Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g30359 Chara braunii HOM05D003678 ORTHO05D004340 3.0e-241 838.2 454 100.0
Mapoly0085s0044 Marchantia polymorpha HOM05D003678 ORTHO05D004340 8.1e-85 318.5 464 44.0
SMO143G0266 Selaginella moellendorffii HOM05D003678 ORTHO05D004340 1.5e-83 314.3 464 42.7
MBI16_g31785_MAGBIO Magnolia biondii HOM05D003678 ORTHO05D004340 3.7e-82 309.7 464 40.3
Pp3c2_4670 Physcomitrium patens HOM05D003678 ORTHO05D004340 1.9e-81 307.4 464 43.1
PSO170G4284 Papaver somniferum HOM05D003678 ORTHO05D004340 2.4e-81 307.0 472 39.4
SEGI_16726 Sequoiadendron giganteum HOM05D003678 ORTHO05D004340 5.4e-81 305.8 469 40.7
Hma1.2p1_0379F.1_g139790 Hydrangea macrophylla HOM05D003678 ORTHO05D004340 1.2e-80 304.7 469 39.9
Hma1.2p1_0891F.1_g233175 Hydrangea macrophylla HOM05D003678 ORTHO05D004340 1.2e-80 304.7 469 39.9
MD15G1108800 Malus domestica HOM05D003678 ORTHO05D004340 2.1e-80 303.9 464 39.7
TAR626G0897 Trochodendron aralioides HOM05D003678 ORTHO05D004340 2.1e-80 303.9 460 40.0
Zm00001eb226230 Zea mays HOM05D003678 ORTHO05D004340 2.7e-80 303.5 470 41.5
AL7G20640 Arabidopsis lyrata HOM05D003678 ORTHO05D004340 3.5e-80 303.1 462 39.6
Eucgr.C04005 Eucalyptus grandis HOM05D003678 ORTHO05D004340 6.0e-80 302.4 470 40.2
Carub.0007s0914 Capsella rubella HOM05D003678 ORTHO05D004340 1.3e-79 301.2 462 39.0
Cfa013262 Carpinus fangiana HOM05D003678 ORTHO05D004340 6.6e-79 298.9 467 39.2
Lj5g0015114 Lotus japonicus HOM05D003678 ORTHO05D004340 6.6e-79 298.9 468 40.4
Aqoxy7G03011 Aquilegia oxysepala HOM05D003678 ORTHO05D004340 1.1e-78 298.1 468 40.6
FAN20G0096 Fragaria x ananassa HOM05D003678 ORTHO05D004340 1.5e-78 297.7 464 39.9
Manes.03G003200 Manihot esculenta HOM05D003678 ORTHO05D004340 1.5e-78 297.7 468 39.5
Haze_21723 Corylus avellana HOM05D003678 ORTHO05D004340 1.9e-78 297.4 467 39.2
Prupe.1G461000 Prunus persica HOM05D003678 ORTHO05D004340 3.3e-78 296.6 468 39.7
TAR626G0756 Trochodendron aralioides HOM05D003678 ORTHO05D004340 4.3e-78 296.2 464 40.1
FvH4_2g36910 Fragaria vesca HOM05D003678 ORTHO05D004340 9.5e-78 295.0 464 39.2
Potri.006G275300 Populus trichocarpa HOM05D003678 ORTHO05D004340 1.2e-77 294.7 461 38.6
HanXRQChr16g0513211 Helianthus annuus HOM05D003678 ORTHO05D004340 2.1e-77 293.9 464 39.2
Sabra06G0213100 Salix brachista HOM05D003678 ORTHO05D004340 2.1e-77 293.9 465 38.1
DCAR_000669 Daucus carota HOM05D003678 ORTHO05D004340 3.6e-77 293.1 461 39.3
Thhalv10025366m.g Eutrema salsugineum HOM05D003678 ORTHO05D004340 6.2e-77 292.4 468 39.1
