Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g41407 Chara braunii HOM05D004387 ORTHO05D005218 4.3e-230 801.2 471 100.0
CBR_g20981 Chara braunii HOM05D004387 ORTHO05D005218 6.7e-34 149.4 435 31.5
Pp3c19_14820 Physcomitrium patens HOM05D004387 ORTHO05D005218 1.3e-32 145.2 436 28.7
GSVIVG01033276001 Vitis vinifera HOM05D004387 ORTHO05D005218 3.7e-32 143.7 404 30.4
arahy.Tifrunner.gnm1.ann1.02RJAW Arachis hypogaea HOM05D004387 ORTHO05D005218 1.1e-31 142.1 401 28.9
arahy.Tifrunner.gnm1.ann1.QD816I Arachis hypogaea HOM05D004387 ORTHO05D005218 1.4e-31 141.7 401 28.9
COL.COLO4_28283 Corchorus olitorius HOM05D004387 ORTHO05D005218 1.8e-31 141.4 406 28.6
Aqoxy5G00267 Aquilegia oxysepala HOM05D004387 ORTHO05D005218 2.4e-31 141.0 406 28.1
Lalb_Chr20g0110501 Lupinus albus HOM05D004387 ORTHO05D005218 2.4e-31 141.0 402 28.9
Lalb_Chr01g0017301 Lupinus albus HOM05D004387 ORTHO05D005218 1.5e-30 138.3 402 28.9
Phvul.011G181200 Phaseolus vulgaris HOM05D004387 ORTHO05D005218 2.0e-30 137.9 404 29.0
TPR.G24500 Trifolium pratense HOM05D004387 ORTHO05D005218 2.6e-30 137.5 405 29.4
Gorai.002G116000 Gossypium raimondii HOM05D004387 ORTHO05D005218 3.5e-30 137.1 403 29.0
PSO357G0544 Papaver somniferum HOM05D004387 ORTHO05D005218 3.5e-30 137.1 406 29.8
CiPaw.09G038200 Carya illinoinensis HOM05D004387 ORTHO05D005218 7.7e-30 136.0 405 28.1
Gohir.D01G090600 Gossypium hirsutum HOM05D004387 ORTHO05D005218 1.3e-29 135.2 406 28.6
Gohir.A01G009000 Gossypium hirsutum HOM05D004387 ORTHO05D005218 1.7e-29 134.8 402 29.1
RcHm_v2.0_Chr3g0482341 Rosa chinensis HOM05D004387 ORTHO05D005218 1.7e-29 134.8 416 28.8
Thecc.05G153400 Theobroma cacao HOM05D004387 ORTHO05D005218 1.7e-29 134.8 406 27.8
MBI11_g09466_MAGBIO Magnolia biondii HOM05D004387 ORTHO05D005218 2.2e-29 134.4 408 28.4
Potri.016G055600 Populus trichocarpa HOM05D004387 ORTHO05D005218 2.2e-29 134.4 406 27.8
Hund05284 Selenicereus undatus HOM05D004387 ORTHO05D005218 2.2e-29 134.4 433 28.6
Psat6g037480 Pisum sativum HOM05D004387 ORTHO05D005218 3.8e-29 133.7 405 28.6
QL02p103266 Quercus lobata HOM05D004387 ORTHO05D005218 5.0e-29 133.3 405 28.1
Sabra06G0035900 Salix brachista HOM05D004387 ORTHO05D005218 5.0e-29 133.3 402 28.4
Glyma.08G246800 Glycine max HOM05D004387 ORTHO05D005218 6.5e-29 132.9 405 28.4
Cfa016818 Carpinus fangiana HOM05D004387 ORTHO05D005218 8.5e-29 132.5 403 28.5
Gohir.A02G158900 Gossypium hirsutum HOM05D004387 ORTHO05D005218 8.5e-29 132.5 406 28.3
Mapoly0071s0030 Marchantia polymorpha HOM05D004387 ORTHO05D005218 8.5e-29 132.5 437 28.6
Duzib093G1767 Durio zibethinus HOM05D004387 ORTHO05D005218 1.1e-28 132.1 406 28.6
