Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g46444 Chara braunii HOM05D003261 ORTHO05D004230 6.4e-195 684.1 399 100.0
Pp3c16_8560 Physcomitrium patens HOM05D003261 ORTHO05D004230 3.8e-46 189.9 268 45.5
Mapoly0016s0006 Marchantia polymorpha HOM05D003261 ORTHO05D004230 4.6e-44 183.0 267 43.8
SEGI_14553 Sequoiadendron giganteum HOM05D003261 ORTHO05D004230 6.1e-44 182.6 254 44.1
ATR0796G128 Amborella trichopoda HOM05D003261 ORTHO05D004230 1.4e-43 181.4 259 43.2
Pp3c5_15520 Physcomitrium patens HOM05D003261 ORTHO05D004230 9.7e-42 175.3 246 43.9
HPP92_023226 Vanilla planifolia HOM05D003261 ORTHO05D004230 3.1e-40 170.2 254 40.6
CDE09G0842 Ceratophyllum demersum HOM05D003261 ORTHO05D004230 1.2e-39 168.3 259 40.2
CDE08G1027 Ceratophyllum demersum HOM05D003261 ORTHO05D004230 1.5e-39 167.9 259 39.8
Manes.03G196900 Manihot esculenta HOM05D003261 ORTHO05D004230 1.5e-39 167.9 264 41.3
Psat1g155040 Pisum sativum HOM05D003261 ORTHO05D004230 1.5e-39 167.9 254 40.2
Sed0025564 Sechium edule HOM05D003261 ORTHO05D004230 2.0e-39 167.5 264 40.2
Nn3g21489 Nelumbo nucifera HOM05D003261 ORTHO05D004230 5.9e-39 166.0 271 38.7
AagrBONN_evm.TU.Sc2ySwM_228.4942 Anthoceros agrestis HOM05D003261 ORTHO05D004230 7.7e-39 165.6 277 41.2
Nitab4.5_0003111g0030 Nicotiana tabacum HOM05D003261 ORTHO05D004230 1.0e-38 165.2 256 39.1
QL06p009632 Quercus lobata HOM05D003261 ORTHO05D004230 1.3e-38 164.9 264 40.2
Thecc.04G286600 Theobroma cacao HOM05D003261 ORTHO05D004230 1.3e-38 164.9 265 39.2
Duzib151G0067 Durio zibethinus HOM05D003261 ORTHO05D004230 1.7e-38 164.5 265 40.4
Nn4g25790 Nelumbo nucifera HOM05D003261 ORTHO05D004230 2.9e-38 163.7 271 39.1
PGR004G2696 Punica granatum HOM05D003261 ORTHO05D004230 2.9e-38 163.7 260 39.6
Eucgr.H03935 Eucalyptus grandis HOM05D003261 ORTHO05D004230 3.8e-38 163.3 254 39.4
Sc19g0005390 Simmondsia chinensis HOM05D003261 ORTHO05D004230 3.8e-38 163.3 254 40.9
CiPaw.01G147300 Carya illinoinensis HOM05D003261 ORTHO05D004230 8.5e-38 162.2 265 40.0
CsaV3_6G023930 Cucumis sativus L. HOM05D003261 ORTHO05D004230 8.5e-38 162.2 254 39.8
Glyma.15G149300 Glycine max HOM05D003261 ORTHO05D004230 8.5e-38 162.2 254 40.6
TWI09G1311 Tripterygium wilfordii HOM05D003261 ORTHO05D004230 8.5e-38 162.2 264 39.4
VMungo1309G2776 Vigna mungo HOM05D003261 ORTHO05D004230 8.5e-38 162.2 254 40.6
Ca_01925_v3 Cicer arietinum L. HOM05D003261 ORTHO05D004230 1.1e-37 161.8 254 39.4
Haze_01185 Corylus avellana HOM05D003261 ORTHO05D004230 1.1e-37 161.8 264 38.3
Lj6g0023887 Lotus japonicus HOM05D003261 ORTHO05D004230 1.1e-37 161.8 254 39.8
Dinv29761 Davidia involucrata HOM05D003261 ORTHO05D004230 1.4e-37 161.4 265 40.0
Phvul.009G249100 Phaseolus vulgaris HOM05D003261 ORTHO05D004230 1.4e-37 161.4 254 40.6
GSVIVG01035143001 Vitis vinifera HOM05D003261 ORTHO05D004230 1.4e-37 161.4 264 37.9
ClCG06G005050 Citrullus lanatus HOM05D003261 ORTHO05D004230 1.9e-37 161.0 264 39.0