Aa31LG7G11470 Aethionema arabicum HOM05D003678 ORTHO05D004340 1.8e-76 290.8 465 37.6
Ciclev10008476m.g Citrus clementina HOM05D003678 ORTHO05D004340 1.8e-76 290.8 467 40.0
RcHm_v2.0_Chr6g0304871 Rosa chinensis HOM05D003678 ORTHO05D004340 1.8e-76 290.8 464 40.1
Os06g0693500 Oryza sativa ssp. japonica HOM05D003678 ORTHO05D004340 2.4e-76 290.4 464 39.7
HPP92_010767 Vanilla planifolia HOM05D003678 ORTHO05D004340 4.0e-76 289.7 467 41.3
ECA233G4849 Erigeron canadensis HOM05D003678 ORTHO05D004340 5.2e-76 289.3 465 38.9
CANSAT11G2609 Cannabis sativa HOM05D003678 ORTHO05D004340 6.8e-76 288.9 470 38.9
Medtr1g009770 Medicago truncatula HOM05D003678 ORTHO05D004340 6.8e-76 288.9 468 38.7
CARHR239300 Cardamine hirsuta HOM05D003678 ORTHO05D004340 8.9e-76 288.5 467 39.6
ATR0580G292 Amborella trichopoda HOM05D003678 ORTHO05D004340 1.2e-75 288.1 464 41.8
CANSAT25G1292 Cannabis sativa HOM05D003678 ORTHO05D004340 1.2e-75 288.1 468 40.6
Atru.chr7.2631 Acer truncatum HOM05D003678 ORTHO05D004340 1.5e-75 287.7 466 38.4
CDE02G2639 Ceratophyllum demersum HOM05D003678 ORTHO05D004340 1.5e-75 287.7 475 38.3
FAN15G2333 Fragaria x ananassa HOM05D003678 ORTHO05D004340 2.0e-75 287.3 464 40.5
Hund03284 Selenicereus undatus HOM05D003678 ORTHO05D004340 2.0e-75 287.3 478 38.7
Duzib168G2376 Durio zibethinus HOM05D003678 ORTHO05D004340 2.6e-75 287.0 468 39.1
CSS0027905 Camellia sinensis var. sinensis HOM05D003678 ORTHO05D004340 5.8e-75 285.8 468 38.5
PSO063G6534 Papaver somniferum HOM05D003678 ORTHO05D004340 5.8e-75 285.8 471 39.9
BcaC09g51921 Brassica carinata HOM05D003678 ORTHO05D004340 7.6e-75 285.4 468 39.1
BcaNung04590 Brassica carinata HOM05D003678 ORTHO05D004340 7.6e-75 285.4 470 38.1
C01p07630 Brassica napus HOM05D003678 ORTHO05D004340 7.6e-75 285.4 468 39.1
AUR62009050 Chenopodium quinoa HOM05D003678 ORTHO05D004340 7.6e-75 285.4 469 38.6
Potri.018G006300 Populus trichocarpa HOM05D003678 ORTHO05D004340 7.6e-75 285.4 467 37.7
arahy.Tifrunner.gnm1.ann1.P9WJGS Arachis hypogaea HOM05D003678 ORTHO05D004340 1.3e-74 284.6 471 38.9
Thecc.09G006300 Theobroma cacao HOM05D003678 ORTHO05D004340 1.3e-74 284.6 464 39.2
AT2G24500 Arabidopsis thaliana HOM05D003678 ORTHO05D004340 1.7e-74 284.3 462 38.1
Dinv03491 Davidia involucrata HOM05D003678 ORTHO05D004340 2.2e-74 283.9 467 36.8
Lsat_1_v5_gn_6_15381 Lactuca sativa HOM05D003678 ORTHO05D004340 2.2e-74 283.9 464 37.9
Gohir.D05G067600 Gossypium hirsutum HOM05D003678 ORTHO05D004340 2.9e-74 283.5 469 38.8
Sp7g29280 Schrenkiella parvula HOM05D003678 ORTHO05D004340 2.9e-74 283.5 473 37.6
