Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g4857 Chara braunii HOM05D006305 ORTHO05D007984 1.6e-239 832.4 449 100.0
Pp3c6_29610 Physcomitrium patens HOM05D006305 ORTHO05D007984 1.8e-97 360.5 252 67.9
Zm00001eb043410 Zea mays HOM05D006305 ORTHO05D007984 1.7e-95 354.0 266 65.8
ClCG08G002270 Citrullus lanatus HOM05D006305 ORTHO05D007984 7.2e-94 348.6 302 60.9
Medtr1g082570 Medicago truncatula HOM05D006305 ORTHO05D007984 1.8e-92 344.0 287 62.0
ATR0620G066 Amborella trichopoda HOM05D006305 ORTHO05D007984 8.8e-92 341.7 251 65.7
HPP92_015091 Vanilla planifolia HOM05D006305 ORTHO05D007984 1.1e-91 341.3 262 65.3
CANSAT54G0217 Cannabis sativa HOM05D006305 ORTHO05D007984 2.6e-91 340.1 266 63.9
Ca_10097_v3 Cicer arietinum L. HOM05D006305 ORTHO05D007984 2.6e-91 340.1 260 63.8
FAN05G5097 Fragaria x ananassa HOM05D006305 ORTHO05D007984 7.4e-91 338.6 276 62.3
Glyma.10G156300 Glycine max HOM05D006305 ORTHO05D007984 7.4e-91 338.6 273 63.4
Thecc.05G307300 Theobroma cacao HOM05D006305 ORTHO05D007984 7.4e-91 338.6 286 62.2
CDE11G1040 Ceratophyllum demersum HOM05D006305 ORTHO05D007984 9.7e-91 338.2 274 63.5
CAN.G479.41 Capsicum annuum HOM05D006305 ORTHO05D007984 1.7e-90 337.4 267 64.0
FAN05G0068 Fragaria x ananassa HOM05D006305 ORTHO05D007984 1.7e-90 337.4 276 62.0
Psat0ss6702g0320 Pisum sativum HOM05D006305 ORTHO05D007984 1.7e-90 337.4 285 60.7
Cc02_g33730 Coffea canephora HOM05D006305 ORTHO05D007984 2.2e-90 337.0 264 64.0
BolC5t34858H Brassica oleracea HOM05D006305 ORTHO05D007984 3.7e-90 336.3 264 62.1
Migut.F01514 Erythranthe guttata HOM05D006305 ORTHO05D007984 3.7e-90 336.3 272 61.8
FAN14G0751 Fragaria x ananassa HOM05D006305 ORTHO05D007984 3.7e-90 336.3 276 62.0
FAN14G5210 Fragaria x ananassa HOM05D006305 ORTHO05D007984 3.7e-90 336.3 276 62.0
SalBow6G6985 Salvia bowleyana HOM05D006305 ORTHO05D007984 3.7e-90 336.3 290 60.0
EL10Ac4g09328 Beta vulgaris HOM05D006305 ORTHO05D007984 4.8e-90 335.9 287 59.6
BcaC05g30009 Brassica carinata HOM05D006305 ORTHO05D007984 4.8e-90 335.9 280 59.6
C05p61980 Brassica napus HOM05D006305 ORTHO05D007984 4.8e-90 335.9 280 59.6
Mapoly0128s0010 Marchantia polymorpha HOM05D006305 ORTHO05D007984 6.3e-90 335.5 293 58.7
Sp3g04060 Schrenkiella parvula HOM05D006305 ORTHO05D007984 1.1e-89 334.7 291 58.8
SMO146G0211 Selaginella moellendorffii HOM05D006305 ORTHO05D007984 1.1e-89 334.7 207 74.4
unitig_746.g26625 Utricularia gibba HOM05D006305 ORTHO05D007984 1.4e-89 334.3 276 60.9
Manes.09G164300 Manihot esculenta HOM05D006305 ORTHO05D007984 2.4e-89 333.6 268 61.6
FvH4_6g05460 Fragaria vesca HOM05D006305 ORTHO05D007984 3.1e-89 333.2 276 61.6