COL.COLO4_13845 Corchorus olitorius HOM05D003261 ORTHO05D004230 1.9e-37 161.0 266 38.3
MSTRG.20825 Avicennia marina HOM05D003261 ORTHO05D004230 2.5e-37 160.6 267 37.8
Cpa.g.sc16.189 Carica papaya HOM05D003261 ORTHO05D004230 2.5e-37 160.6 264 38.6
Glyma.09G043800 Glycine max HOM05D003261 ORTHO05D004230 2.5e-37 160.6 254 39.8
Lj7A515T86 Lonicera japonica HOM05D003261 ORTHO05D004230 2.5e-37 160.6 256 40.6
SalBow3G0655 Salvia bowleyana HOM05D003261 ORTHO05D004230 2.5e-37 160.6 258 38.8
Nitab4.5_0001251g0010 Nicotiana tabacum HOM05D003261 ORTHO05D004230 4.2e-37 159.8 256 38.3
MELO3C021320.2 Cucumis melo HOM05D003261 ORTHO05D004230 7.2e-37 159.1 264 38.6
Gorai.006G261700 Gossypium raimondii HOM05D003261 ORTHO05D004230 7.2e-37 159.1 255 38.8
Hma1.2p1_1185F.1_g264960 Hydrangea macrophylla HOM05D003261 ORTHO05D004230 7.2e-37 159.1 264 40.2
vmacro08167 Vaccinium macrocarpon HOM05D003261 ORTHO05D004230 7.2e-37 159.1 267 37.8
CSS0009030 Camellia sinensis var. sinensis HOM05D003261 ORTHO05D004230 9.4e-37 158.7 264 40.2
CSS0013014 Camellia sinensis var. sinensis HOM05D003261 ORTHO05D004230 9.4e-37 158.7 264 40.2
CANSAT78G0131 Cannabis sativa HOM05D003261 ORTHO05D004230 9.4e-37 158.7 264 37.9
CiPaw.02G081900 Carya illinoinensis HOM05D003261 ORTHO05D004230 9.4e-37 158.7 264 37.9
Gohir.D02G055000 Gossypium hirsutum HOM05D003261 ORTHO05D004230 1.2e-36 158.3 254 38.6
Medtr2g436510 Medicago truncatula HOM05D003261 ORTHO05D004230 1.6e-36 157.9 260 38.5
Os03g0339100 Oryza sativa ssp. japonica HOM05D003261 ORTHO05D004230 1.6e-36 157.9 254 39.4
THA.LOC104821781 Tarenaya hassleriana HOM05D003261 ORTHO05D004230 1.6e-36 157.9 264 39.8
Aqoxy5G00755 Aquilegia oxysepala HOM05D003261 ORTHO05D004230 2.1e-36 157.5 264 38.3
Duzib052G0276 Durio zibethinus HOM05D003261 ORTHO05D004230 2.1e-36 157.5 274 37.6
HanXRQChr17g0561551 Helianthus annuus HOM05D003261 ORTHO05D004230 2.1e-36 157.5 256 36.7
THA.LOC104820293 Tarenaya hassleriana HOM05D003261 ORTHO05D004230 2.7e-36 157.1 264 39.8
Aa31LG10G6240 Aethionema arabicum HOM05D003261 ORTHO05D004230 3.6e-36 156.8 266 39.1
Migut.B01741 Erythranthe guttata HOM05D003261 ORTHO05D004230 3.6e-36 156.8 265 37.0
Sabra10G0008000 Salix brachista HOM05D003261 ORTHO05D004230 3.6e-36 156.8 264 38.6
Zm00001eb051300 Zea mays HOM05D003261 ORTHO05D004230 3.6e-36 156.8 261 37.9
Potri.010G012800 Populus trichocarpa HOM05D003261 ORTHO05D004230 6.1e-36 156.0 264 39.0
Gorai.005G060900 Gossypium raimondii HOM05D003261 ORTHO05D004230 7.9e-36 155.6 254 39.0
Prupe.1G134100 Prunus persica HOM05D003261 ORTHO05D004230 1.0e-35 155.2 265 38.1
Gohir.A02G049900 Gossypium hirsutum HOM05D003261 ORTHO05D004230 2.3e-35 154.1 254 39.8
Thhalv10025068m.g Eutrema salsugineum HOM05D003261 ORTHO05D004230 3.0e-35 153.7 264 36.7
TAR623G1368 Trochodendron aralioides HOM05D003261 ORTHO05D004230 3.0e-35 153.7 271 36.9
arahy.Tifrunner.gnm1.ann1.JJQ0MC Arachis hypogaea HOM05D003261 ORTHO05D004230 3.9e-35 153.3 254 39.0
