Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR230790 Cardamine hirsuta HOM05D001758 ORTHO05D023731 1.1e-131 473.4 244 100.0
Thhalv10024360m.g Eutrema salsugineum HOM05D001758 ORTHO05D004430 1.0e-65 254.2 193 75.6
Carub.0007s1765 Capsella rubella HOM05D001758 ORTHO05D004430 8.5e-65 251.1 190 75.3
AT4G23460 Arabidopsis thaliana HOM05D001758 ORTHO05D004430 1.9e-64 250.0 190 75.8
AL7G30000 Arabidopsis lyrata HOM05D001758 ORTHO05D004430 2.5e-64 249.6 190 75.8
Sp7g21360 Schrenkiella parvula HOM05D001758 ORTHO05D004430 3.3e-61 239.2 193 72.0
Aa31LG6G6650 Aethionema arabicum HOM05D001758 ORTHO05D004430 4.4e-61 238.8 191 72.8
CARHR255190 Cardamine hirsuta HOM05D001758 ORTHO05D004430 5.0e-57 225.3 198 67.2
Aa31LG9G10850 Aethionema arabicum HOM05D001758 ORTHO05D004430 7.2e-56 221.5 198 67.2
BcaB01g01638 Brassica carinata HOM05D001758 ORTHO05D004430 7.2e-56 221.5 198 67.2
A03p54320 Brassica napus HOM05D001758 ORTHO05D004430 7.2e-56 221.5 186 70.4
BraA03t14494Z Brassica rapa HOM05D001758 ORTHO05D004430 7.2e-56 221.5 186 70.4
Thhalv10028407m.g Eutrema salsugineum HOM05D001758 ORTHO05D004430 9.4e-56 221.1 198 66.7
AL6G45790 Arabidopsis lyrata HOM05D001758 ORTHO05D004430 1.2e-55 220.7 196 66.3
BcaC04g21134 Brassica carinata HOM05D001758 ORTHO05D004430 1.6e-55 220.3 198 66.2
A09p27770 Brassica napus HOM05D001758 ORTHO05D004430 1.6e-55 220.3 198 66.2
C09p35180 Brassica napus HOM05D001758 ORTHO05D004430 1.6e-55 220.3 198 66.2
BolC9t56364H Brassica oleracea HOM05D001758 ORTHO05D004430 1.6e-55 220.3 198 66.2
BraA09t38347Z Brassica rapa HOM05D001758 ORTHO05D004430 1.6e-55 220.3 198 66.2
C07p52720 Brassica napus HOM05D001758 ORTHO05D004430 8.0e-55 218.0 186 69.9
BolC7t45772H Brassica oleracea HOM05D001758 ORTHO05D004430 8.0e-55 218.0 186 69.9
Sp6g06070 Schrenkiella parvula HOM05D001758 ORTHO05D004430 2.3e-54 216.5 198 65.2
THA.LOC104813023 Tarenaya hassleriana HOM05D001758 ORTHO05D004430 8.8e-54 214.5 187 66.3
THA.LOC104814663 Tarenaya hassleriana HOM05D001758 ORTHO05D004430 4.4e-53 212.2 186 67.2
THA.LOC104806416 Tarenaya hassleriana HOM05D001758 ORTHO05D004430 5.7e-53 211.8 195 65.6
Carub.0006s3029 Capsella rubella HOM05D001758 ORTHO05D004430 8.2e-52 208.0 198 63.6
TWI60G1699 Tripterygium wilfordii HOM05D001758 ORTHO05D004430 1.8e-51 206.8 200 60.5
Lalb_Chr05g0211451 Lupinus albus HOM05D001758 ORTHO05D004430 3.5e-50 202.6 197 59.9
Potri.001G101400 Populus trichocarpa HOM05D001758 ORTHO05D004430 3.5e-50 202.6 201 59.7
CANSAT21G2030 Cannabis sativa HOM05D001758 ORTHO05D004430 5.9e-50 201.8 207 58.9
AT4G11380 Arabidopsis thaliana HOM05D001758 ORTHO05D004430 7.7e-50 201.4 193 63.7
Sabra03G0092700 Salix brachista HOM05D001758 ORTHO05D004430 1.3e-49 200.7 201 59.7
Duzib205G0508 Durio zibethinus HOM05D001758 ORTHO05D004430 2.2e-49 199.9 203 58.1
Potri.003G130400 Populus trichocarpa HOM05D001758 ORTHO05D004430 2.2e-49 199.9 201 59.2