TWI56G0624 Tripterygium wilfordii HOM05D006305 ORTHO05D007984 3.1e-89 333.2 298 59.7
QL03p004578 Quercus lobata HOM05D006305 ORTHO05D007984 4.1e-89 332.8 299 60.2
Dinv23970 Davidia involucrata HOM05D006305 ORTHO05D007984 9.1e-89 331.6 284 60.2
Lj9A683T26 Lonicera japonica HOM05D006305 ORTHO05D007984 9.1e-89 331.6 279 60.9
FAN02G0061 Fragaria x ananassa HOM05D006305 ORTHO05D007984 1.2e-88 331.3 251 64.5
Atru.chr2.472 Acer truncatum HOM05D006305 ORTHO05D007984 1.6e-88 330.9 258 62.8
Hma1.2p1_0666F.1_g199520 Hydrangea macrophylla HOM05D006305 ORTHO05D007984 2.6e-88 330.1 274 61.3
RcHm_v2.0_Chr3g0454231 Rosa chinensis HOM05D006305 ORTHO05D007984 2.6e-88 330.1 277 60.6
GSVIVG01000016001 Vitis vinifera HOM05D006305 ORTHO05D007984 4.5e-88 329.3 284 61.3
Aqoxy5G04250 Aquilegia oxysepala HOM05D006305 ORTHO05D007984 5.9e-88 328.9 268 61.2
Gorai.013G204500 Gossypium raimondii HOM05D006305 ORTHO05D007984 5.9e-88 328.9 277 61.0
Ciclev10001229m.g Citrus clementina HOM05D006305 ORTHO05D007984 7.7e-88 328.6 273 62.6
Phvul.007G181700 Phaseolus vulgaris HOM05D006305 ORTHO05D007984 1.0e-87 328.2 293 60.1
MELO3C025022.2 Cucumis melo HOM05D006305 ORTHO05D007984 1.3e-87 327.8 256 65.2
Solyc03g115580.4 Solanum lycopersicum HOM05D006305 ORTHO05D007984 1.3e-87 327.8 266 62.4
Thhalv10020823m.g Eutrema salsugineum HOM05D006305 ORTHO05D007984 2.2e-87 327.0 293 56.7
VMungo0720G1654 Vigna mungo HOM05D006305 ORTHO05D007984 2.2e-87 327.0 291 59.1
Os10g0518900 Oryza sativa ssp. japonica HOM05D006305 ORTHO05D007984 2.9e-87 326.6 237 67.1
Gohir.D13G179200 Gossypium hirsutum HOM05D006305 ORTHO05D007984 3.8e-87 326.2 275 60.7
Lsat_1_v5_gn_2_67520 Lactuca sativa HOM05D006305 ORTHO05D007984 5.0e-87 325.9 294 57.5
BcaC05g30168 Brassica carinata HOM05D006305 ORTHO05D007984 6.5e-87 325.5 287 56.8
Carub.0003s0446 Capsella rubella HOM05D006305 ORTHO05D007984 6.5e-87 325.5 283 58.7
PGSC0003DMG400024658 Solanum tuberosum HOM05D006305 ORTHO05D007984 6.5e-87 325.5 267 61.4
A05p42370 Brassica napus HOM05D006305 ORTHO05D007984 8.5e-87 325.1 283 58.0
BraA05t23013Z Brassica rapa HOM05D006305 ORTHO05D007984 8.5e-87 325.1 283 58.0
SGA_v2.0_scaffold34G13953 Striga asiatica HOM05D006305 ORTHO05D007984 8.5e-87 325.1 306 56.5
CiPaw.07G015100 Carya illinoinensis HOM05D006305 ORTHO05D007984 1.9e-86 323.9 280 59.6
Lalb_Chr02g0148341 Lupinus albus HOM05D006305 ORTHO05D007984 2.5e-86 323.6 284 60.2
CsaV3_6G002610 Cucumis sativus L. HOM05D006305 ORTHO05D007984 4.2e-86 322.8 259 63.3
PGR031G3204 Punica granatum HOM05D006305 ORTHO05D007984 7.2e-86 322.0 266 61.7
