.6e-07 59.7 74 44.6


User provided reference genes

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