Glyma.11G095501 Glycine max HOM05D001758 ORTHO05D004430 5.0e-49 198.7 186 61.8
QL12p032420 Quercus lobata HOM05D001758 ORTHO05D004430 1.9e-48 196.8 200 61.5
AUR62010715 Chenopodium quinoa HOM05D001758 ORTHO05D004430 3.2e-48 196.1 193 60.1
Phvul.002G034100 Phaseolus vulgaris HOM05D001758 ORTHO05D004430 3.2e-48 196.1 197 57.4
CSS0009285 Camellia sinensis var. sinensis HOM05D001758 ORTHO05D004430 5.5e-48 195.3 198 60.1
Cfa012203 Carpinus fangiana HOM05D001758 ORTHO05D004430 9.4e-48 194.5 182 59.3
CiPaw.12G091200 Carya illinoinensis HOM05D001758 ORTHO05D004430 9.4e-48 194.5 201 58.7
vmacro13195 Vaccinium macrocarpon HOM05D001758 ORTHO05D004430 9.4e-48 194.5 201 58.7
Gohir.A03G019300 Gossypium hirsutum HOM05D001758 ORTHO05D004430 1.6e-47 193.7 199 58.3
Gorai.003G157000 Gossypium raimondii HOM05D001758 ORTHO05D004430 1.6e-47 193.7 199 58.3
Glyma.12G021600 Glycine max HOM05D001758 ORTHO05D004430 2.1e-47 193.4 197 57.9
Lj3g0022998 Lotus japonicus HOM05D001758 ORTHO05D004430 2.1e-47 193.4 197 58.4
VMungo1215G2939 Vigna mungo HOM05D001758 ORTHO05D004430 2.7e-47 193.0 196 58.2
CSS0019297 Camellia sinensis var. sinensis HOM05D001758 ORTHO05D004430 4.7e-47 192.2 198 59.6
Gohir.D03G149700 Gossypium hirsutum HOM05D001758 ORTHO05D004430 4.7e-47 192.2 199 57.8
arahy.Tifrunner.gnm1.ann1.KK02P6 Arachis hypogaea HOM05D001758 ORTHO05D004430 8.0e-47 191.4 188 59.6
Duzib084G0730 Durio zibethinus HOM05D001758 ORTHO05D004430 1.4e-46 190.7 205 56.6
AUR62027253 Chenopodium quinoa HOM05D001758 ORTHO05D004430 1.8e-46 190.3 193 57.5
Eucgr.D01829 Eucalyptus grandis HOM05D001758 ORTHO05D004430 1.8e-46 190.3 196 60.7
Hund14840 Selenicereus undatus HOM05D001758 ORTHO05D004430 1.8e-46 190.3 200 56.5
Lalb_Chr16g0376841 Lupinus albus HOM05D001758 ORTHO05D004430 2.3e-46 189.9 197 56.9
Thecc.03G282700 Theobroma cacao HOM05D001758 ORTHO05D004430 2.3e-46 189.9 201 56.7
Nn5g30834 Nelumbo nucifera HOM05D001758 ORTHO05D004430 3.0e-46 189.5 198 57.1
Prupe.5G103900 Prunus persica HOM05D001758 ORTHO05D004430 3.0e-46 189.5 202 57.4
Haze_08813 Corylus avellana HOM05D001758 ORTHO05D004430 6.8e-46 188.3 200 56.0
COL.COLO4_34497 Corchorus olitorius HOM05D001758 ORTHO05D004430 8.8e-46 188.0 198 56.6
Rhsim07G0088700 Rhododendron simsii HOM05D001758 ORTHO05D004430 8.8e-46 188.0 199 57.3
Glyma.01G227000 Glycine max HOM05D001758 ORTHO05D004430 1.5e-45 187.2 189 58.2
SalBow1G0547 Salvia bowleyana HOM05D001758 ORTHO05D004430 2.0e-45 186.8 194 59.3
Sabra01G0076400 Salix brachista HOM05D001758 ORTHO05D004430 3.4e-45 186.0 201 56.2
Atru.chr9.2154 Acer truncatum HOM05D001758 ORTHO05D004430 4.4e-45 185.7 208 55.8
arahy.Tifrunner.gnm1.ann1.AY0C6D Arachis hypogaea HOM05D001758 ORTHO05D004430 4.4e-45 185.7 191 58.6
CSS0038252 Camellia sinensis var. sinensis HOM05D001758 ORTHO05D004430 4.4e-45 185.7 199 56.3
EL10Ac5g12803 Beta vulgaris HOM05D001758 ORTHO05D004430 5.7e-45 185.3 186 57.0
VMungo1127G1185 Vigna mungo HOM05D001758 ORTHO05D004430 5.7e-45 185.3 194 55.7