FvH4_6g23810 Fragaria vesca HOM05D004387 ORTHO05D005218 1.1e-28 132.1 416 28.4
Manes.08G050500 Manihot esculenta HOM05D004387 ORTHO05D005218 1.1e-28 132.1 406 27.8
CSS0003189 Camellia sinensis var. sinensis HOM05D004387 ORTHO05D005218 1.5e-28 131.7 435 27.1
Potri.006G051200 Populus trichocarpa HOM05D004387 ORTHO05D005218 1.5e-28 131.7 406 27.3
TAR633G2397 Trochodendron aralioides HOM05D004387 ORTHO05D005218 1.5e-28 131.7 433 27.3
Lj6g0019382 Lotus japonicus HOM05D004387 ORTHO05D005218 1.9e-28 131.3 402 27.9
FAN05G1657 Fragaria x ananassa HOM05D004387 ORTHO05D005218 2.5e-28 131.0 416 29.1
Glyma.14G145600 Glycine max HOM05D004387 ORTHO05D005218 2.5e-28 131.0 409 28.6
TWI77G0383 Tripterygium wilfordii HOM05D004387 ORTHO05D005218 2.5e-28 131.0 406 27.1
VMungo0331G1303 Vigna mungo HOM05D004387 ORTHO05D005218 2.5e-28 131.0 404 28.5
Ciclev10005512m.g Citrus clementina HOM05D004387 ORTHO05D005218 3.2e-28 130.6 406 28.6
FAN02G2904 Fragaria x ananassa HOM05D004387 ORTHO05D005218 3.2e-28 130.6 416 29.3
Cre10.g440900 Chlamydomonas reinhardtii HOM05D004387 ORTHO05D005218 4.2e-28 130.2 410 30.2
Aqoxy2G02875 Aquilegia oxysepala HOM05D004387 ORTHO05D005218 5.5e-28 129.8 411 29.0
MELO3C023136.2 Cucumis melo HOM05D004387 ORTHO05D005218 9.4e-28 129.0 411 28.7
Dinv39602 Davidia involucrata HOM05D004387 ORTHO05D005218 9.4e-28 129.0 433 26.8
FAN14G1242 Fragaria x ananassa HOM05D004387 ORTHO05D005218 9.4e-28 129.0 416 28.8
Prupe.7G061000 Prunus persica HOM05D004387 ORTHO05D005218 9.4e-28 129.0 413 28.6
Dinv12482 Davidia involucrata HOM05D004387 ORTHO05D005218 1.2e-27 128.6 433 26.8
HanXRQChr01g0008751 Helianthus annuus HOM05D004387 ORTHO05D005218 1.2e-27 128.6 404 27.7
Lsat_1_v5_gn_5_161440 Lactuca sativa HOM05D004387 ORTHO05D005218 1.2e-27 128.6 441 26.5
Atru.chr1.1097 Acer truncatum HOM05D004387 ORTHO05D005218 1.6e-27 128.3 411 26.5
FAN09G3586 Fragaria x ananassa HOM05D004387 ORTHO05D005218 1.6e-27 128.3 407 29.2
Medtr1g007060 Medicago truncatula HOM05D004387 ORTHO05D005218 1.6e-27 128.3 433 27.3
vmacro09074 Vaccinium macrocarpon HOM05D004387 ORTHO05D005218 1.6e-27 128.3 436 28.2
DCAR_013603 Daucus carota HOM05D004387 ORTHO05D005218 2.7e-27 127.5 406 27.3
Lj4g0008518 Lotus japonicus HOM05D004387 ORTHO05D005218 2.7e-27 127.5 407 27.0
MD12G1073800 Malus domestica HOM05D004387 ORTHO05D005218 4.7e-27 126.7 397 28.0
PSO170G6628 Papaver somniferum HOM05D004387 ORTHO05D005218 4.7e-27 126.7 406 28.6
TWI74G1664 Tripterygium wilfordii HOM05D004387 ORTHO05D005218 4.7e-27 126.7 406 26.6
Ca_03365_v3 Cicer arietinum L. HOM05D004387 ORTHO05D005218 6.1e-27 126.3 404 27.7
Lju124A41T49 Lonicera japonica HOM05D004387 ORTHO05D005218 6.1e-27 126.3 404 28.0
