Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR216260 Cardamine hirsuta HOM05D003452 ORTHO05D004046 3.8e-67 258.1 130 100.0
CARHR153780 Cardamine hirsuta HOM05D003452 ORTHO05D004046 3.3e-39 165.2 127 70.9
CARHR280390 Cardamine hirsuta HOM05D003452 ORTHO05D004046 1.7e-27 126.3 175 46.3
AT5G67240 Arabidopsis thaliana HOM05D003452 ORTHO05D004046 1.1e-26 123.6 175 45.1
Carub.0008s2727 Capsella rubella HOM05D003452 ORTHO05D004046 2.5e-26 122.5 175 44.0
BcaB02g09943 Brassica carinata HOM05D003452 ORTHO05D004046 9.4e-26 120.6 175 44.0
C07p24440 Brassica napus HOM05D001905 ORTHO05D001820 2.7e-25 119.0 175 42.9
Sp2g29430 Schrenkiella parvula HOM05D003452 ORTHO05D004046 3.6e-25 118.6 175 44.0
BolC7t42964H Brassica oleracea HOM05D001905 ORTHO05D001820 1.0e-24 117.1 180 41.7
BcaC06g34807 Brassica carinata HOM05D001905 ORTHO05D001820 2.3e-24 115.9 175 43.4
AL8G44100 Arabidopsis lyrata HOM05D003452 ORTHO05D004046 8.8e-24 114.0 175 42.3
Thhalv10003942m.g Eutrema salsugineum HOM05D003452 ORTHO05D004046 8.8e-24 114.0 175 42.9
A07p16710 Brassica napus HOM05D001905 ORTHO05D001820 2.8e-22 109.0 175 41.1
Aa31LG1G15770 Aethionema arabicum HOM05D003452 ORTHO05D004046 4.5e-20 101.7 175 37.1
Thhalv10011012m.g Eutrema salsugineum HOM05D003452 ORTHO05D004046 2.5e-18 95.9 175 35.4
THA.LOC104827394 Tarenaya hassleriana HOM05D003452 ORTHO05D004046 2.5e-18 95.9 175 36.6
THA.LOC104805170 Tarenaya hassleriana HOM05D003452 ORTHO05D004046 4.2e-18 95.1 175 36.0
BraA09t39792Z Brassica rapa HOM05D003452 ORTHO05D004046 7.2e-18 94.4 175 34.9
Thhalv10010950m.g Eutrema salsugineum HOM05D003452 ORTHO05D004046 2.1e-17 92.8 175 33.7
Cpa.g.sc55.98 Carica papaya HOM05D003452 ORTHO05D004046 3.6e-17 92.0 136 42.6
Sp5g12020 Schrenkiella parvula HOM05D003452 ORTHO05D004046 4.7e-17 91.7 175 35.4
AL5G30220 Arabidopsis lyrata HOM05D003452 ORTHO05D004046 6.1e-17 91.3 175 36.0
AT3G50090 Arabidopsis thaliana HOM05D003452 ORTHO05D004046 1.0e-16 90.5 156 38.5
AL5G30210 Arabidopsis lyrata HOM05D003452 ORTHO05D004046 1.4e-16 90.1 162 37.7
AT3G50100 Arabidopsis thaliana HOM05D003452 ORTHO05D004046 1.4e-16 90.1 175 34.9
BcaC09g50006 Brassica carinata HOM05D003452 ORTHO05D004046 1.8e-16 89.7 150 36.0
A09p43220 Brassica napus HOM05D003452 ORTHO05D004046 1.8e-16 89.7 175 33.1
A01p24270 Brassica napus HOM05D003452 ORTHO05D004046 3.0e-16 89.0 162 33.3
Thhalv10024938m.g Eutrema salsugineum HOM05D003452 ORTHO05D004046 3.0e-16 89.0 176 35.8
Sp7g29190 Schrenkiella parvula HOM05D003452 ORTHO05D004046 3.9e-16 88.6 180 37.2
BolC1t02953H Brassica oleracea HOM05D003452 ORTHO05D004046 5.2e-16 88.2 163 35.6
BcaC07g39477 Brassica carinata HOM05D003452 ORTHO05D004046 6.7e-16 87.8 175 32.6
BolC8t50143H Brassica oleracea HOM05D003452 ORTHO05D004046 6.7e-16 87.8 175 32.6
Sp7g29060 Schrenkiella parvula HOM05D003452 ORTHO05D004046 6.7e-16 87.8 176 35.2
BcaB01g00639 Brassica carinata HOM05D003452 ORTHO05D004046 2.6e-15 85.9 200 32.0
C08p25210 Brassica napus HOM05D003452 ORTHO05D004046 2.6e-15 85.9 173 32.4