Glyma.11G015700 Glycine max HOM05D001758 ORTHO05D004430 7.5e-45 184.9 196 57.1
Gorai.004G213900 Gossypium raimondii HOM05D001758 ORTHO05D004430 7.5e-45 184.9 198 55.1
Psat7g179680 Pisum sativum HOM05D001758 ORTHO05D004430 7.5e-45 184.9 197 58.4
Manes.02G136100 Manihot esculenta HOM05D001758 ORTHO05D004430 9.8e-45 184.5 202 55.4
Phvul.011G078200 Phaseolus vulgaris HOM05D001758 ORTHO05D004430 9.8e-45 184.5 194 55.7
HPP92_008911 Vanilla planifolia HOM05D001758 ORTHO05D004430 1.3e-44 184.1 201 54.7
Actinidia14582 Actinidia chinensis HOM05D001758 ORTHO05D004430 2.2e-44 183.3 201 55.2
Medtr4g076210 Medicago truncatula HOM05D001758 ORTHO05D004430 2.2e-44 183.3 196 57.1
Cpa.g.sc180.11 Carica papaya HOM05D001758 ORTHO05D004430 2.8e-44 183.0 214 53.3
ClCG02G002170 Citrullus lanatus HOM05D001758 ORTHO05D004430 4.8e-44 182.2 200 56.0
Ciclev10018786m.g Citrus clementina HOM05D001758 ORTHO05D004430 4.8e-44 182.2 201 56.2
TPR.G22570 Trifolium pratense HOM05D001758 ORTHO05D004430 8.3e-44 181.4 191 57.6
Aqoxy5G01113 Aquilegia oxysepala HOM05D001758 ORTHO05D004430 1.1e-43 181.0 200 52.5
MELO3C018841.2 Cucumis melo HOM05D001758 ORTHO05D004430 1.1e-43 181.0 234 50.0
Gohir.D08G202500 Gossypium hirsutum HOM05D001758 ORTHO05D004430 1.1e-43 181.0 198 55.1
Sed0023378 Sechium edule HOM05D001758 ORTHO05D004430 1.1e-43 181.0 200 57.5
Dinv38922 Davidia involucrata HOM05D001758 ORTHO05D004430 1.4e-43 180.6 187 56.7
RcHm_v2.0_Chr7g0197091 Rosa chinensis HOM05D001758 ORTHO05D004430 1.4e-43 180.6 200 57.0
Gohir.A08G184000 Gossypium hirsutum HOM05D001758 ORTHO05D004430 3.1e-43 179.5 198 56.1
MD06G1087800 Malus domestica HOM05D001758 ORTHO05D004430 4.1e-43 179.1 202 55.4
MBI10_g48303_MAGBIO Magnolia biondii HOM05D001758 ORTHO05D004430 5.4e-43 178.7 197 54.8
FvH4_5g02830 Fragaria vesca HOM05D001758 ORTHO05D004430 7.0e-43 178.3 203 55.7
FAN18G3406 Fragaria x ananassa HOM05D001758 ORTHO05D004430 7.0e-43 178.3 203 55.7
MBI07_g21076_MAGBIO Magnolia biondii HOM05D001758 ORTHO05D004430 7.0e-43 178.3 198 54.0
FAN04G0007 Fragaria x ananassa HOM05D001758 ORTHO05D004430 1.6e-42 177.2 203 55.2
FAN08G0671 Fragaria x ananassa HOM05D001758 ORTHO05D004430 1.6e-42 177.2 203 55.2
FAN13G1114 Fragaria x ananassa HOM05D001758 ORTHO05D004430 1.6e-42 177.2 203 55.2
PGSC0003DMG400012194 Solanum tuberosum HOM05D001758 ORTHO05D004430 1.6e-42 177.2 191 57.6
CsaV3_7G003330 Cucumis sativus L. HOM05D001758 ORTHO05D004430 2.0e-42 176.8 204 52.5
MD14G1108600 Malus domestica HOM05D001758 ORTHO05D004430 2.0e-42 176.8 201 55.2
Nitab4.5_0001522g0060 Nicotiana tabacum HOM05D001758 ORTHO05D004430 2.0e-42 176.8 197 55.3
Solyc08g081320.3 Solanum lycopersicum HOM05D001758 ORTHO05D004430 2.0e-42 176.8 194 57.2
Sopen08g029630 Solanum pennellii HOM05D001758 ORTHO05D004430 2.0e-42 176.8 194 57.2
Cc08_g15000 Coffea canephora HOM05D001758 ORTHO05D004430 4.5e-42 175.6 199 55.8
