Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g39028 Chara braunii HOM05D003365 ORTHO05D003899 0.0e+00 1411.0 818 100.0
Sed0009580 Sechium edule HOM05D003365 ORTHO05D003899 2.2e-24 118.6 228 32.0
AagrBONN_evm.TU.Sc2ySwM_368.1757 Anthoceros agrestis HOM05D003365 ORTHO05D003899 1.4e-23 115.9 758 23.5
Oeu006726.3 Olea europaea HOM05D003365 ORTHO05D003899 2.4e-23 115.2 242 30.2
QL09p054586 Quercus lobata HOM05D003365 ORTHO05D003899 4.2e-23 114.4 229 30.6
THA.LOC104808785 Tarenaya hassleriana HOM05D003365 ORTHO05D003899 1.2e-22 112.8 316 27.5
MSTRG.24620 Avicennia marina HOM05D003365 ORTHO05D003899 2.7e-22 111.7 251 30.7
BraA03t13524Z Brassica rapa HOM05D003365 ORTHO05D003899 2.7e-22 111.7 235 29.8
ClCG09G009060 Citrullus lanatus HOM05D003365 ORTHO05D003899 2.7e-22 111.7 232 30.2
BcaC01g03254 Brassica carinata HOM05D003365 ORTHO05D003899 3.5e-22 111.3 235 30.2
C03p54290 Brassica napus HOM05D003365 ORTHO05D003899 3.5e-22 111.3 235 30.2
MELO3C021013.2 Cucumis melo HOM05D003365 ORTHO05D003899 3.5e-22 111.3 228 29.8
BcaB06g26698 Brassica carinata HOM05D003365 ORTHO05D003899 7.8e-22 110.2 246 28.0
Sed0009490 Sechium edule HOM05D003365 ORTHO05D003899 7.8e-22 110.2 228 30.3
AT3G24800 Arabidopsis thaliana HOM05D003365 ORTHO05D003899 1.0e-21 109.8 284 29.2
BolC3t17715H Brassica oleracea HOM05D003365 ORTHO05D003899 1.3e-21 109.4 235 29.8
Cre02.g098200 Chlamydomonas reinhardtii HOM05D003365 ORTHO05D003899 1.3e-21 109.4 92 51.1
Carub.0003s2521 Capsella rubella HOM05D003365 ORTHO05D003899 1.7e-21 109.0 232 29.7
AL3G40570 Arabidopsis lyrata HOM05D003365 ORTHO05D003899 2.3e-21 108.6 287 28.9
A03p43940 Brassica napus HOM05D003365 ORTHO05D003899 2.3e-21 108.6 259 28.6
THA.LOC104804607 Tarenaya hassleriana HOM05D003365 ORTHO05D003899 2.3e-21 108.6 263 27.8
Pp3c2_17040 Physcomitrium patens HOM05D003365 ORTHO05D003899 3.0e-21 108.2 232 30.2
A07p07410 Brassica napus HOM05D003365 ORTHO05D003899 3.9e-21 107.8 246 28.5
BraA07t28528Z Brassica rapa HOM05D003365 ORTHO05D003899 3.9e-21 107.8 246 28.5
GSVIVG01028643001 Vitis vinifera HOM05D003365 ORTHO05D003899 3.9e-21 107.8 251 29.5
BcaB03g14565 Brassica carinata HOM05D003365 ORTHO05D003899 5.1e-21 107.5 249 27.7
Thhalv10002569m.g Eutrema salsugineum HOM05D003365 ORTHO05D003899 6.6e-21 107.1 278 26.6
Os02g0621500 Oryza sativa ssp. japonica HOM05D003365 ORTHO05D003899 6.6e-21 107.1 261 29.9
Pp3c2_34310 Physcomitrium patens HOM05D003365 ORTHO05D003899 8.7e-21 106.7 232 30.6