vmacro05102 Vaccinium macrocarpon HOM05D003678 ORTHO05D004340 2.9e-74 283.5 469 37.7
MSTRG.25776 Avicennia marina HOM05D003678 ORTHO05D004340 3.8e-74 283.1 469 39.2
Gorai.009G068400 Gossypium raimondii HOM05D003678 ORTHO05D004340 3.8e-74 283.1 469 39.0
AUR62020613 Chenopodium quinoa HOM05D003678 ORTHO05D004340 4.9e-74 282.7 469 38.6
Ca_12869_v3 Cicer arietinum L. HOM05D003678 ORTHO05D004340 4.9e-74 282.7 472 38.1
Cc08_g06430 Coffea canephora HOM05D003678 ORTHO05D004340 4.9e-74 282.7 468 38.0
Glyma.11G172819 Glycine max HOM05D003678 ORTHO05D004340 4.9e-74 282.7 471 38.9
Gohir.A05G065000 Gossypium hirsutum HOM05D003678 ORTHO05D004340 4.9e-74 282.7 468 38.9
SalBow4G1160 Salvia bowleyana HOM05D003678 ORTHO05D004340 4.9e-74 282.7 466 39.3
BolC1t00743H Brassica oleracea HOM05D003678 ORTHO05D004340 8.4e-74 282.0 469 38.8
Glyma.17G189600 Glycine max HOM05D003678 ORTHO05D004340 8.4e-74 282.0 471 38.9
Lalb_Chr14g0362261 Lupinus albus HOM05D003678 ORTHO05D004340 8.4e-74 282.0 464 39.9
unitig_32.g11644 Utricularia gibba HOM05D003678 ORTHO05D004340 8.4e-74 282.0 468 38.9
A01p06860 Brassica napus HOM05D003678 ORTHO05D004340 1.1e-73 281.6 468 38.5
Peaxi162Scf00459g00837 Petunia axillaris HOM05D003678 ORTHO05D004340 1.1e-73 281.6 471 38.2
TWI63G1033 Tripterygium wilfordii HOM05D003678 ORTHO05D004340 1.1e-73 281.6 465 37.4
TAR383G0188 Trochodendron aralioides HOM05D003678 ORTHO05D004340 1.1e-73 281.6 464 39.4
Oeu040383.1 Olea europaea HOM05D003678 ORTHO05D004340 1.4e-73 281.2 467 40.9
arahy.Tifrunner.gnm1.ann1.DFD6U9 Arachis hypogaea HOM05D003678 ORTHO05D004340 1.9e-73 280.8 471 38.4
Glyma.11G172610 Glycine max HOM05D003678 ORTHO05D004340 2.4e-73 280.4 471 38.6
Glyma.17G200200 Glycine max HOM05D003678 ORTHO05D004340 2.4e-73 280.4 471 38.6
QL12p024946 Quercus lobata HOM05D003678 ORTHO05D004340 2.4e-73 280.4 467 37.9
BraA01t00637Z Brassica rapa HOM05D003678 ORTHO05D004340 3.2e-73 280.0 469 38.2
FAN27G1333 Fragaria x ananassa HOM05D003678 ORTHO05D004340 4.2e-73 279.6 464 38.4
SGA_v2.0_scaffold193G40661 Striga asiatica HOM05D003678 ORTHO05D004340 4.2e-73 279.6 502 38.2
Thhalv10000189m.g Eutrema salsugineum HOM05D003678 ORTHO05D004340 5.4e-73 279.3 462 37.7
PGR044G2213 Punica granatum HOM05D003678 ORTHO05D004340 7.1e-73 278.9 465 38.9
Sp4g03510 Schrenkiella parvula HOM05D003678 ORTHO05D004340 7.1e-73 278.9 462 39.8
TAR383G0531 Trochodendron aralioides HOM05D003678 ORTHO05D004340 7.1e-73 278.9 464 39.2
VMungo0647G0546 Vigna mungo HOM05D003678 ORTHO05D004340 7.1e-73 278.9 463 37.6
Cpa.g.sc23.4 Carica papaya HOM05D003678 ORTHO05D004340 9.2e-73 278.5 469 37.7