CsaV3_4G011700 Cucumis sativus L. HOM05D004387 ORTHO05D005218 1.0e-26 125.6 411 28.2
Cfa006454 Carpinus fangiana HOM05D004387 ORTHO05D005218 1.4e-26 125.2 385 28.6
SGA_v2.0_scaffold94G28486 Striga asiatica HOM05D004387 ORTHO05D005218 1.8e-26 124.8 404 28.7
CANSAT21G1698 Cannabis sativa HOM05D004387 ORTHO05D005218 2.3e-26 124.4 408 27.2
Cc07_g20870 Coffea canephora HOM05D004387 ORTHO05D005218 2.3e-26 124.4 432 26.6
PGR142G2016 Punica granatum HOM05D004387 ORTHO05D005218 2.3e-26 124.4 403 27.3
Rhsim09G0155500 Rhododendron simsii HOM05D004387 ORTHO05D005218 3.9e-26 123.6 428 26.2
SGA_v2.0_scaffold273G46436 Striga asiatica HOM05D004387 ORTHO05D005218 3.9e-26 123.6 404 28.5
Actinidia17236 Actinidia chinensis HOM05D004387 ORTHO05D005218 6.7e-26 122.9 404 27.0
Ah.13g076470 Amaranthus hybridus HOM05D004387 ORTHO05D005218 6.7e-26 122.9 434 26.5
Sopen06g031800 Solanum pennellii HOM05D004387 ORTHO05D005218 6.7e-26 122.9 433 27.3
Migut.K00090 Erythranthe guttata HOM05D004387 ORTHO05D005218 8.8e-26 122.5 433 27.0
Solyc06g075390.4 Solanum lycopersicum HOM05D004387 ORTHO05D005218 8.8e-26 122.5 433 27.0
THA.LOC104823663 Tarenaya hassleriana HOM05D004387 ORTHO05D005218 8.8e-26 122.5 402 26.4
ECA248G3203 Erigeron canadensis HOM05D004387 ORTHO05D005218 1.1e-25 122.1 409 27.4
Eucgr.A00059 Eucalyptus grandis HOM05D004387 ORTHO05D005218 1.1e-25 122.1 406 26.6
Nitab4.5_0004587g0010 Nicotiana tabacum HOM05D004387 ORTHO05D005218 1.1e-25 122.1 398 26.9
HanXRQChr06g0178491 Helianthus annuus HOM05D004387 ORTHO05D005218 2.6e-25 120.9 404 26.7
HPP92_019752 Vanilla planifolia HOM05D004387 ORTHO05D005218 3.3e-25 120.6 422 25.4
Aa31LG2G10160 Aethionema arabicum HOM05D004387 ORTHO05D005218 4.4e-25 120.2 402 25.6
PGSC0003DMG400007507 Solanum tuberosum HOM05D004387 ORTHO05D005218 4.4e-25 120.2 433 27.0
MSTRG.10813 Avicennia marina HOM05D004387 ORTHO05D005218 5.7e-25 119.8 409 27.9
Peaxi162Scf00354g00222 Petunia axillaris HOM05D004387 ORTHO05D005218 7.4e-25 119.4 404 27.2
CAN.G128.9 Capsicum annuum HOM05D004387 ORTHO05D005218 2.2e-24 117.9 398 27.6
Os11g0311300 Oryza sativa ssp. japonica HOM05D004387 ORTHO05D005218 2.2e-24 117.9 404 27.0
CAN.G1001.5 Capsicum annuum HOM05D004387 ORTHO05D005218 2.8e-24 117.5 433 26.6
Sopen10g030740 Solanum pennellii HOM05D004387 ORTHO05D005218 4.8e-24 116.7 398 27.4
AT1G60080 Arabidopsis thaliana HOM05D004387 ORTHO05D005218 7.0e-23 112.8 193 36.3
Oeu017945.1 Olea europaea HOM05D004387 ORTHO05D005218 9.1e-23 112.5 219 35.6
Carub.0002s0514 Capsella rubella HOM05D004387 ORTHO05D005218 1.2e-22 112.1 241 31.5
CARHR052860 Cardamine hirsuta HOM05D004387 ORTHO05D005218 2.6e-22 110.9 230 32.6