Thhalv10002593m.g Eutrema salsugineum HOM05D003365 ORTHO05D003899 1.1e-20 106.3 254 29.5
Sp3g22540 Schrenkiella parvula HOM05D003365 ORTHO05D003899 1.1e-20 106.3 282 26.6
SpUn0027_0020 Schrenkiella parvula HOM05D003365 ORTHO05D003899 1.1e-20 106.3 282 26.6
Sc05g0002210 Simmondsia chinensis HOM05D003365 ORTHO05D003899 1.1e-20 106.3 229 28.8
Medtr4g022320 Medicago truncatula HOM05D003365 ORTHO05D003899 1.5e-20 105.9 231 29.0
Oeu022364.1 Olea europaea HOM05D003365 ORTHO05D003899 1.5e-20 105.9 239 29.7
CsaV3_7G025900 Cucumis sativus L. HOM05D003365 ORTHO05D003899 1.9e-20 105.5 228 29.8
Potri.002G241900 Populus trichocarpa HOM05D003365 ORTHO05D003899 1.9e-20 105.5 250 28.8
Rhsim09G0055000 Rhododendron simsii HOM05D003365 ORTHO05D003899 1.9e-20 105.5 233 30.0
C07p11180 Brassica napus HOM05D003365 ORTHO05D003899 3.3e-20 104.8 246 28.9
MD10G1165000 Malus domestica HOM05D003365 ORTHO05D003899 3.3e-20 104.8 249 28.5
CARHR101150 Cardamine hirsuta HOM05D003365 ORTHO05D003899 4.3e-20 104.4 263 27.4
Migut.N00374 Erythranthe guttata HOM05D003365 ORTHO05D003899 4.3e-20 104.4 263 29.7
Lj1g0007670 Lotus japonicus HOM05D003365 ORTHO05D003899 4.3e-20 104.4 271 28.0
VMungo1383G0959 Vigna mungo HOM05D003365 ORTHO05D003899 5.6e-20 104.0 234 28.6
Lsat_1_v5_gn_1_72781 Lactuca sativa HOM05D003365 ORTHO05D003899 9.6e-20 103.2 230 28.3
arahy.Tifrunner.gnm1.ann1.2FCG8X Arachis hypogaea HOM05D003365 ORTHO05D003899 1.3e-19 102.8 246 28.9
arahy.Tifrunner.gnm1.ann1.E2CR6D Arachis hypogaea HOM05D003365 ORTHO05D003899 1.3e-19 102.8 246 28.9
RcHm_v2.0_Chr6g0284931 Rosa chinensis HOM05D003365 ORTHO05D003899 1.3e-19 102.8 229 29.3
Glyma.18G171400 Glycine max HOM05D003365 ORTHO05D003899 1.6e-19 102.4 230 27.8
BcaC06g35760 Brassica carinata HOM05D003365 ORTHO05D003899 2.1e-19 102.1 246 28.9
BolC7t41590H Brassica oleracea HOM05D003365 ORTHO05D003899 2.1e-19 102.1 246 28.9
Glyma.08G354400 Glycine max HOM05D003365 ORTHO05D003899 2.1e-19 102.1 229 27.1
Lalb_Chr12g0209691 Lupinus albus HOM05D003365 ORTHO05D003899 2.1e-19 102.1 256 25.8
Cpa.g.sc8.160 Carica papaya HOM05D003365 ORTHO05D003899 3.6e-19 101.3 308 26.6
Eucgr.K02172 Eucalyptus grandis HOM05D003365 ORTHO05D003899 3.6e-19 101.3 250 30.0
Thecc.01G226500 Theobroma cacao HOM05D003365 ORTHO05D003899 3.6e-19 101.3 264 27.7
Cc01_g17080 Coffea canephora HOM05D003365 ORTHO05D003899 4.8e-19 100.9 235 28.5