CiPaw.08G019100 Carya illinoinensis HOM05D003678 ORTHO05D004340 9.2e-73 278.5 467 37.5
Phvul.001G058800 Phaseolus vulgaris HOM05D003678 ORTHO05D004340 9.2e-73 278.5 468 38.2
Carub.0004s0384 Capsella rubella HOM05D003678 ORTHO05D004340 1.2e-72 278.1 469 36.9
AL4G14980 Arabidopsis lyrata HOM05D003678 ORTHO05D004340 3.5e-72 276.6 462 40.3
Lalb_Chr24g0402471 Lupinus albus HOM05D003678 ORTHO05D004340 4.6e-72 276.2 471 40.1
Dinv18146 Davidia involucrata HOM05D003678 ORTHO05D004340 6.0e-72 275.8 470 37.0
THA.LOC104803597 Tarenaya hassleriana HOM05D003678 ORTHO05D004340 6.0e-72 275.8 462 38.5
AagrBONN_evm.TU.Sc2ySwM_228.5550 Anthoceros agrestis HOM05D003678 ORTHO05D004340 7.8e-72 275.4 456 38.4
Aa31LG2G18930 Aethionema arabicum HOM05D003678 ORTHO05D004340 1.0e-71 275.0 462 37.4
BcaC02g08448 Brassica carinata HOM05D003678 ORTHO05D004340 5.1e-71 272.7 463 39.3
BolC4t26963H Brassica oleracea HOM05D003678 ORTHO05D004340 5.1e-71 272.7 463 39.3
Nitab4.5_0005481g0010 Nicotiana tabacum HOM05D003678 ORTHO05D004340 5.1e-71 272.7 468 38.5
HanXRQChr12g0384061 Helianthus annuus HOM05D003678 ORTHO05D004340 6.6e-71 272.3 460 36.1
Psat6g032480 Pisum sativum HOM05D003678 ORTHO05D004340 6.6e-71 272.3 464 40.1
TPR.G12018 Trifolium pratense HOM05D003678 ORTHO05D004340 6.6e-71 272.3 476 43.1
AT4G31420 Arabidopsis thaliana HOM05D003678 ORTHO05D004340 1.1e-70 271.6 462 40.5
BcaB06g27975 Brassica carinata HOM05D003678 ORTHO05D004340 1.1e-70 271.6 462 38.3
Gorai.001G001500 Gossypium raimondii HOM05D003678 ORTHO05D004340 1.1e-70 271.6 470 37.4
Gohir.D07G001800 Gossypium hirsutum HOM05D003678 ORTHO05D004340 1.9e-70 270.8 469 37.3
Sopen12g032280 Solanum pennellii HOM05D003678 ORTHO05D004340 7.3e-70 268.9 475 37.5
Migut.A00439 Erythranthe guttata HOM05D003678 ORTHO05D004340 9.6e-70 268.5 469 37.1
C04p54110 Brassica napus HOM05D003678 ORTHO05D004340 1.2e-69 268.1 463 39.7
Sed0004467 Sechium edule HOM05D003678 ORTHO05D004340 1.2e-69 268.1 466 37.6
Nitab4.5_0001110g0180 Nicotiana tabacum HOM05D003678 ORTHO05D004340 1.6e-69 267.7 480 37.7
Rhsim07G0170500 Rhododendron simsii HOM05D003678 ORTHO05D004340 1.6e-69 267.7 470 36.2
BraA09t41018Z Brassica rapa HOM05D003678 ORTHO05D004340 2.1e-69 267.3 464 39.2
EL10Ac2g03738 Beta vulgaris HOM05D003678 ORTHO05D004340 2.8e-69 266.9 499 35.5
Nitab4.5_0000555g0240 Nicotiana tabacum HOM05D003678 ORTHO05D004340 2.8e-69 266.9 470 37.2
Solyc12g096450.2 Solanum lycopersicum HOM05D003678 ORTHO05D004340 3.6e-69 266.5 475 37.3
Ah.06g192800 Amaranthus hybridus HOM05D003678 ORTHO05D004340 4.7e-69 266.2 467 36.2