Carub.0007s2576 Capsella rubella HOM05D003261 ORTHO05D004230 5.1e-35 152.9 264 37.9
SGA_v2.0_scaffold95G28842 Striga asiatica HOM05D003261 ORTHO05D004230 6.7e-35 152.5 267 36.0
Lsat_1_v5_gn_4_36321 Lactuca sativa HOM05D003261 ORTHO05D004230 8.8e-35 152.1 262 35.1
unitig_22.g5357 Utricularia gibba HOM05D003261 ORTHO05D004230 1.1e-34 151.8 263 38.4
Atru.chr4.2874 Acer truncatum HOM05D003261 ORTHO05D004230 1.5e-34 151.4 257 37.4
arahy.Tifrunner.gnm1.ann1.9TJ054 Arachis hypogaea HOM05D003261 ORTHO05D004230 1.5e-34 151.4 254 39.0
BcaC06g33437 Brassica carinata HOM05D003261 ORTHO05D004230 1.5e-34 151.4 264 36.4
A03p49450 Brassica napus HOM05D003261 ORTHO05D004230 1.5e-34 151.4 267 36.7
C07p47500 Brassica napus HOM05D003261 ORTHO05D004230 1.5e-34 151.4 264 36.4
BolC7t45277H Brassica oleracea HOM05D003261 ORTHO05D004230 1.5e-34 151.4 264 36.4
CARHR290440 Cardamine hirsuta HOM05D003261 ORTHO05D004230 1.5e-34 151.4 264 36.7
Peaxi162Scf00056g00015 Petunia axillaris HOM05D003261 ORTHO05D004230 1.5e-34 151.4 256 37.9
AUR62008590 Chenopodium quinoa HOM05D003261 ORTHO05D004230 2.6e-34 150.6 264 38.3
BcaNung00239 Brassica carinata HOM05D003261 ORTHO05D004230 3.3e-34 150.2 269 37.2
Solyc01g094480.4 Solanum lycopersicum HOM05D003261 ORTHO05D004230 3.3e-34 150.2 262 37.4
Sopen01g038290 Solanum pennellii HOM05D003261 ORTHO05D004230 3.3e-34 150.2 262 37.0
BcaC06g32973 Brassica carinata HOM05D003261 ORTHO05D004230 5.7e-34 149.4 264 36.4
COL.COLO4_06938 Corchorus olitorius HOM05D003261 ORTHO05D004230 5.7e-34 149.4 268 35.1
Lalb_Chr15g0083461 Lupinus albus HOM05D003261 ORTHO05D004230 5.7e-34 149.4 254 37.8
MBI16_g12924_MAGBIO Magnolia biondii HOM05D003261 ORTHO05D004230 5.7e-34 149.4 289 34.6
Gohir.D09G239000 Gossypium hirsutum HOM05D003261 ORTHO05D004230 7.4e-34 149.1 266 36.8
PSO170G4560 Papaver somniferum HOM05D003261 ORTHO05D004230 7.4e-34 149.1 266 39.1
EL10Ac7g17420 Beta vulgaris HOM05D003261 ORTHO05D004230 9.7e-34 148.7 254 37.4
Sp3g14940 Schrenkiella parvula HOM05D003261 ORTHO05D004230 9.7e-34 148.7 257 37.4
AL7G39370 Arabidopsis lyrata HOM05D003261 ORTHO05D004230 1.7e-33 147.9 266 36.5
BraA03t14046Z Brassica rapa HOM05D003261 ORTHO05D004230 1.7e-33 147.9 264 36.0
Carub.0003s1638 Capsella rubella HOM05D003261 ORTHO05D004230 2.2e-33 147.5 255 37.3
PSO407G0331 Papaver somniferum HOM05D003261 ORTHO05D004230 2.2e-33 147.5 266 39.1
AUR62034658 Chenopodium quinoa HOM05D003261 ORTHO05D004230 2.8e-33 147.1 271 36.9
ECA234G0824 Erigeron canadensis HOM05D003261 ORTHO05D004230 2.8e-33 147.1 258 35.7
AT4G15900 Arabidopsis thaliana HOM05D003261 ORTHO05D004230 3.7e-33 146.7 270 35.6
CARHR091900 Cardamine hirsuta HOM05D003261 ORTHO05D004230 3.7e-33 146.7 255 34.5
MD00G1184900 Malus domestica HOM05D003261 ORTHO05D004230 3.7e-33 146.7 263 37.3
AL3G29570 Arabidopsis lyrata HOM05D003261 ORTHO05D004230 6.3e-33 146.0 256 35.5