Eucgr.K02171 Eucalyptus grandis HOM05D003365 ORTHO05D003899 4.8e-19 100.9 240 29.2
Psat0s1248g0040 Pisum sativum HOM05D003365 ORTHO05D003899 4.8e-19 100.9 230 27.4
PGSC0003DMG400029661 Solanum tuberosum HOM05D003365 ORTHO05D003899 4.8e-19 100.9 230 30.0
CSS0049236 Camellia sinensis var. sinensis HOM05D003365 ORTHO05D003899 6.2e-19 100.5 236 27.1
Dinv38244 Davidia involucrata HOM05D003365 ORTHO05D003899 6.2e-19 100.5 230 28.7
Manes.12G045750 Manihot esculenta HOM05D003365 ORTHO05D003899 6.2e-19 100.5 233 29.6
Nitab4.5_0002428g0050 Nicotiana tabacum HOM05D003365 ORTHO05D003899 6.2e-19 100.5 229 28.8
Cc01_g17090 Coffea canephora HOM05D003365 ORTHO05D003899 8.1e-19 100.1 252 28.2
Dinv04652 Davidia involucrata HOM05D003365 ORTHO05D003899 8.1e-19 100.1 230 28.3
DCAR_018569 Daucus carota HOM05D003365 ORTHO05D003899 1.1e-18 99.8 275 27.3
TPR.G5612 Trifolium pratense HOM05D003365 ORTHO05D003899 1.1e-18 99.8 275 27.3
CAN.G500.11 Capsicum annuum HOM05D003365 ORTHO05D003899 1.4e-18 99.4 229 27.9
Gohir.A09G204300 Gossypium hirsutum HOM05D003365 ORTHO05D003899 1.4e-18 99.4 241 30.3
Medtr7g058430 Medicago truncatula HOM05D003365 ORTHO05D003899 1.8e-18 99.0 251 27.1
Sopen09g034680 Solanum pennellii HOM05D003365 ORTHO05D003899 1.8e-18 99.0 230 30.0
Ah.08g214240 Amaranthus hybridus HOM05D000836 ORTHO05D000709 2.4e-18 98.6 229 27.5
Ca_07518_v3 Cicer arietinum L. HOM05D003365 ORTHO05D003899 2.4e-18 98.6 252 25.8
Ca_30737_v3 Cicer arietinum L. HOM05D003365 ORTHO05D003899 2.4e-18 98.6 252 25.8
Gohir.D09G198000 Gossypium hirsutum HOM05D003365 ORTHO05D003899 2.4e-18 98.6 232 30.6
Gorai.006G221600 Gossypium raimondii HOM05D003365 ORTHO05D003899 2.4e-18 98.6 232 30.6
Phvul.008G125500 Phaseolus vulgaris HOM05D003365 ORTHO05D003899 5.3e-18 97.4 276 25.4
SEGI_11490 Sequoiadendron giganteum HOM05D003365 ORTHO05D003899 5.3e-18 97.4 231 29.4
SEGI_15541 Sequoiadendron giganteum HOM05D003365 ORTHO05D003899 5.3e-18 97.4 231 29.4
Zm00001eb247460 Zea mays HOM05D003365 ORTHO05D003899 5.3e-18 97.4 260 29.6
FAN22G2379 Fragaria x ananassa HOM05D003365 ORTHO05D003899 6.9e-18 97.1 230 28.7
Gohir.D11G143900 Gossypium hirsutum HOM05D003365 ORTHO05D003899 9.0e-18 96.7 230 30.4
Gorai.007G154100 Gossypium raimondii HOM05D003365 ORTHO05D003899 9.0e-18 96.7 230 30.4
HanXRQChr15g0468271 Helianthus annuus HOM05D003365 ORTHO05D003899 9.0e-18 96.7 229 28.4
Psat3g144800 Pisum sativum HOM05D003365 ORTHO05D003899 9.0e-18 96.7 251 26.3