AL6G15430 Arabidopsis lyrata HOM05D003452 ORTHO05D004046 5.7e-15 84.7 175 33.7
BraA01t02340Z Brassica rapa HOM05D003452 ORTHO05D004046 9.7e-15 84.0 175 30.9
BcaC09g50010 Brassica carinata HOM05D003452 ORTHO05D004046 1.7e-14 83.2 173 32.4
C01p30070 Brassica napus HOM05D003452 ORTHO05D004046 1.7e-14 83.2 173 32.4
BolC1t02949H Brassica oleracea HOM05D003452 ORTHO05D004046 1.7e-14 83.2 173 32.4
C01p30090 Brassica napus HOM05D003452 ORTHO05D004046 3.7e-14 82.0 179 31.8
AT5G05540 Arabidopsis thaliana HOM05D003452 ORTHO05D004046 4.8e-14 81.6 175 32.0
Carub.0005s1644 Capsella rubella HOM05D003452 ORTHO05D004046 6.3e-14 81.3 175 32.6
Carub.0006s0444 Capsella rubella HOM05D003452 ORTHO05D004046 6.3e-14 81.3 182 32.4
COL.COLO4_16245 Corchorus olitorius HOM05D003452 ORTHO05D004046 2.4e-13 79.3 130 37.7
Atru.chr3.258 Acer truncatum HOM05D003452 ORTHO05D004046 4.1e-13 78.6 178 32.6
CARHR207730 Cardamine hirsuta HOM05D003452 ORTHO05D004046 4.1e-13 78.6 175 32.0
QL05p089247 Quercus lobata HOM05D003452 ORTHO05D004046 7.0e-13 77.8 147 33.3
FAN26G1073 Fragaria x ananassa HOM05D003452 ORTHO05D004046 9.1e-13 77.4 148 34.5
PSO210G3568 Papaver somniferum HOM05D003452 ORTHO05D004046 9.1e-13 77.4 170 31.8
BraA07t29394Z Brassica rapa HOM05D001905 ORTHO05D001820 1.6e-12 76.6 74 55.4
FAN19G1474 Fragaria x ananassa HOM05D003452 ORTHO05D004046 2.6e-12 75.9 154 34.4
Gohir.A11G230304 Gossypium hirsutum HOM05D003452 ORTHO05D004046 2.6e-12 75.9 174 32.2
Gohir.D11G232800 Gossypium hirsutum HOM05D003452 ORTHO05D004046 2.6e-12 75.9 174 32.2
Gorai.003G066000 Gossypium raimondii HOM05D003452 ORTHO05D004046 2.6e-12 75.9 174 32.2
Dinv26859 Davidia involucrata HOM05D003452 ORTHO05D004046 3.5e-12 75.5 173 31.8
Manes.12G151100 Manihot esculenta HOM05D003452 ORTHO05D004046 3.5e-12 75.5 171 31.6
Medtr1g023955 Medicago truncatula HOM05D003452 ORTHO05D004046 3.5e-12 75.5 172 32.6
PSO170G4023 Papaver somniferum HOM05D003452 ORTHO05D004046 3.5e-12 75.5 170 31.2
FAN23G2911 Fragaria x ananassa HOM05D003452 ORTHO05D004046 4.5e-12 75.1 152 34.2
Lsat_1_v5_gn_3_90381 Lactuca sativa HOM05D003452 ORTHO05D004046 4.5e-12 75.1 149 32.9
Cfa004056 Carpinus fangiana HOM05D003452 ORTHO05D004046 7.7e-12 74.3 174 32.2
Cc07_g06390 Coffea canephora HOM05D003452 ORTHO05D004046 7.7e-12 74.3 174 31.6
FAN26G2566 Fragaria x ananassa HOM05D003452 ORTHO05D004046 7.7e-12 74.3 141 36.9
Oeu008437.1 Olea europaea HOM05D003452 ORTHO05D004046 1.3e-11 73.6 171 30.4
Rhsim10G0113000 Rhododendron simsii HOM05D003452 ORTHO05D004046 1.3e-11 73.6 133 33.8
TPR.G34364 Trifolium pratense HOM05D003452 ORTHO05D004046 1.3e-11 73.6 172 31.4
Ca_13403_v3 Cicer arietinum L. HOM05D003452 ORTHO05D004046 2.2e-11 72.8 171 32.2
BraA07t29398Z Brassica rapa HOM05D003452 ORTHO05D004046 2.9e-11 72.4 74 52.7
Aqoxy2G00584 Aquilegia oxysepala HOM05D003452 ORTHO05D004046 3.8e-11 72.0 170 31.8
Oeu049888.1 Olea europaea HOM05D003452 ORTHO05D004046 3.8e-11 72.0 171 31.0
Phvul.003G240600 Phaseolus vulgaris HOM05D003452 ORTHO05D004046 3.8e-11 72.0 166 32.5