RcHm_v2.0_Chr4g0422851 Rosa chinensis HOM05D003261 ORTHO05D004230 8.2e-33 145.6 263 36.5
FvH4_4g18400 Fragaria vesca HOM05D003261 ORTHO05D004230 1.1e-32 145.2 263 37.6
FAN12G0468 Fragaria x ananassa HOM05D003261 ORTHO05D004230 1.1e-32 145.2 263 37.6
FAN12G4234 Fragaria x ananassa HOM05D003261 ORTHO05D004230 1.1e-32 145.2 263 37.6
FAN17G0608 Fragaria x ananassa HOM05D003261 ORTHO05D004230 1.4e-32 144.8 263 38.0
DCAR_008606 Daucus carota HOM05D003261 ORTHO05D004230 1.8e-32 144.4 256 34.0
SMO340G0096 Selaginella moellendorffii HOM05D003261 ORTHO05D010935 2.4e-32 144.1 102 66.7
Rhsim12G0061000 Rhododendron simsii HOM05D003261 ORTHO05D004230 3.1e-32 143.7 266 35.0
Rhsim06G0116500 Rhododendron simsii HOM05D003261 ORTHO05D004230 4.1e-32 143.3 260 38.5
Ciclev10004853m.g Citrus clementina HOM05D003261 ORTHO05D004230 5.3e-32 142.9 264 35.6
Ah.08g212490 Amaranthus hybridus HOM05D003261 ORTHO05D004230 9.1e-32 142.1 254 35.8
FAN07G1152 Fragaria x ananassa HOM05D003261 ORTHO05D004230 3.5e-31 140.2 263 37.3
Peaxi162Scf00089g00028 Petunia axillaris HOM05D003261 ORTHO05D004230 3.5e-31 140.2 256 36.3
MD16G1167100 Malus domestica HOM05D003261 ORTHO05D004230 7.7e-31 139.0 263 36.9
Actinidia40288 Actinidia chinensis HOM05D003261 ORTHO05D004230 1.3e-30 138.3 267 36.3
Cc02_g37840 Coffea canephora HOM05D003261 ORTHO05D004230 1.7e-30 137.9 77 75.3
SMO240G0024 Selaginella moellendorffii HOM05D003261 ORTHO05D004230 2.9e-30 137.1 70 84.3
BolC1t04740H Brassica oleracea HOM05D003261 ORTHO05D004230 3.8e-30 136.7 256 34.8
TPR.G22357 Trifolium pratense HOM05D003261 ORTHO05D004230 3.8e-30 136.7 102 59.8
AT3G16650 Arabidopsis thaliana HOM05D003261 ORTHO05D004230 1.5e-29 134.8 75 73.3
Sp7g14350 Schrenkiella parvula HOM05D003261 ORTHO05D004230 1.9e-29 134.4 77 72.7
Gohir.A09G238100 Gossypium hirsutum HOM05D003261 ORTHO05D004230 2.5e-29 134.0 72 75.0
MD00G1128100 Malus domestica HOM05D003261 ORTHO05D004230 3.2e-29 133.7 263 35.4
Cre10.g446900 Chlamydomonas reinhardtii HOM05D003261 ORTHO05D004230 5.5e-29 132.9 263 44.1
BraA01t03826Z Brassica rapa HOM05D003261 ORTHO05D004230 2.1e-28 131.0 258 35.3
Aa31LG8G3770 Aethionema arabicum HOM05D003261 ORTHO05D004230 2.7e-28 130.6 80 67.5
C08p32230 Brassica napus HOM05D000211 ORTHO05D041739 4.7e-28 129.8 255 34.5
Actinidia19581 Actinidia chinensis HOM05D003261 ORTHO05D004230 6.1e-28 129.4 275 36.0
MCO14G267 Micromonas commoda HOM05D003261 ORTHO05D004230 8.0e-28 129.0 74 75.7
PSO017G1819 Papaver somniferum HOM05D003261 ORTHO05D004230 8.0e-28 129.0 78 70.5
unitig_8.g3803 Utricularia gibba HOM05D003261 ORTHO05D004230 3.0e-27 127.1 138 47.8
BcaC09g48619 Brassica carinata HOM05D003261 ORTHO05D004230 4.0e-27 126.7 74 68.9
C01p47680 Brassica napus HOM05D003261 ORTHO05D004230 7.5e-26 122.5 72 68.1
Lalb_Chr18g0051601 Lupinus albus HOM05D003261 ORTHO05D004230 9.7e-26 122.1 66 78.8
PRCOL_00003913 Prasinoderma coloniale HOM05D003261 ORTHO05D004230 1.3e-25 121.7 67 76.1
