Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g46861 Chara braunii HOM05D005526 ORTHO05D006802 4.4e-237 824.3 444 100.0
Aqoxy7G02084 Aquilegia oxysepala HOM05D005526 ORTHO05D006802 8.1e-90 335.1 445 47.0
Nn2g11952 Nelumbo nucifera HOM05D005526 ORTHO05D006802 8.1e-90 335.1 451 47.0
SEGI_35764 Sequoiadendron giganteum HOM05D005526 ORTHO05D006802 8.1e-90 335.1 461 46.9
Cfa002011 Carpinus fangiana HOM05D005526 ORTHO05D006802 2.4e-89 333.6 418 47.1
PSO170G3249 Papaver somniferum HOM05D005526 ORTHO05D006802 3.1e-89 333.2 416 49.3
CiPaw.01G244400 Carya illinoinensis HOM05D005526 ORTHO05D006802 6.9e-89 332.0 411 47.4
Glyma.13G363400 Glycine max HOM05D005526 ORTHO05D006802 1.5e-88 330.9 395 49.4
Lj3g0017842 Lotus japonicus HOM05D005526 ORTHO05D006802 2.0e-88 330.5 434 47.5
Glyma.15G010400 Glycine max HOM05D005526 ORTHO05D006802 4.5e-88 329.3 395 49.1
TAR383G0281 Trochodendron aralioides HOM05D005526 ORTHO05D006802 4.5e-88 329.3 422 46.4
arahy.Tifrunner.gnm1.ann1.FYL3MV Arachis hypogaea HOM05D005526 ORTHO05D006802 5.8e-88 328.9 421 47.5
CANSAT56G0953 Cannabis sativa HOM05D005526 ORTHO05D006802 7.6e-88 328.6 426 49.1
Hund06580 Selenicereus undatus HOM05D005526 ORTHO05D006802 7.6e-88 328.6 435 47.8
Thecc.06G073100 Theobroma cacao HOM05D005526 ORTHO05D006802 1.0e-87 328.2 415 47.2
Atru.chr1.3093 Acer truncatum HOM05D005526 ORTHO05D006802 1.3e-87 327.8 437 46.9
Duzib235G1092 Durio zibethinus HOM05D005526 ORTHO05D006802 1.3e-87 327.8 419 47.5
Gohir.A06G112600 Gossypium hirsutum HOM05D005526 ORTHO05D006802 2.2e-87 327.0 421 48.0
Ciclev10025661m.g Citrus clementina HOM05D005526 ORTHO05D006802 2.9e-87 326.6 409 47.4
Gorai.010G134800 Gossypium raimondii HOM05D005526 ORTHO05D006802 6.5e-87 325.5 422 47.4
Actinidia08810 Actinidia chinensis HOM05D005526 ORTHO05D006802 8.4e-87 325.1 382 48.4
Dinv38097 Davidia involucrata HOM05D005526 ORTHO05D006802 8.4e-87 325.1 422 45.7
Gohir.D06G117200 Gossypium hirsutum HOM05D005526 ORTHO05D006802 8.4e-87 325.1 422 47.4
Sc10g0005720 Simmondsia chinensis HOM05D005526 ORTHO05D006802 1.1e-86 324.7 444 46.2
AT1G80210 Arabidopsis thaliana HOM05D005526 ORTHO05D006802 1.9e-86 323.9 382 49.7
Pp3c27_4740 Physcomitrium patens HOM05D005526 ORTHO05D006802 1.9e-86 323.9 418 50.5
THA.LOC104812497 Tarenaya hassleriana HOM05D005526 ORTHO05D006802 1.9e-86 323.9 435 47.4
TWI75G1755 Tripterygium wilfordii HOM05D005526 ORTHO05D006802 2.5e-86 323.6 416 46.2
TWI18G0833 Tripterygium wilfordii HOM05D005526 ORTHO05D006802 4.2e-86 322.8 417 47.2
Cpa.g.sc336.8 Carica papaya HOM05D005526 ORTHO05D006802 5.5e-86 322.4 424 46.7
Manes.04G116500 Manihot esculenta HOM05D005526 ORTHO05D006802 9.3e-86 321.6 447 44.7
Medtr2g103110 Medicago truncatula HOM05D005526 ORTHO05D006802 9.3e-86 321.6 456 43.6
Migut.D01055 Erythranthe guttata HOM05D005526 ORTHO05D006802 1.2e-85 321.2 450 45.1