QL12p009800 Quercus lobata HOM05D003452 ORTHO05D004046 3.8e-11 72.0 174 29.3
AUR62038246 Chenopodium quinoa HOM05D003452 ORTHO05D004046 5.0e-11 71.6 131 33.6
GSVIVG01000228001 Vitis vinifera HOM05D003452 ORTHO05D004046 5.0e-11 71.6 173 31.2
CiPaw.02G006400 Carya illinoinensis HOM05D003452 ORTHO05D004046 6.5e-11 71.2 174 30.5
Haze_15356 Corylus avellana HOM05D003452 ORTHO05D004046 6.5e-11 71.2 166 32.5
Lj4A155G89 Lonicera japonica HOM05D003452 ORTHO05D004046 6.5e-11 71.2 175 32.0
TWI73G0964 Tripterygium wilfordii HOM05D003452 ORTHO05D004046 6.5e-11 71.2 175 31.4
QL05p089141 Quercus lobata HOM05D003452 ORTHO05D004046 8.5e-11 70.9 127 33.1
Migut.H00401 Erythranthe guttata HOM05D003452 ORTHO05D004046 1.5e-10 70.1 171 30.4
Hma1.2p1_0017F.1_g011830 Hydrangea macrophylla HOM05D003452 ORTHO05D004046 1.5e-10 70.1 174 29.9
VMungo0251G0295 Vigna mungo HOM05D003452 ORTHO05D004046 1.5e-10 70.1 170 30.0
Lj1g0003061 Lotus japonicus HOM05D003452 ORTHO05D004046 2.5e-10 69.3 177 29.9
Lj5g0005600 Lotus japonicus HOM05D003452 ORTHO05D004046 2.5e-10 69.3 177 29.9
PSO447G0386 Papaver somniferum HOM05D003452 ORTHO05D004046 3.2e-10 68.9 168 29.2
Duzib147G1492 Durio zibethinus HOM05D003452 ORTHO05D004046 4.2e-10 68.6 171 32.2
Ca_13416_v3 Cicer arietinum L. HOM05D003452 ORTHO05D004046 5.5e-10 68.2 174 31.0
FvH4_1g16590 Fragaria vesca HOM05D003452 ORTHO05D004046 5.5e-10 68.2 174 30.5
Peaxi162Scf00472g00008 Petunia axillaris HOM05D003452 ORTHO05D004046 7.2e-10 67.8 177 29.4
Hund13910 Selenicereus undatus HOM05D003452 ORTHO05D004046 7.2e-10 67.8 189 28.6
Eucgr.I00803 Eucalyptus grandis HOM05D003452 ORTHO05D004046 9.4e-10 67.4 175 29.7
Lalb_Chr05g0226301 Lupinus albus HOM05D003452 ORTHO05D004046 9.4e-10 67.4 174 29.9
Prupe.6G230000 Prunus persica HOM05D003452 ORTHO05D004046 9.4e-10 67.4 172 30.2
CAN.G1778.2 Capsicum annuum HOM05D003452 ORTHO05D004046 1.2e-09 67.0 174 27.0
Glyma.17G167900 Glycine max HOM05D003452 ORTHO05D004046 1.2e-09 67.0 170 30.6
Thecc.01G062600 Theobroma cacao HOM05D003452 ORTHO05D004046 1.2e-09 67.0 171 31.6
PSO170G2906 Papaver somniferum HOM05D003452 ORTHO05D004046 1.6e-09 66.6 75 45.3
PSO700G0024 Papaver somniferum HOM05D003452 ORTHO05D004046 1.6e-09 66.6 168 28.6
Aqoxy6G02896 Aquilegia oxysepala HOM05D003452 ORTHO05D004046 2.1e-09 66.2 166 28.3
DCAR_010856 Daucus carota HOM05D003452 ORTHO05D004046 2.1e-09 66.2 169 30.2
Lj7A76T78 Lonicera japonica HOM05D003452 ORTHO05D004046 2.1e-09 66.2 173 31.2
Lj7A83T65 Lonicera japonica HOM05D003452 ORTHO05D004046 2.1e-09 66.2 173 31.2
PSO210G5185 Papaver somniferum HOM05D003452 ORTHO05D004046 2.1e-09 66.2 160 29.4
Potri.007G048000 Populus trichocarpa HOM05D003452 ORTHO05D004046 2.1e-09 66.2 167 31.7
Nn5g30393 Nelumbo nucifera HOM05D003452 ORTHO05D004046 3.6e-09 65.5 178 30.3
Psat6g004200 Pisum sativum HOM05D003452 ORTHO05D004046 3.6e-09 65.5 170 29.4
vmacro05258 Vaccinium macrocarpon HOM05D003452 ORTHO05D004046 3.6e-09 65.5 181 26.5
Lsat_1_v5_gn_3_90320 Lactuca sativa HOM05D003452 ORTHO05D004046 4.7e-09 65.1 105 39.0