Prupe.6G318200 Prunus persica HOM05D003261 ORTHO05D004230 1.3e-25 121.7 68 72.1
A01p37650 Brassica napus HOM05D003261 ORTHO05D004230 1.1e-24 118.6 78 64.1
MD16G1081900 Malus domestica HOM05D003261 ORTHO05D004230 5.3e-24 116.3 132 47.7
Cfa002537 Carpinus fangiana HOM05D003261 ORTHO05D004230 3.5e-23 113.6 70 71.4
MD05G1262800 Malus domestica HOM05D003261 ORTHO05D004230 1.3e-22 111.7 63 71.4
FvH4_4g23450 Fragaria vesca HOM05D003261 ORTHO05D004230 4.2e-21 106.7 60 76.7
FAN12G3743 Fragaria x ananassa HOM05D003261 ORTHO05D004230 4.2e-21 106.7 60 76.7
PSO478G1326 Papaver somniferum HOM05D003261 ORTHO05D004230 1.6e-20 104.8 58 77.6
Nitab4.5_0014715g0010 Nicotiana tabacum HOM05D003261 ORTHO05D004230 1.0e-19 102.1 55 78.2
Rhsim04G0224200 Rhododendron simsii HOM05D003261 ORTHO05D004230 1.0e-19 102.1 266 31.6
FAN07G0835 Fragaria x ananassa HOM05D003261 ORTHO05D004230 2.3e-19 100.9 61 73.8
TPR.G20574 Trifolium pratense HOM05D003261 ORTHO05D004230 3.0e-19 100.5 63 65.1
Hund20540 Selenicereus undatus HOM05D003261 ORTHO05D004230 5.7e-18 96.3 265 28.7
DCAR_030163 Daucus carota HOM05D003261 ORTHO05D004230 1.3e-17 95.1 53 75.5
AL6G53110 Arabidopsis lyrata HOM05D000915 ORTHO05D001662 2.8e-17 94.0 69 58.0
PGSC0003DMG400008918 Solanum tuberosum HOM05D003261 ORTHO05D004230 8.3e-17 92.4 50 78.0
Haze_27215 Corylus avellana HOM05D003261 ORTHO05D004230 1.1e-16 92.0 81 53.1
DCAR_030161 Daucus carota HOM05D003261 ORTHO05D004230 1.1e-16 92.0 53 73.6
COL.COLO4_10588 Corchorus olitorius HOM05D004885 ORTHO05D006124 1.4e-16 91.7 53 75.5
Aqoxy3G03984 Aquilegia oxysepala HOM05D003261 ORTHO05D004230 9.1e-16 89.0 55 72.7
DCAR_030165 Daucus carota HOM05D003261 ORTHO05D004230 1.2e-15 88.6 50 74.0
Nitab4.5_0000593g0280 Nicotiana tabacum HOM05D003261 ORTHO05D285224 2.9e-14 84.0 51 70.6
DCAR_003343 Daucus carota HOM05D003261 ORTHO05D004230 5.0e-14 83.2 51 70.6
HanXRQChr11g0341891 Helianthus annuus HOM05D003261 ORTHO05D024582 6.5e-14 82.8 58 65.5
ECA234G3111 Erigeron canadensis HOM05D001191 ORTHO05D000979 1.9e-13 81.3 46 73.9
Thhalv10022263m.g Eutrema salsugineum HOM05D003261 ORTHO05D004230 2.5e-13 80.9 253 26.1
TAR365G1013 Trochodendron aralioides HOM05D003261 ORTHO05D004230 7.5e-10 69.3 59 59.3
Haze_18316 Corylus avellana HOM05D003261 ORTHO05D014021 1.1e-08 65.5 31 90.3
Aqoxy3G03983 Aquilegia oxysepala HOM05D003261 ORTHO05D004230 1.4e-08 65.1 50 60.0
BcaC07g40009 Brassica carinata HOM05D000211 ORTHO05D004230 3.1e-08 63.9 258 25.6
Eucgr.H01421 Eucalyptus grandis HOM05D002800 ORTHO05D008563 3.1e-08 63.9 42 54.8
FAN17G2078 Fragaria x ananassa HOM05D003261 ORTHO05D014021 3.1e-08 63.9 35 80.0
Peaxi162Scf00321g00017 Petunia axillaris HOM05D003261 ORTHO05D014021 1.7e-06 58.2 37 70.3
SHI00251 Sapria himalayana HOM05D003261 ORTHO05D004230 5.0e-06 56.6 31 64.5


User provided reference genes

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