CsaV3_4G001390 Cucumis sativus L. HOM05D005526 ORTHO05D006802 1.6e-85 320.9 423 47.0
Potri.001G172800 Populus trichocarpa HOM05D005526 ORTHO05D006802 2.1e-85 320.5 428 47.7
AT3G06820 Arabidopsis thaliana HOM05D005526 ORTHO05D006802 3.5e-85 319.7 422 48.1
CSS0037293 Camellia sinensis var. sinensis HOM05D005526 ORTHO05D006802 4.6e-85 319.3 413 45.8
AUR62016379 Chenopodium quinoa HOM05D005526 ORTHO05D006802 4.6e-85 319.3 434 46.5
Thhalv10018648m.g Eutrema salsugineum HOM05D005526 ORTHO05D006802 6.0e-85 318.9 427 46.8
CARHR074270 Cardamine hirsuta HOM05D005526 ORTHO05D006802 1.3e-84 317.8 421 48.2
Sp5g35600 Schrenkiella parvula HOM05D005526 ORTHO05D006802 1.3e-84 317.8 427 48.0
Prupe.3G079900 Prunus persica HOM05D005526 ORTHO05D006802 2.3e-84 317.0 406 47.8
Phvul.005G174900 Phaseolus vulgaris HOM05D005526 ORTHO05D006802 3.0e-84 316.6 436 46.1
Ca_01085_v3 Cicer arietinum L. HOM05D005526 ORTHO05D006802 5.1e-84 315.8 440 45.2
MSTRG.9436 Avicennia marina HOM05D005526 ORTHO05D006802 6.7e-84 315.5 414 46.6
FvH4_6g30340 Fragaria vesca HOM05D005526 ORTHO05D006802 6.7e-84 315.5 423 45.9
FAN02G2127 Fragaria x ananassa HOM05D005526 ORTHO05D006802 6.7e-84 315.5 423 45.6
MBI01_g11875_MAGBIO Magnolia biondii HOM05D005526 ORTHO05D006802 1.9e-83 313.9 445 45.4
A07p26570 Brassica napus HOM05D005526 ORTHO05D006802 7.4e-83 312.0 435 47.4
SalBow2G2365 Salvia bowleyana HOM05D005526 ORTHO05D006802 9.6e-83 311.6 444 43.2
BcaC08g45297 Brassica carinata HOM05D005526 ORTHO05D006802 1.6e-82 310.8 441 46.5
C06p28990 Brassica napus HOM05D005526 ORTHO05D006802 3.7e-82 309.7 442 46.4
MD09G1221000 Malus domestica HOM05D005526 ORTHO05D006802 3.7e-82 309.7 407 46.7
Mapoly0053s0043 Marchantia polymorpha HOM05D005526 ORTHO05D006802 6.2e-82 308.9 438 46.6
Sed0002477 Sechium edule HOM05D005526 ORTHO05D006802 6.2e-82 308.9 429 45.2
PGR031G1627 Punica granatum HOM05D005526 ORTHO05D006802 8.2e-82 308.5 431 46.6
Eucgr.J03045 Eucalyptus grandis HOM05D005526 ORTHO05D006802 2.4e-81 307.0 424 46.5
BolC6t38065H Brassica oleracea HOM05D005526 ORTHO05D006802 3.1e-81 306.6 444 46.2
BcaB02g07290 Brassica carinata HOM05D005526 ORTHO05D006802 4.0e-81 306.2 441 44.9
Dinv30571 Davidia involucrata HOM05D005526 ORTHO05D006802 5.3e-81 305.8 368 47.8
ECA234G2940 Erigeron canadensis HOM05D005526 ORTHO05D006802 5.3e-81 305.8 416 44.0
SGA_v2.0_scaffold16G07615 Striga asiatica HOM05D005526 ORTHO05D006802 2.0e-80 303.9 424 45.0
Solyc06g067990.3 Solanum lycopersicum HOM05D005526 ORTHO05D006802 3.4e-80 303.1 441 45.1
DCAR_025483 Daucus carota HOM05D005526 ORTHO05D006802 6.5e-79 298.9 432 44.2
VMungo1080G0636 Vigna mungo HOM05D005526 ORTHO05D006802 1.1e-78 298.1 458 42.8
EL10Ac9g21940 Beta vulgaris HOM05D005526 ORTHO05D006802 2.1e-77 293.9 435 44.6
Os05g0542600 Oryza sativa ssp. japonica HOM05D005526 ORTHO05D006802 3.0e-76 290.0 432 42.4
