Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR194880 Cardamine hirsuta HOM05D004151 ORTHO05D004775 4.0e-87 325.1 210 100.0
Thhalv10014755m.g Eutrema salsugineum HOM05D004151 ORTHO05D004775 1.6e-59 233.4 148 83.8
Sp6g26140 Schrenkiella parvula HOM05D004151 ORTHO05D004775 1.0e-58 230.7 156 86.5
A03p08690 Brassica napus HOM05D004151 ORTHO05D004775 1.5e-57 226.9 168 79.8
BcaC03g13582 Brassica carinata HOM05D004151 ORTHO05D004775 3.3e-57 225.7 165 82.4
BolC2t06882H Brassica oleracea HOM05D004151 ORTHO05D004775 3.3e-57 225.7 165 82.4
AL6G29380 Arabidopsis lyrata HOM05D004151 ORTHO05D004775 1.3e-56 223.8 157 82.8
C02p09730 Brassica napus HOM05D004151 ORTHO05D004775 3.6e-56 222.2 165 81.8
Sp3g02890 Schrenkiella parvula HOM05D004151 ORTHO05D004775 1.5e-54 216.9 150 88.0
AT5G18180 Arabidopsis thaliana HOM05D004151 ORTHO05D004775 2.0e-54 216.5 198 73.2
Ah.06g191800 Amaranthus hybridus HOM05D004151 ORTHO05D004775 5.8e-54 214.9 154 81.8
A01p41270 Brassica napus HOM05D004151 ORTHO05D004775 5.8e-54 214.9 165 80.6
BNapus_Darmor_BZH_scaffold_78p00440 Brassica napus HOM05D004151 ORTHO05D004775 5.8e-54 214.9 165 80.6
BolC3t13499H Brassica oleracea HOM05D004151 ORTHO05D004775 5.8e-54 214.9 167 77.2
BraA01t04550Z Brassica rapa HOM05D004151 ORTHO05D004775 7.6e-54 214.5 165 80.6
BolC1t05799H Brassica oleracea HOM05D004151 ORTHO05D004775 1.3e-53 213.8 170 80.6
CARHR078040 Cardamine hirsuta HOM05D004151 ORTHO05D004775 1.7e-53 213.4 166 75.9
Thhalv10021561m.g Eutrema salsugineum HOM05D004151 ORTHO05D004775 1.7e-53 213.4 151 87.4
Carub.0006s1646 Capsella rubella HOM05D004151 ORTHO05D004775 2.2e-53 213.0 194 79.4
BcaNung05743 Brassica carinata HOM05D004151 ORTHO05D004775 2.9e-53 212.6 166 80.1
Sed0025621 Sechium edule HOM05D004151 ORTHO05D004775 2.9e-53 212.6 168 80.4
BraA02t05436Z Brassica rapa HOM05D004151 ORTHO05D004775 3.8e-53 212.2 166 75.3
BcaB01g05179 Brassica carinata HOM05D004151 ORTHO05D004775 4.9e-53 211.8 167 76.6
C03p10140 Brassica napus HOM05D004151 ORTHO05D004775 4.9e-53 211.8 167 76.6
BraA03t10192Z Brassica rapa HOM05D004151 ORTHO05D004775 4.9e-53 211.8 167 76.6
RcHm_v2.0_Chr3g0490211 Rosa chinensis HOM05D004151 ORTHO05D004775 4.9e-53 211.8 162 79.0
Ah.13g075350 Amaranthus hybridus HOM05D004151 ORTHO05D004775 6.4e-53 211.5 156 82.7
THA.LOC104827273 Tarenaya hassleriana HOM05D004151 ORTHO05D004775 6.4e-53 211.5 152 84.2
AT3G03920 Arabidopsis thaliana HOM05D004151 ORTHO05D004775 1.1e-52 210.7 203 72.4
BcaB05g23300 Brassica carinata HOM05D004151 ORTHO05D004775 1.1e-52 210.7 162 79.6
Atru.chr5.2062 Acer truncatum HOM05D004151 ORTHO05D004775 1.4e-52 210.3 183 71.6
A02p04770 Brassica napus HOM05D004151 ORTHO05D004775 1.4e-52 210.3 165 75.8
Sabra13G0051900 Salix brachista HOM05D004151 ORTHO05D004775 1.4e-52 210.3 158 83.5
PGR142G1491 Punica granatum HOM05D004151 ORTHO05D004775 3.2e-52 209.1 145 87.6
Sc25g0004980 Simmondsia chinensis HOM05D004151 ORTHO05D004775 3.2e-52 209.1 154 77.3
AL3G13810 Arabidopsis lyrata HOM05D004151 ORTHO05D004775 4.2e-52 208.8 156 84.6
FvH4_1g30320 Fragaria vesca HOM05D004151 ORTHO05D004775 4.2e-52 208.8 160 78.8
FAN19G1796 Fragaria x ananassa HOM05D004151 ORTHO05D004775 4.2e-52 208.8 160 80.6
FAN26G2823 Fragaria x ananassa HOM05D004151 ORTHO05D004775 4.2e-52 208.8 160 80.6
Sed0023399 Sechium edule HOM05D004151 ORTHO05D004775 5.4e-52 208.4 153 84.3
FAN23G0170 Fragaria x ananassa HOM05D004151 ORTHO05D004775 9.3e-52 207.6 160 80.6