Sabra07G0043000 Salix brachista HOM05D003452 ORTHO05D004046 4.7e-09 65.1 167 31.7
CSS0049847 Camellia sinensis var. sinensis HOM05D003452 ORTHO05D004046 6.1e-09 64.7 174 28.7
HanXRQChr11g0348391 Helianthus annuus HOM05D003452 ORTHO05D004046 6.1e-09 64.7 177 29.9
Actinidia36467 Actinidia chinensis HOM05D003452 ORTHO05D004046 8.0e-09 64.3 174 28.7
PGR004G0567 Punica granatum HOM05D003452 ORTHO05D004046 8.0e-09 64.3 174 29.3
PSO210G6200 Papaver somniferum HOM05D003452 ORTHO05D004046 1.0e-08 63.9 160 31.2
CSS0011108 Camellia sinensis var. sinensis HOM05D003452 ORTHO05D004046 1.4e-08 63.5 166 28.9
CARHR239210 Cardamine hirsuta HOM05D003452 ORTHO05D004046 1.4e-08 63.5 179 30.7
Nitab4.5_0001297g0030 Nicotiana tabacum HOM05D003452 ORTHO05D004046 1.4e-08 63.5 169 26.0
RcHm_v2.0_Chr2g0106501 Rosa chinensis HOM05D003452 ORTHO05D004046 1.4e-08 63.5 172 30.8
Nitab4.5_0001192g0060 Nicotiana tabacum HOM05D003452 ORTHO05D004046 1.8e-08 63.2 169 27.2
TAR381G1138 Trochodendron aralioides HOM05D003452 ORTHO05D004046 1.8e-08 63.2 176 31.2
Sopen10g033610 Solanum pennellii HOM05D003452 ORTHO05D004046 2.3e-08 62.8 170 28.8
Lalb_Chr16g0378691 Lupinus albus HOM05D003452 ORTHO05D004046 3.0e-08 62.4 174 28.7
BcaB05g23189 Brassica carinata HOM05D003452 ORTHO05D004046 4.0e-08 62.0 140 28.6
CAN.G1778.3 Capsicum annuum HOM05D003452 ORTHO05D004046 5.2e-08 61.6 172 26.7
FvH4_4g28290 Fragaria vesca HOM05D003452 ORTHO05D004046 5.2e-08 61.6 128 37.5
FAN12G4129 Fragaria x ananassa HOM05D003452 ORTHO05D004046 5.2e-08 61.6 128 37.5
MD15G1287900 Malus domestica HOM05D003452 ORTHO05D004046 6.7e-08 61.2 174 28.7
Actinidia12025 Actinidia chinensis HOM05D003452 ORTHO05D004046 1.2e-07 60.5 174 27.6
MD02G1178000 Malus domestica HOM05D003452 ORTHO05D004046 1.5e-07 60.1 174 28.2
PGSC0003DMG400010461 Solanum tuberosum HOM05D003452 ORTHO05D004046 1.5e-07 60.1 170 26.5
SGA_v2.0_scaffold15G07361 Striga asiatica HOM05D003452 ORTHO05D004046 1.5e-07 60.1 173 27.7
MSTRG.2860 Avicennia marina HOM05D003452 ORTHO05D004046 2.0e-07 59.7 169 26.0
ECA246G2207 Erigeron canadensis HOM05D003452 ORTHO05D004046 2.0e-07 59.7 172 28.5
Solyc10g084160.2 Solanum lycopersicum HOM05D003452 ORTHO05D004046 2.0e-07 59.7 170 27.6
AUR62003930 Chenopodium quinoa HOM05D003452 ORTHO05D004046 2.6e-07 59.3 194 25.3
Ciclev10025436m.g Citrus clementina HOM05D003452 ORTHO05D004046 3.3e-07 58.9 172 27.9
Lalb_Chr09g0323371 Lupinus albus HOM05D003452 ORTHO05D004046 4.4e-07 58.5 174 29.3
HPP92_021980 Vanilla planifolia HOM05D003452 ORTHO05D004046 5.7e-07 58.2 166 28.9
Os04g0650600 Oryza sativa ssp. japonica HOM05D003452 ORTHO05D004046 1.7e-06 56.6 166 30.1
Sed0010356 Sechium edule HOM05D003452 ORTHO05D004046 2.2e-06 56.2 174 25.9
Sc18g0004770 Simmondsia chinensis HOM05D003452 ORTHO05D004046 2.8e-06 55.8 167 28.7
AL6G18830 Arabidopsis lyrata HOM05D003452 ORTHO05D004046 6.3e-06 54.7 69 43.5
CARHR112890 Cardamine hirsuta HOM05D003452 ORTHO05D004046 6.3e-06 54.7 60 51.7


User provided reference genes

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