CDE02G1452 Ceratophyllum demersum HOM05D005526 ORTHO05D006802 6.3e-74 282.3 432 43.3
Peaxi162Scf00207g00731 Petunia axillaris HOM05D005526 ORTHO05D006802 4.1e-73 279.6 430 41.9
QL05p027824 Quercus lobata HOM05D005526 ORTHO05D006802 4.1e-73 279.6 525 39.4
Zm00001eb294490 Zea mays HOM05D005526 ORTHO05D006802 1.7e-71 274.2 438 41.6
BraA07t30300Z Brassica rapa HOM05D005526 ORTHO05D006802 3.8e-71 273.1 421 43.9
MD17G1204400 Malus domestica HOM05D005526 ORTHO05D006802 8.5e-71 271.9 504 38.3
CiPaw.02G154800 Carya illinoinensis HOM05D005526 ORTHO05D006802 1.1e-70 271.6 334 49.1
Rhsim12G0193000 Rhododendron simsii HOM05D005526 ORTHO05D006802 6.7e-68 262.3 521 36.7
vmacro16915 Vaccinium macrocarpon HOM05D005526 ORTHO05D006802 1.7e-66 257.7 537 35.4
Aa31LG4G500 Aethionema arabicum HOM05D005526 ORTHO05D006802 2.2e-66 257.3 422 42.9
arahy.Tifrunner.gnm1.ann1.IMA97E Arachis hypogaea HOM05D005526 ORTHO05D006802 4.1e-65 253.1 442 40.3
Nitab4.5_0013710g0010 Nicotiana tabacum HOM05D005526 ORTHO05D006802 6.9e-65 252.3 441 42.2
Nitab4.5_0000620g0060 Nicotiana tabacum HOM05D005526 ORTHO05D006802 1.0e-63 248.4 417 40.8
unitig_899.g14780 Utricularia gibba HOM05D005526 ORTHO05D006802 5.0e-63 246.1 422 40.5
FAN09G0405 Fragaria x ananassa HOM05D005526 ORTHO05D006802 2.5e-62 243.8 421 40.1
AUR62011560 Chenopodium quinoa HOM05D005526 ORTHO05D006802 6.7e-60 235.7 435 39.8
Ah.01g020810 Amaranthus hybridus HOM05D005526 ORTHO05D006802 7.4e-59 232.3 440 38.0
Oeu052283.1 Olea europaea HOM05D005526 ORTHO05D006802 6.3e-58 229.2 445 38.0
ClCG07G012810 Citrullus lanatus HOM05D005526 ORTHO05D006802 1.1e-57 228.4 431 39.2
Lsat_1_v5_gn_5_132520 Lactuca sativa HOM05D005526 ORTHO05D006802 1.4e-57 228.0 410 38.8
CDE01G0292 Ceratophyllum demersum HOM05D005526 ORTHO05D006802 3.1e-57 226.9 427 37.7
TPR.G37284 Trifolium pratense HOM05D005526 ORTHO05D006802 7.0e-57 225.7 329 40.7
GSVIVG01017251001 Vitis vinifera HOM05D005526 ORTHO05D006802 1.0e-55 221.9 337 42.7
Lalb_Chr14g0373681 Lupinus albus HOM05D005526 ORTHO05D006802 1.5e-54 218.0 363 40.8
Psat5g300440 Pisum sativum HOM05D005526 ORTHO05D006802 2.5e-54 217.2 363 41.6
CAN.G395.46 Capsicum annuum HOM05D005526 ORTHO05D006802 3.6e-53 213.4 360 41.9
AL3G17940 Arabidopsis lyrata HOM05D005526 ORTHO05D006802 4.7e-53 213.0 339 41.6
MELO3C017901.2 Cucumis melo HOM05D005526 ORTHO05D006802 6.1e-53 212.6 344 41.9
HanXRQChr10g0303071 Helianthus annuus HOM05D005526 ORTHO05D006802 8.0e-53 212.2 366 39.9
Carub.0002s2731 Capsella rubella HOM05D005526 ORTHO05D006802 4.0e-52 209.9 346 41.0
Sopen06g025270 Solanum pennellii HOM05D005526 ORTHO05D006802 5.2e-52 209.5 361 40.4
Cc04_g04020 Coffea canephora HOM05D005526 ORTHO05D006802 8.8e-52 208.8 334 40.7
Zm00001eb342510 Zea mays HOM05D005526 ORTHO05D006802 2.0e-51 207.6 148 68.2