Oeu011033.1 Olea europaea HOM05D001758 ORTHO05D004430 5.9e-42 175.3 201 55.2
Lsat_1_v5_gn_6_86320 Lactuca sativa HOM05D001758 ORTHO05D004430 7.7e-42 174.9 188 58.5
Peaxi162Scf00074g02036 Petunia axillaris HOM05D001758 ORTHO05D004430 7.7e-42 174.9 197 54.8
Nn6g31920 Nelumbo nucifera HOM05D001758 ORTHO05D004430 1.3e-41 174.1 197 51.8
Nitab4.5_0002975g0020 Nicotiana tabacum HOM05D001758 ORTHO05D004430 1.3e-41 174.1 197 54.3
Os03g0355600 Oryza sativa ssp. japonica HOM05D001758 ORTHO05D004430 1.3e-41 174.1 195 53.3
TAR625G0205 Trochodendron aralioides HOM05D001758 ORTHO05D004430 1.7e-41 173.7 200 52.5
MELO3C005693.2 Cucumis melo HOM05D001758 ORTHO05D004430 2.3e-41 173.3 200 55.5
Sed0001016 Sechium edule HOM05D001758 ORTHO05D004430 2.3e-41 173.3 201 55.7
SGA_v2.0_scaffold48G18078 Striga asiatica HOM05D001758 ORTHO05D004430 2.3e-41 173.3 197 58.4
ATR0329G044 Amborella trichopoda HOM05D001758 ORTHO05D004430 2.9e-41 172.9 198 52.0
CsaV3_5G002640 Cucumis sativus L. HOM05D001758 ORTHO05D004430 3.8e-41 172.6 200 56.0
DCAR_005564 Daucus carota HOM05D001758 ORTHO05D004430 3.8e-41 172.6 190 54.7
MSTRG.1854 Avicennia marina HOM05D001758 ORTHO05D004430 6.6e-41 171.8 199 53.3
GSVIVG01019391001 Vitis vinifera HOM05D001758 ORTHO05D004430 6.6e-41 171.8 200 53.5
ECA233G5934 Erigeron canadensis HOM05D001758 ORTHO05D004430 8.6e-41 171.4 199 55.3
CDE08G1656 Ceratophyllum demersum HOM05D001758 ORTHO05D004430 1.1e-40 171.0 192 54.7
HanXRQChr13g0416041 Helianthus annuus HOM05D001758 ORTHO05D004430 1.5e-40 170.6 193 53.9
CAN.G532.6 Capsicum annuum HOM05D001758 ORTHO05D004430 4.2e-40 169.1 196 51.5
Lj8A218T22 Lonicera japonica HOM05D001758 ORTHO05D004430 5.5e-40 168.7 202 52.5
PSO541G5667 Papaver somniferum HOM05D001758 ORTHO05D004430 5.5e-40 168.7 198 52.0
ClCG01G002530 Citrullus lanatus HOM05D001758 ORTHO05D004430 1.2e-39 167.5 200 55.5
PSO675G0536 Papaver somniferum HOM05D001758 ORTHO05D004430 1.2e-39 167.5 200 51.0
Zm00001eb017130 Zea mays HOM05D001758 ORTHO05D004430 6.1e-39 165.2 194 51.5
HanXRQChr13g0394171 Helianthus annuus HOM05D001758 ORTHO05D004430 1.4e-38 164.1 194 54.1
ECA240G1636 Erigeron canadensis HOM05D001758 ORTHO05D004430 5.2e-38 162.2 192 53.1
Zm00001eb394540 Zea mays HOM05D001758 ORTHO05D004430 5.2e-38 162.2 197 51.8
Lsat_1_v5_gn_6_5441 Lactuca sativa HOM05D001758 ORTHO05D004430 6.8e-38 161.8 191 51.8
Oeu007743.2 Olea europaea HOM05D001758 ORTHO05D004430 6.8e-38 161.8 194 53.6
Migut.E01190 Erythranthe guttata HOM05D001758 ORTHO05D004430 8.9e-38 161.4 192 55.2
SEGI_36929 Sequoiadendron giganteum HOM05D001758 ORTHO05D004430 2.0e-37 160.2 194 50.5
Lsat_1_v5_gn_3_6140 Lactuca sativa HOM05D001758 ORTHO05D004430 3.4e-37 159.5 198 51.0
SMO298G0016 Selaginella moellendorffii HOM05D001758 ORTHO05D004430 9.8e-37 157.9 181 51.9
SGA_v2.0_scaffold144G35913 Striga asiatica HOM05D001758 ORTHO05D004430 6.3e-36 155.2 182 57.1
BcaNung04480 Brassica carinata HOM05D001758 ORTHO05D004430 5.9e-34 148.7 123 73.2