AL3G15630 Arabidopsis lyrata HOM05D006305 ORTHO05D007984 9.4e-86 321.6 289 56.4
Lj5g0026498 Lotus japonicus HOM05D006305 ORTHO05D007984 9.4e-86 321.6 274 59.9
MD04G1208500 Malus domestica HOM05D006305 ORTHO05D007984 9.4e-86 321.6 303 57.8
Eucgr.H04470 Eucalyptus grandis HOM05D006305 ORTHO05D007984 1.2e-85 321.2 305 56.4
Hund21683 Selenicereus undatus HOM05D006305 ORTHO05D007984 1.6e-85 320.9 243 65.0
CSS0018445 Camellia sinensis var. sinensis HOM05D006305 ORTHO05D007984 2.7e-85 320.1 273 59.7
Ah.06g189130 Amaranthus hybridus HOM05D006305 ORTHO05D007984 6.1e-85 318.9 297 56.2
CSS0021232 Camellia sinensis var. sinensis HOM05D006305 ORTHO05D007984 6.1e-85 318.9 283 58.0
Nitab4.5_0002756g0070 Nicotiana tabacum HOM05D006305 ORTHO05D007984 6.1e-85 318.9 285 58.2
Rhsim05G0143900 Rhododendron simsii HOM05D006305 ORTHO05D007984 8.0e-85 318.5 284 58.5
arahy.Tifrunner.gnm1.ann1.84BFE2 Arachis hypogaea HOM05D006305 ORTHO05D007984 1.8e-84 317.4 277 59.6
COL.COLO4_19840 Corchorus olitorius HOM05D006305 ORTHO05D007984 1.8e-84 317.4 232 65.5
HanXRQChr15g0472081 Helianthus annuus HOM05D006305 ORTHO05D007984 1.8e-84 317.4 254 62.2
TAR636G3548 Trochodendron aralioides HOM05D006305 ORTHO05D007984 3.0e-84 316.6 289 57.8
DCAR_029432 Daucus carota HOM05D006305 ORTHO05D007984 4.0e-84 316.2 276 58.0
Potri.005G036700 Populus trichocarpa HOM05D006305 ORTHO05D007984 6.8e-84 315.5 298 57.0
ECA238G3439 Erigeron canadensis HOM05D006305 ORTHO05D007984 1.2e-83 314.7 266 60.5
Gohir.A13G173500 Gossypium hirsutum HOM05D006305 ORTHO05D007984 2.0e-83 313.9 278 58.6
Sopen03g034570 Solanum pennellii HOM05D006305 ORTHO05D007984 2.0e-83 313.9 267 59.9
MSTRG.306 Avicennia marina HOM05D006305 ORTHO05D007984 4.4e-83 312.8 268 59.7
AUR62005086 Chenopodium quinoa HOM05D006305 ORTHO05D007984 4.4e-83 312.8 239 64.0
AUR62000888 Chenopodium quinoa HOM05D006305 ORTHO05D007984 5.7e-83 312.4 239 64.0
Peaxi162Scf00274g00026 Petunia axillaris HOM05D006305 ORTHO05D007984 1.7e-82 310.8 315 53.3
arahy.Tifrunner.gnm1.ann1.39Z7HW Arachis hypogaea HOM05D006305 ORTHO05D007984 2.8e-82 310.1 283 58.3
Sabra05G0037100 Salix brachista HOM05D006305 ORTHO05D007984 4.8e-82 309.3 317 53.3
Sed0018566 Sechium edule HOM05D006305 ORTHO05D007984 1.4e-81 307.8 253 60.1
MBI04_g21739_MAGBIO Magnolia biondii HOM05D006305 ORTHO05D007984 5.3e-81 305.8 239 64.4
BcaC05g30019 Brassica carinata HOM05D006305 ORTHO05D007984 9.1e-81 305.1 280 56.1
THA.LOC104820089 Tarenaya hassleriana HOM05D006305 ORTHO05D007984 9.1e-81 305.1 279 58.1
Prupe.6G329400 Prunus persica HOM05D006305 ORTHO05D007984 2.7e-80 303.5 207 70.5