MSTRG.18389 Avicennia marina HOM05D003365 ORTHO05D003899 1.2e-17 96.3 229 26.6
Gohir.A11G137500 Gossypium hirsutum HOM05D003365 ORTHO05D003899 1.2e-17 96.3 230 29.6
Solyc09g091790.3 Solanum lycopersicum HOM05D003365 ORTHO05D003899 1.2e-17 96.3 230 29.6
HanXRQChr01g0022261 Helianthus annuus HOM05D003365 ORTHO05D003899 1.5e-17 95.9 280 26.8
Lsat_1_v5_gn_5_179340 Lactuca sativa HOM05D003365 ORTHO05D003899 1.5e-17 95.9 250 27.2
TPR.G5559 Trifolium pratense HOM05D003365 ORTHO05D003899 1.5e-17 95.9 231 26.4
HPP92_012644 Vanilla planifolia HOM05D003365 ORTHO05D003899 1.5e-17 95.9 242 28.1
Nn3g19957 Nelumbo nucifera HOM05D003365 ORTHO05D003899 2.0e-17 95.5 232 29.3
Duzib138G0916 Durio zibethinus HOM05D003365 ORTHO05D003899 2.6e-17 95.1 229 28.4
Gorai.005G131100 Gossypium raimondii HOM05D003365 ORTHO05D003899 2.6e-17 95.1 229 28.4
HanXRQChr01g0022241 Helianthus annuus HOM05D003365 ORTHO05D003899 2.6e-17 95.1 241 27.4
Lj3g0005766 Lotus japonicus HOM05D003365 ORTHO05D003899 2.6e-17 95.1 280 23.9
Lalb_Chr19g0125591 Lupinus albus HOM05D003365 ORTHO05D003899 3.4e-17 94.7 246 26.4
Gohir.D02G123200 Gossypium hirsutum HOM05D003365 ORTHO05D003899 5.8e-17 94.0 229 28.4
FvH4_4g00570 Fragaria vesca HOM05D003365 ORTHO05D003899 7.6e-17 93.6 230 26.5
FAN12G1463 Fragaria x ananassa HOM05D003365 ORTHO05D003899 7.6e-17 93.6 230 26.5
Lj2C1132T2 Lonicera japonica HOM05D003365 ORTHO05D003899 7.6e-17 93.6 229 29.3
TWI75G0239 Tripterygium wilfordii HOM05D003365 ORTHO05D003899 7.6e-17 93.6 261 27.2
Ciclev10023514m.g Citrus clementina HOM05D003365 ORTHO05D003899 9.9e-17 93.2 243 28.8
Peaxi162Scf00047g00641 Petunia axillaris HOM05D003365 ORTHO05D003899 9.9e-17 93.2 231 29.4
Aqoxy2G03887 Aquilegia oxysepala HOM05D003365 ORTHO05D003899 1.3e-16 92.8 230 29.1
HanXRQChr09g0249321 Helianthus annuus HOM05D003365 ORTHO05D003899 1.3e-16 92.8 230 26.5
SGA_v2.0_scaffold1G00747 Striga asiatica HOM05D003365 ORTHO05D003899 1.7e-16 92.4 303 24.8
MD04G1005700 Malus domestica HOM05D003365 ORTHO05D003899 2.2e-16 92.0 231 28.6
ATR0736G227 Amborella trichopoda HOM05D003365 ORTHO05D003899 2.9e-16 91.7 266 26.3
Hund05541 Selenicereus undatus HOM05D003365 ORTHO05D003899 3.8e-16 91.3 229 27.5
Hund05542 Selenicereus undatus HOM05D003365 ORTHO05D003899 3.8e-16 91.3 229 27.5
MCO16G654 Micromonas commoda HOM05D003365 ORTHO05D003899 4.9e-16 90.9 350 29.1
vmacro14754 Vaccinium macrocarpon HOM05D003365 ORTHO05D003899 4.9e-16 90.9 228 28.1