Pp3c1_19340 Physcomitrium patens HOM05D001758 ORTHO05D004430 5.9e-34 148.7 196 48.0
Pp3c14_2460 Physcomitrium patens HOM05D001758 ORTHO05D004430 2.3e-33 146.7 196 45.9
AagrBONN_evm.TU.Sc2ySwM_117.2557 Anthoceros agrestis HOM05D001758 ORTHO05D004430 8.6e-33 144.8 209 47.4
CSS0042527 Camellia sinensis var. sinensis HOM05D001758 ORTHO05D004430 1.1e-32 144.4 173 52.6
Pp3c2_18140 Physcomitrium patens HOM05D001758 ORTHO05D004430 1.1e-32 144.4 196 45.4
Mapoly0002s0295 Marchantia polymorpha HOM05D001758 ORTHO05D004430 5.6e-32 142.1 214 46.3
vmacro13146 Vaccinium macrocarpon HOM05D001758 ORTHO05D004430 9.5e-32 141.4 197 52.3
CBR_g10902 Chara braunii HOM05D001758 ORTHO05D004430 1.6e-31 140.6 215 46.5
Actinidia33743 Actinidia chinensis HOM05D001758 ORTHO05D004430 4.9e-28 129.0 176 50.0
arahy.Tifrunner.gnm1.ann1.BNAN0X Arachis hypogaea HOM05D001758 ORTHO05D023731 2.4e-27 126.7 121 59.5
Sc01g0009710 Simmondsia chinensis HOM05D001758 ORTHO05D004430 1.3e-25 120.9 141 56.7
Ah.07g196400 Amaranthus hybridus HOM05D001758 ORTHO05D004430 3.0e-25 119.8 98 65.3
CDE02G4367 Ceratophyllum demersum HOM05D001758 ORTHO05D004430 9.5e-24 114.8 165 46.7
SHI07182 Sapria himalayana HOM05D000105 ORTHO05D000023 9.5e-24 114.8 123 55.3
arahy.Tifrunner.gnm1.ann1.Z0QB2S Arachis hypogaea HOM05D001758 ORTHO05D023731 4.4e-21 105.9 72 75.0
PRCOL_00003609 Prasinoderma coloniale HOM05D001758 ORTHO05D004430 9.2e-19 98.2 204 40.2
Lj2A182G26 Lonicera japonica HOM05D001758 ORTHO05D023731 4.6e-18 95.9 125 48.8
CAN.G849.10 Capsicum annuum HOM05D001758 ORTHO05D004430 3.0e-17 93.2 66 71.2
MBI10_g48086_MAGBIO Magnolia biondii HOM05D001758 ORTHO05D004430 2.8e-15 86.7 170 40.6
Lalb_Chr09g0320541 Lupinus albus HOM05D001758 ORTHO05D023731 1.1e-14 84.7 48 85.4
CAN.G491.13 Capsicum annuum HOM05D001758 ORTHO05D018856 1.8e-14 84.0 127 43.3
CAN.G205.21 Capsicum annuum HOM05D001758 ORTHO05D018856 1.5e-13 80.9 150 37.3
unitig_62.g23539 Utricularia gibba HOM05D001758 ORTHO05D004430 1.4e-11 74.3 42 85.7
BolC3t15858H Brassica oleracea HOM05D001758 ORTHO05D004430 2.4e-11 73.6 82 52.4
unitig_62.g23540 Utricularia gibba HOM05D001758 ORTHO05D017200 1.0e-09 68.2 45 73.3
Cre11.g478156 Chlamydomonas reinhardtii HOM05D001758 ORTHO05D004430 1.7e-09 67.4 60 53.3
HanXRQChr05g0145951 Helianthus annuus HOM05D001758 ORTHO05D017200 6.6e-09 65.5 43 65.1
Actinidia36812 Actinidia chinensis HOM05D001758 ORTHO05D023347 8.6e-09 65.1 43 69.8
arahy.Tifrunner.gnm1.ann1.BTFJ3K Arachis hypogaea HOM05D001758 ORTHO05D082785 8.6e-09 65.1 84 50.0
MCO01G139 Micromonas commoda HOM05D001758 ORTHO05D004430 1.5e-08 64.3 207 29.5
C03p35440 Brassica napus HOM05D001758 ORTHO05D000557 3.6e-07 59.7 118 42.4
CAN.G453.6 Capsicum annuum HOM05D001758 ORTHO05D018856 4.7e-07 59.3 92 44.6
BcaNung04479 Brassica carinata HOM05D001758 ORTHO05D017200 6.2e-07 58.9 32 87.5


User provided reference genes

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