Gohir.A07G001400 Gossypium hirsutum HOM05D003678 ORTHO05D004340 1.1e-68 265.0 470 37.0
A04p18800 Brassica napus HOM05D003678 ORTHO05D004340 4.0e-68 263.1 462 39.0
CARHR117530 Cardamine hirsuta HOM05D003678 ORTHO05D004340 6.9e-68 262.3 464 39.9
PGSC0003DMG400029367 Solanum tuberosum HOM05D003678 ORTHO05D004340 1.2e-67 261.5 473 38.5
MELO3C003636.2 Cucumis melo HOM05D003678 ORTHO05D004340 2.6e-67 260.4 465 39.1
BraA04t17489Z Brassica rapa HOM05D003678 ORTHO05D004340 9.9e-67 258.5 462 39.8
Peaxi162Scf00045g01736 Petunia axillaris HOM05D003678 ORTHO05D004340 9.9e-67 258.5 471 36.9
CAN.G566.61 Capsicum annuum HOM05D003678 ORTHO05D004340 2.2e-66 257.3 474 38.0
Sed0010708 Sechium edule HOM05D003678 ORTHO05D004340 2.9e-66 256.9 467 39.2
CsaV3_3G047000 Cucumis sativus L. HOM05D003678 ORTHO05D004340 6.4e-66 255.8 465 39.4
GSVIVG01035534001 Vitis vinifera HOM05D003678 ORTHO05D004340 6.4e-66 255.8 463 38.2
Cc08_g06510 Coffea canephora HOM05D003678 ORTHO05D004340 2.4e-65 253.8 426 37.1
A09p56240 Brassica napus HOM05D003678 ORTHO05D004340 1.6e-64 251.1 489 36.0
HanXRQChr16g0504351 Helianthus annuus HOM05D003678 ORTHO05D004340 6.0e-64 249.2 414 37.7
CiPaw.07G213700 Carya illinoinensis HOM05D003678 ORTHO05D004340 1.7e-63 247.7 433 36.5
COL.COLO4_19043 Corchorus olitorius HOM05D003678 ORTHO05D004340 7.3e-62 242.3 434 38.2
Actinidia03577 Actinidia chinensis HOM05D003678 ORTHO05D004340 2.1e-61 240.7 465 35.7
Lsat_1_v5_gn_3_27981 Lactuca sativa HOM05D003678 ORTHO05D004340 1.8e-60 237.7 480 34.8
Nn8g40427 Nelumbo nucifera HOM05D003678 ORTHO05D004340 1.8e-60 237.7 377 38.7
CAN.G673.15 Capsicum annuum HOM05D003678 ORTHO05D004340 2.9e-58 230.3 413 35.4
PGSC0003DMG401026315 Solanum tuberosum HOM05D003678 ORTHO05D004340 1.9e-57 227.6 413 35.8
MD08G1131000 Malus domestica HOM05D003678 ORTHO05D004340 3.2e-57 226.9 334 38.3
Manes.16G136200 Manihot esculenta HOM05D003678 ORTHO05D004340 3.5e-56 223.4 476 34.7
ClCG05G017500 Citrullus lanatus HOM05D003678 ORTHO05D004340 1.3e-55 221.5 397 36.5
Sc09g0008090 Simmondsia chinensis HOM05D003678 ORTHO05D004340 8.7e-55 218.8 339 38.9
Sopen08g002420 Solanum pennellii HOM05D003678 ORTHO05D004340 4.8e-53 213.0 399 33.6
Lj7A752T54 Lonicera japonica HOM05D003678 ORTHO05D004340 8.1e-53 212.2 462 33.5
Pp3c14_26000 Physcomitrium patens HOM05D003678 ORTHO05D004340 1.4e-52 211.5 249 49.0
Solyc08g006470.4 Solanum lycopersicum HOM05D003678 ORTHO05D004340 1.7e-50 204.5 402 32.8
BcaC07g40924 Brassica carinata HOM05D003678 ORTHO05D004340 1.4e-49 201.4 451 32.8