CiPaw.03G149600 Carya illinoinensis HOM05D003365 ORTHO05D003899 6.4e-16 90.5 229 28.8
Duzib151G0831 Durio zibethinus HOM05D003365 ORTHO05D003899 6.4e-16 90.5 228 27.6
Migut.D00534 Erythranthe guttata HOM05D003365 ORTHO05D003899 6.4e-16 90.5 252 27.0
Potri.003G178700 Populus trichocarpa HOM05D003365 ORTHO05D003899 6.4e-16 90.5 229 27.9
AUR62031803 Chenopodium quinoa HOM05D003365 ORTHO05D003899 8.4e-16 90.1 273 27.1
COL.COLO4_10278 Corchorus olitorius HOM05D003365 ORTHO05D003899 8.4e-16 90.1 313 27.2
PSO017G5557 Papaver somniferum HOM05D003365 ORTHO05D003899 8.4e-16 90.1 228 28.1
EL10Ac7g17831 Beta vulgaris HOM05D003365 ORTHO05D003899 1.1e-15 89.7 240 29.2
Sabra03G0131000 Salix brachista HOM05D003365 ORTHO05D003899 1.1e-15 89.7 232 28.4
TAR365G1159 Trochodendron aralioides HOM05D003365 ORTHO05D003899 1.1e-15 89.7 229 27.9
ECA248G1941 Erigeron canadensis HOM05D003365 ORTHO05D000452 1.4e-15 89.4 287 25.8
TWI36G1690 Tripterygium wilfordii HOM05D003365 ORTHO05D003899 1.4e-15 89.4 230 28.7
Ciclev10004856m.g Citrus clementina HOM05D003365 ORTHO05D003899 1.9e-15 89.0 265 26.0
RcHm_v2.0_Chr4g0386021 Rosa chinensis HOM05D003365 ORTHO05D003899 3.2e-15 88.2 230 26.1
Atru.chr4.1724 Acer truncatum HOM05D003365 ORTHO05D003899 4.2e-15 87.8 231 26.4
CANSAT01G3135 Cannabis sativa HOM05D003365 ORTHO05D003899 4.2e-15 87.8 81 40.7
Prupe.1G006100 Prunus persica HOM05D003365 ORTHO05D003899 4.2e-15 87.8 232 25.4
ECA247G2566 Erigeron canadensis HOM05D003365 ORTHO05D003899 7.1e-15 87.0 233 28.8
Pp3c7_700 Physcomitrium patens HOM05D003365 ORTHO05D003899 1.2e-14 86.3 79 43.0
Pp3c11_26150 Physcomitrium patens HOM05D003365 ORTHO05D003899 3.5e-14 84.7 97 37.1
SEGI_02131 Sequoiadendron giganteum HOM05D003365 ORTHO05D003899 3.5e-14 84.7 98 44.9
Nn1g07847 Nelumbo nucifera HOM05D003365 ORTHO05D003899 4.6e-14 84.3 231 26.8
Prupe.8G203400 Prunus persica HOM05D003365 ORTHO05D003899 4.6e-14 84.3 81 40.7
SGA_v2.0_scaffold216G42379 Striga asiatica HOM05D003365 ORTHO05D003899 4.6e-14 84.3 83 41.0
MBI10_g18941_MAGBIO Magnolia biondii HOM05D003365 ORTHO05D003899 6.0e-14 84.0 229 27.5
Thecc.04G205700 Theobroma cacao HOM05D003365 ORTHO05D003899 6.0e-14 84.0 228 27.2
Gohir.A03G094000 Gossypium hirsutum HOM05D003365 ORTHO05D003899 7.9e-14 83.6 76 43.4
Aa31sc154G60 Aethionema arabicum HOM05D003365 ORTHO05D003899 1.3e-13 82.8 790 20.6
CDE01G0789 Ceratophyllum demersum HOM05D003365 ORTHO05D003899 1.8e-13 82.4 228 27.2