Aa31LG5G15590 Aethionema arabicum HOM05D006305 ORTHO05D007984 4.5e-80 302.8 314 51.9
vmacro19639 Vaccinium macrocarpon HOM05D006305 ORTHO05D007984 4.5e-80 302.8 206 70.9
Nn3g18889 Nelumbo nucifera HOM05D006305 ORTHO05D007984 1.7e-79 300.8 251 61.0
PSO782G4398 Papaver somniferum HOM05D006305 ORTHO05D007984 2.5e-78 297.0 246 59.8
Cfa006552 Carpinus fangiana HOM05D006305 ORTHO05D007984 4.8e-74 282.7 265 56.2
AagrBONN_evm.TU.Sc2ySwM_369.531 Anthoceros agrestis HOM05D006305 ORTHO05D007984 7.2e-70 268.9 316 47.5
AT3G05210 Arabidopsis thaliana HOM05D006305 ORTHO05D007984 1.2e-69 268.1 232 58.2
PSO063G7033 Papaver somniferum HOM05D006305 ORTHO05D007984 8.0e-69 265.4 261 54.4
Cre03.g196651 Chlamydomonas reinhardtii HOM05D006305 ORTHO05D007984 8.9e-68 261.9 250 53.6
TPR.G22794 Trifolium pratense HOM05D006305 ORTHO05D007984 7.3e-62 242.3 185 66.5
Sc16g0008400 Simmondsia chinensis HOM05D006305 ORTHO05D007984 4.0e-60 236.5 203 59.6
Ciclev10002028m.g Citrus clementina HOM05D006305 ORTHO05D007984 5.8e-59 232.6 198 62.1
Haze_04230 Corylus avellana HOM05D006305 ORTHO05D007984 3.7e-58 229.9 318 43.7
Hma1.2p1_0666F.1_g199530 Hydrangea macrophylla HOM05D006305 ORTHO05D007984 4.9e-58 229.6 168 70.2
Ciclev10003828m.g Citrus clementina HOM05D006305 ORTHO05D007984 1.4e-57 228.0 253 49.8
MBI04_g44620_MAGBIO Magnolia biondii HOM05D006305 ORTHO05D007984 1.2e-56 224.9 146 74.7
CARHR079550 Cardamine hirsuta HOM05D006305 ORTHO05D007984 1.0e-55 221.9 170 64.1
Cpa.g.sc1183.2 Carica papaya HOM05D006305 ORTHO05D007984 9.2e-49 198.7 280 45.7
Nitab4.5_0001211g0080 Nicotiana tabacum HOM05D006305 ORTHO05D007984 7.3e-46 189.1 280 41.1
Duzib106G1918 Durio zibethinus HOM05D006305 ORTHO05D007984 9.5e-46 188.7 134 70.1
PRCOL_00003423 Prasinoderma coloniale HOM05D006305 ORTHO05D007984 2.3e-44 184.1 201 48.8
Cfa026476 Carpinus fangiana HOM05D006305 ORTHO05D007984 1.5e-38 164.9 238 37.4
Ciclev10003373m.g Citrus clementina HOM05D006305 ORTHO05D007984 3.1e-36 157.1 233 42.9
MCO01G606 Micromonas commoda HOM05D006305 ORTHO05D007984 2.9e-34 150.6 198 39.9
Ciclev10003460m.g Citrus clementina HOM05D006305 ORTHO05D007984 1.3e-26 125.2 219 37.9
TPR.G7405 Trifolium pratense HOM05D006305 ORTHO05D007984 3.2e-17 94.0 113 44.2
SalBow6G3462 Salvia bowleyana HOM05D006305 ORTHO05D007984 5.4e-17 93.2 113 43.4
Glyma.20G232002 Glycine max HOM05D006305 ORTHO05D007984 3.9e-15 87.0 70 64.3
Pp3c16_18520 Physcomitrium patens HOM05D006305 ORTHO05D007984 2.8e-13 80.9 110 40.9
MELO3C033326.2 Cucumis melo HOM05D006305 ORTHO05D168382 1.0e-07 62.4 34 70.6


User provided reference genes

Program Settings