SMO169G0201 Selaginella moellendorffii HOM05D004387 ORTHO05D005218 4.5e-22 110.2 207 36.2
AUR62024448 Chenopodium quinoa HOM05D004387 ORTHO05D005218 5.9e-22 109.8 422 26.5
AL2G16570 Arabidopsis lyrata HOM05D004387 ORTHO05D005218 1.0e-21 109.0 241 30.7
Gohir.D01G090850 Gossypium hirsutum HOM05D004387 ORTHO05D005218 1.0e-21 109.0 199 34.7
Sed0012804 Sechium edule HOM05D004387 ORTHO05D005218 1.3e-21 108.6 247 32.0
Thhalv10023611m.g Eutrema salsugineum HOM05D004387 ORTHO05D005218 1.7e-21 108.2 230 31.7
A09p17690 Brassica napus HOM05D004387 ORTHO05D005218 2.9e-21 107.5 241 30.3
BcaC04g22217 Brassica carinata HOM05D004387 ORTHO05D005218 3.8e-21 107.1 274 29.2
BraA09t37397Z Brassica rapa HOM05D004387 ORTHO05D005218 3.8e-21 107.1 241 30.3
Nn2g15223 Nelumbo nucifera HOM05D004387 ORTHO05D005218 3.8e-21 107.1 243 33.7
BNapus_Darmor_BZH_scaffold_155p00060 Brassica napus HOM05D004387 ORTHO05D005218 5.0e-21 106.7 278 29.1
C09p22030 Brassica napus HOM05D004387 ORTHO05D005218 5.0e-21 106.7 278 29.1
BolC9t55109H Brassica oleracea HOM05D004387 ORTHO05D005218 5.0e-21 106.7 278 29.1
Cpa.g.sc3.336 Carica papaya HOM05D004387 ORTHO05D005218 6.5e-21 106.3 378 26.7
ATR0626G351 Amborella trichopoda HOM05D004387 ORTHO05D005218 1.5e-20 105.1 419 24.8
Gorai.002G010400 Gossypium raimondii HOM05D004387 ORTHO05D005218 1.5e-20 105.1 371 26.1
BcaB07g31201 Brassica carinata HOM05D004387 ORTHO05D005218 2.5e-20 104.4 241 29.5
ClCG04G000130 Citrullus lanatus HOM05D004387 ORTHO05D005218 2.5e-20 104.4 227 31.7
Sp2g04520 Schrenkiella parvula HOM05D004387 ORTHO05D005218 5.5e-20 103.2 241 29.0
AUR62026038 Chenopodium quinoa HOM05D004387 ORTHO05D005218 9.4e-20 102.4 220 33.2
Actinidia38546 Actinidia chinensis HOM05D004387 ORTHO05D005218 1.2e-19 102.1 190 35.3
Nitab4.5_0009442g0010 Nicotiana tabacum HOM05D004387 ORTHO05D005218 2.7e-19 100.9 398 25.6
CSS0001525 Camellia sinensis var. sinensis HOM05D004387 ORTHO05D005218 4.0e-18 97.1 228 32.0
PGSC0003DMG400023725 Solanum tuberosum HOM05D004387 ORTHO05D005218 8.8e-18 95.9 380 26.3
CSS0010572 Camellia sinensis var. sinensis HOM05D004387 ORTHO05D005218 1.5e-17 95.1 433 24.5
Zm00001eb175450 Zea mays HOM05D004387 ORTHO05D005218 1.7e-16 91.7 217 32.7
Zm00001eb036840 Zea mays HOM05D004387 ORTHO05D005218 2.8e-16 90.9 190 32.6
Nitab4.5_0005483g0010 Nicotiana tabacum HOM05D004387 ORTHO05D005218 4.8e-16 90.1 184 32.1
Hma1.2p1_0953F.1_g241060 Hydrangea macrophylla HOM05D004387 ORTHO05D005218 6.3e-16 89.7 260 27.7
CSS0027602 Camellia sinensis var. sinensis HOM05D004387 ORTHO05D005218 8.3e-16 89.4 369 23.8
CDE04G2438 Ceratophyllum demersum HOM05D004387 ORTHO05D005218 8.3e-16 89.4 234 32.5