COL.COLO4_12896 Corchorus olitorius HOM05D005526 ORTHO05D006802 7.4e-51 205.7 361 41.3
Lj5C68G25 Lonicera japonica HOM05D005526 ORTHO05D006802 9.7e-51 205.3 337 38.9
AL2G41300 Arabidopsis lyrata HOM05D005526 ORTHO05D006802 1.7e-50 204.5 340 40.9
RcHm_v2.0_Chr2g0136621 Rosa chinensis HOM05D005526 ORTHO05D006802 2.2e-50 204.1 347 39.2
Oeu063802.2 Olea europaea HOM05D005526 ORTHO05D006802 9.1e-49 198.7 338 41.7
Oeu014842.2 Olea europaea HOM05D005526 ORTHO05D006802 2.6e-48 197.2 206 52.4
HPP92_009843 Vanilla planifolia HOM05D005526 ORTHO05D006802 1.0e-47 195.3 364 37.6
CSS0003126 Camellia sinensis var. sinensis HOM05D005526 ORTHO05D006802 1.1e-46 191.8 338 37.9
SMO196G0028 Selaginella moellendorffii HOM05D005526 ORTHO05D006802 1.2e-45 188.3 345 37.7
SGA_v2.0_scaffold37G14789 Striga asiatica HOM05D005526 ORTHO05D006802 3.7e-42 176.8 435 35.6
ATR1156G007 Amborella trichopoda HOM05D005526 ORTHO05D006802 3.5e-40 170.2 342 38.9
Cre11.g475400 Chlamydomonas reinhardtii HOM05D005526 ORTHO05D006802 1.0e-39 168.7 150 62.0
AagrBONN_evm.TU.Sc2ySwM_368.2431 Anthoceros agrestis HOM05D005526 ORTHO05D006802 8.8e-36 155.6 345 37.4
Haze_16512 Corylus avellana HOM05D005526 ORTHO05D006802 1.2e-32 145.2 171 49.7
Sabra01G0138900 Salix brachista HOM05D005526 ORTHO05D006802 4.6e-24 116.7 79 72.2
ATR1156G076 Amborella trichopoda HOM05D005526 ORTHO05D006802 2.3e-23 114.4 79 73.4
Lalb_Chr14g0373671 Lupinus albus HOM05D005526 ORTHO05D006802 2.3e-23 114.4 79 69.6
AagrBONN_evm.TU.Sc2ySwM_368.2432 Anthoceros agrestis HOM05D005526 ORTHO05D006802 6.6e-23 112.8 79 69.6
TPR.G37278 Trifolium pratense HOM05D005526 ORTHO05D006802 1.5e-22 111.7 79 68.4
FAN05G1558 Fragaria x ananassa HOM05D005526 ORTHO05D006802 1.9e-22 111.3 79 70.9
RcHm_v2.0_Chr2g0136631 Rosa chinensis HOM05D005526 ORTHO05D006802 3.3e-22 110.5 79 70.9
Cc04_g04010 Coffea canephora HOM05D005526 ORTHO05D006802 4.3e-22 110.2 79 69.6
GSVIVG01017250001 Vitis vinifera HOM05D005526 ORTHO05D006802 9.5e-22 109.0 72 72.2
Lj5A68T70 Lonicera japonica HOM05D005526 ORTHO05D006802 3.6e-21 107.1 79 65.8
Haze_16513 Corylus avellana HOM05D005526 ORTHO05D006802 4.7e-21 106.7 214 36.4
CSS0009710 Camellia sinensis var. sinensis HOM05D005526 ORTHO05D006802 8.0e-21 105.9 79 64.6
Sopen06g025280 Solanum pennellii HOM05D005526 ORTHO05D006802 3.1e-20 104.0 79 64.6
PGSC0003DMG401028513 Solanum tuberosum HOM05D005526 ORTHO05D006802 3.1e-20 104.0 79 64.6
HanXRQChr10g0303081 Helianthus annuus HOM05D005526 ORTHO05D006802 1.5e-19 101.7 79 64.6
Gohir.A10G140700 Gossypium hirsutum HOM05D000009 ORTHO05D000008 1.6e-08 65.1 48 64.6
Pp3c25_2940 Physcomitrium patens HOM05D005526 ORTHO05D311957 4.6e-08 63.5 87 42.5
Pp3c6_24500 Physcomitrium patens HOM05D005526 ORTHO05D006802 7.8e-08 62.8 77 50.6


User provided reference genes

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