BolC8t51492H Brassica oleracea HOM05D003678 ORTHO05D004340 2.7e-48 197.2 490 32.9
C08p39190 Brassica napus HOM05D003678 ORTHO05D004340 2.5e-41 174.1 386 34.5
Cre17.g716400 Chlamydomonas reinhardtii HOM05D003678 ORTHO05D004340 1.5e-38 164.9 479 33.2
CDE05G3053 Ceratophyllum demersum HOM05D003678 ORTHO05D004340 1.3e-37 161.8 314 35.4
Oeu018570.1 Olea europaea HOM05D003678 ORTHO05D004340 1.3e-37 161.8 366 30.6
Medtr1g047010 Medicago truncatula HOM05D003678 ORTHO05D004340 4.8e-37 159.8 418 33.0
CDE05G1087 Ceratophyllum demersum HOM05D003678 ORTHO05D004340 3.1e-36 157.1 421 29.7
Nitab4.5_0004131g0030 Nicotiana tabacum HOM05D003678 ORTHO05D004340 3.1e-36 157.1 455 29.5
PRCOL_00002050 Prasinoderma coloniale HOM05D003678 ORTHO05D004340 6.5e-34 149.4 473 29.6
BcaC07g37410 Brassica carinata HOM05D003678 ORTHO05D004340 2.1e-32 144.4 308 30.2
ECA246G1371 Erigeron canadensis HOM05D000763 ORTHO05D004340 3.0e-31 140.6 361 29.6
TAR383G1077 Trochodendron aralioides HOM05D003678 ORTHO05D004340 1.5e-30 138.3 440 30.0
Cfa025296 Carpinus fangiana HOM05D003678 ORTHO05D004340 1.0e-26 125.6 334 29.9
BcaC05g27745 Brassica carinata HOM05D003678 ORTHO05D004340 6.5e-18 96.3 97 46.4
C05p37300 Brassica napus HOM05D003678 ORTHO05D004340 6.5e-18 96.3 97 46.4
C08p08900 Brassica napus HOM05D003678 ORTHO05D004340 6.5e-18 96.3 97 46.4
BolC1t05292H Brassica oleracea HOM05D003678 ORTHO05D004340 6.5e-10 69.7 276 24.6
ECA246G4346 Erigeron canadensis HOM05D000087 ORTHO05D009473 1.1e-09 68.9 100 40.0
A04p16990 Brassica napus HOM05D003678 ORTHO05D004340 3.2e-09 67.4 84 40.5
ECA246G0440 Erigeron canadensis HOM05D003678 ORTHO05D004340 7.2e-09 66.2 70 45.7
Cfa024431 Carpinus fangiana HOM05D003678 ORTHO05D124744 9.4e-09 65.9 90 37.8
BcaB03g16788 Brassica carinata HOM05D003678 ORTHO05D004340 1.6e-08 65.1 133 32.3
BcaC01g05020 Brassica carinata HOM05D003678 ORTHO05D004340 4.7e-08 63.5 109 35.8
BolC8t47735H Brassica oleracea HOM05D003678 ORTHO05D004340 4.7e-08 63.5 107 35.5
CAN.G4.3 Capsicum annuum HOM05D003678 ORTHO05D004340 1.4e-07 62.0 87 40.2
C03p31060 Brassica napus HOM05D003678 ORTHO05D004340 5.2e-07 60.1 107 34.6
Medtr5g061270 Medicago truncatula HOM05D003678 ORTHO05D004340 8.8e-07 59.3 149 30.9
ECA233G0490 Erigeron canadensis HOM05D003678 ORTHO05D004340 4.4e-06 57.0 83 37.3
BcaC09g48198 Brassica carinata HOM05D003678 ORTHO05D004340 5.7e-06 56.6 76 36.8
Pp3c17_19500 Physcomitrium patens HOM05D003678 ORTHO05D004340 9.7e-06 55.8 51 49.0


User provided reference genes

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