Gohir.D01G008666 Gossypium hirsutum HOM05D004387 ORTHO05D005218 1.4e-15 88.6 260 29.2
Glyma.18G267600 Glycine max HOM05D004387 ORTHO05D005218 1.6e-14 85.1 253 28.5
Sc13g0001750 Simmondsia chinensis HOM05D004387 ORTHO05D005218 5.9e-14 83.2 80 52.5
SEGI_29832 Sequoiadendron giganteum HOM05D004387 ORTHO05D005218 1.0e-13 82.4 78 53.8
Cc06_g17110 Coffea canephora HOM05D004387 ORTHO05D005218 1.3e-13 82.0 257 27.2
Eucgr.A00263 Eucalyptus grandis HOM05D004387 ORTHO05D005218 1.7e-13 81.6 257 26.5
Sc13g0001760 Simmondsia chinensis HOM05D004387 ORTHO05D005218 3.8e-13 80.5 256 27.3
Eucgr.A00069 Eucalyptus grandis HOM05D004387 ORTHO05D005218 1.1e-12 79.0 402 23.9
Gohir.D01G090350 Gossypium hirsutum HOM05D004387 ORTHO05D005218 1.9e-12 78.2 67 55.2
Solyc10g080130.3 Solanum lycopersicum HOM05D004387 ORTHO05D005218 5.5e-12 76.6 257 27.6
EL10Ac3g07090 Beta vulgaris HOM05D004387 ORTHO05D005218 7.2e-12 76.3 427 24.8
Eucgr.A00063 Eucalyptus grandis HOM05D004387 ORTHO05D005218 1.0e-10 72.4 64 50.0
unitig_46.g18443 Utricularia gibba HOM05D004387 ORTHO05D005218 1.0e-10 72.4 262 26.3
Cc06_g17120 Coffea canephora HOM05D004387 ORTHO05D005218 1.8e-10 71.6 90 44.4
Eucgr.A00267 Eucalyptus grandis HOM05D004387 ORTHO05D005218 5.2e-10 70.1 64 50.0
CSS0024704 Camellia sinensis var. sinensis HOM05D004387 ORTHO05D005218 1.2e-09 68.9 405 22.2
AagrBONN_evm.TU.Sc2ySwM_362.2801 Anthoceros agrestis HOM05D004387 ORTHO05D005218 7.5e-09 66.2 250 27.6
Eucgr.A00265 Eucalyptus grandis HOM05D004387 ORTHO05D005218 1.3e-08 65.5 64 51.6
unitig_46.g18442 Utricularia gibba HOM05D004387 ORTHO05D005218 1.3e-08 65.5 120 34.2
SEGI_27972 Sequoiadendron giganteum HOM05D004387 ORTHO05D005218 2.8e-08 64.3 133 30.8
CSS0046204 Camellia sinensis var. sinensis HOM05D004387 ORTHO05D005218 4.9e-08 63.5 43 65.1
Rhsim01G0200000 Rhododendron simsii HOM05D002238 ORTHO05D001984 6.3e-08 63.2 191 27.7
SEGI_11138 Sequoiadendron giganteum HOM05D004387 ORTHO05D050937 8.3e-08 62.8 56 55.4
Gohir.D01G091400 Gossypium hirsutum HOM05D004387 ORTHO05D005218 1.4e-07 62.0 46 58.7
Zm00001eb317600 Zea mays HOM05D004387 ORTHO05D005218 1.4e-07 62.0 62 48.4
Zm00001eb161840 Zea mays HOM05D004387 ORTHO05D005218 3.1e-07 60.8 62 46.8
Haze_01634 Corylus avellana HOM05D004387 ORTHO05D005218 5.4e-07 60.1 43 62.8
ClCG04G000120 Citrullus lanatus HOM05D004387 ORTHO05D005218 1.2e-06 58.9 132 31.8
Rhsim01G0212800 Rhododendron simsii HOM05D002238 ORTHO05D001984 2.7e-06 57.8 190 26.8
Rhsim06G0175300 Rhododendron simsii HOM05D002238 ORTHO05D001984 5.9e-06 56.6 190 26.8


User provided reference genes

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