Eucgr.L00369 Eucalyptus grandis HOM05D003365 ORTHO05D003899 1.8e-13 82.4 129 38.0
Medtr7g058450 Medicago truncatula HOM05D003365 ORTHO05D003899 1.8e-13 82.4 76 46.1
Pp3c1_21360 Physcomitrium patens HOM05D003365 ORTHO05D003899 1.8e-13 82.4 327 26.0
QL09p054597 Quercus lobata HOM05D003365 ORTHO05D003899 8.7e-13 80.1 88 39.8
Actinidia09483 Actinidia chinensis HOM05D003365 ORTHO05D003899 1.1e-12 79.7 93 36.6
FAN12G0224 Fragaria x ananassa HOM05D003365 ORTHO05D003899 1.1e-12 79.7 232 26.3
PRCOL_00001994 Prasinoderma coloniale HOM05D003365 ORTHO05D003899 1.5e-12 79.3 65 55.4
Aa31LG4G13410 Aethionema arabicum HOM05D003365 ORTHO05D003899 3.3e-12 78.2 260 25.8
Haze_24790 Corylus avellana HOM05D003365 ORTHO05D003899 3.3e-12 78.2 124 37.9
AUR62008908 Chenopodium quinoa HOM05D003365 ORTHO05D003899 7.4e-12 77.0 103 33.0
TPR.G9032 Trifolium pratense HOM05D003365 ORTHO05D003899 7.4e-12 77.0 81 39.5
Potri.001G049300 Populus trichocarpa HOM05D003365 ORTHO05D003899 9.6e-12 76.6 74 44.6
Haze_24791 Corylus avellana HOM05D003365 ORTHO05D003899 3.7e-11 74.7 76 40.8
BcaC06g35759 Brassica carinata HOM05D003365 ORTHO05D003899 6.2e-11 73.9 65 49.2
BolC7t41593H Brassica oleracea HOM05D003365 ORTHO05D003899 6.2e-11 73.9 65 49.2
unitig_22.g5307 Utricularia gibba HOM05D003365 ORTHO05D003899 1.1e-10 73.2 59 52.5
FAN24G3306 Fragaria x ananassa HOM05D003365 ORTHO05D003899 3.1e-10 71.6 229 26.2
Oeu022255.1 Olea europaea HOM05D003365 ORTHO05D003899 4.0e-10 71.2 69 42.0
Nitab4.5_0004214g0020 Nicotiana tabacum HOM05D003365 ORTHO05D003899 1.2e-09 69.7 72 41.7
Cpa.g.sc494.2 Carica papaya HOM05D003365 ORTHO05D003899 3.4e-09 68.2 63 46.0
SHI01314 Sapria himalayana HOM05D000023 ORTHO05D000014 1.0e-08 66.6 67 44.8
vmacro05009 Vaccinium macrocarpon HOM05D003365 ORTHO05D003899 2.2e-08 65.5 57 47.4
FAN17G1699 Fragaria x ananassa HOM05D003365 ORTHO05D003899 3.8e-08 64.7 58 43.1
FAN27G1822 Fragaria x ananassa HOM05D003365 ORTHO05D003899 1.4e-07 62.8 47 57.4
Rhsim09G0055200 Rhododendron simsii HOM05D003365 ORTHO05D003899 1.9e-07 62.4 48 54.2
Cre01.g035400 Chlamydomonas reinhardtii HOM05D000041 ORTHO05D006140 9.3e-07 60.1 93 35.5
Cre13.g565950 Chlamydomonas reinhardtii HOM05D000041 ORTHO05D006140 1.6e-06 59.3 86 34.9
COL.COLO4_04564 Corchorus olitorius HOM05D003365 ORTHO05D003899 6.0e-06 57.4 53 49.1


User provided reference genes

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