BcaNung05745 Brassica carinata HOM05D004151 ORTHO05D004775 1.2e-51 207.2 165 81.2
PSO063G0165 Papaver somniferum HOM05D004151 ORTHO05D004775 1.6e-51 206.8 155 80.6
Atru.chr5.2060 Acer truncatum HOM05D004151 ORTHO05D004775 2.1e-51 206.5 183 71.0
Thecc.05G294500 Theobroma cacao HOM05D004151 ORTHO05D004775 2.1e-51 206.5 150 86.0
Aa31LG11G11430 Aethionema arabicum HOM05D004151 ORTHO05D004775 2.7e-51 206.1 168 79.8
Peaxi162Scf00003g04832 Petunia axillaris HOM05D004151 ORTHO05D004775 2.7e-51 206.1 158 71.5
Nn7g35851 Nelumbo nucifera HOM05D004151 ORTHO05D004775 3.5e-51 205.7 147 83.0
PSO384G0229 Papaver somniferum HOM05D004151 ORTHO05D004775 3.5e-51 205.7 147 84.4
TPR.G5895 Trifolium pratense HOM05D004151 ORTHO05D004775 3.5e-51 205.7 175 77.1
TWI32G1207 Tripterygium wilfordii HOM05D004151 ORTHO05D004775 3.5e-51 205.7 175 76.6
TAR369G0512 Trochodendron aralioides HOM05D004151 ORTHO05D004775 3.5e-51 205.7 160 83.1
ClCG04G005310 Citrullus lanatus HOM05D004151 ORTHO05D004775 6.0e-51 204.9 149 84.6
Gohir.A08G213200 Gossypium hirsutum HOM05D004151 ORTHO05D004775 6.0e-51 204.9 143 87.4
Gorai.004G244500 Gossypium raimondii HOM05D004151 ORTHO05D004775 6.0e-51 204.9 143 87.4
Oeu059999.1 Olea europaea HOM05D004151 ORTHO05D004775 1.0e-50 204.1 178 69.7
PSO339G5713 Papaver somniferum HOM05D004151 ORTHO05D004775 1.0e-50 204.1 143 86.0
Psat0s1971g0280 Pisum sativum HOM05D004151 ORTHO05D004775 1.0e-50 204.1 178 75.8
Manes.08G144000 Manihot esculenta HOM05D004151 ORTHO05D004775 1.3e-50 203.8 151 82.8
Cc06_g22960 Coffea canephora HOM05D004151 ORTHO05D004775 1.7e-50 203.4 161 77.6
PGSC0003DMG400008366 Solanum tuberosum HOM05D004151 ORTHO05D004775 1.7e-50 203.4 162 77.2
Gohir.A11G296500 Gossypium hirsutum HOM05D004151 ORTHO05D004775 2.3e-50 203.0 143 86.7
Gohir.D08G230300 Gossypium hirsutum HOM05D004151 ORTHO05D004775 2.3e-50 203.0 143 86.7
SEGI_32651 Sequoiadendron giganteum HOM05D004151 ORTHO05D004775 2.3e-50 203.0 160 75.6
Solyc10g078540.3 Solanum lycopersicum HOM05D004151 ORTHO05D004775 2.3e-50 203.0 160 76.2
Sopen10g029190 Solanum pennellii HOM05D004151 ORTHO05D004775 2.3e-50 203.0 160 76.2
MD00G1189600 Malus domestica HOM05D004151 ORTHO05D004775 3.0e-50 202.6 154 71.4
MD05G1045500 Malus domestica HOM05D004151 ORTHO05D004775 3.0e-50 202.6 154 76.0
MELO3C008801.2 Cucumis melo HOM05D004151 ORTHO05D004775 3.9e-50 202.2 164 80.5
CsaV3_4G013280 Cucumis sativus L. HOM05D004151 ORTHO05D004775 3.9e-50 202.2 164 75.0
Migut.J01888 Erythranthe guttata HOM05D004151 ORTHO05D004775 3.9e-50 202.2 151 82.1
Glyma.16G041400 Glycine max HOM05D004151 ORTHO05D004775 3.9e-50 202.2 163 76.1
Prupe.8G064800 Prunus persica HOM05D004151 ORTHO05D004775 3.9e-50 202.2 153 82.4
Gohir.D11G310400 Gossypium hirsutum HOM05D004151 ORTHO05D004775 5.1e-50 201.8 143 86.0
Gorai.007G343400 Gossypium raimondii HOM05D004151 ORTHO05D004775 5.1e-50 201.8 143 86.0
Nitab4.5_0009048g0010 Nicotiana tabacum HOM05D004151 ORTHO05D004775 5.1e-50 201.8 153 77.1
Os11g0579800 Oryza sativa ssp. japonica HOM05D004151 ORTHO05D004775 5.1e-50 201.8 160 72.5
unitig_21.g20195 Utricularia gibba HOM05D004151 ORTHO05D004775 5.1e-50 201.8 160 78.8
Aqoxy1G00486 Aquilegia oxysepala HOM05D004151 ORTHO05D004775 6.6e-50 201.4 149 85.2
Duzib106G1401 Durio zibethinus HOM05D004151 ORTHO05D004775 6.6e-50 201.4 150 82.7
TWI34G0161 Tripterygium wilfordii HOM05D004151 ORTHO05D004775 6.6e-50 201.4 165 75.2
Aa31LG5G14500 Aethionema arabicum HOM05D004151 ORTHO05D004775 8.7e-50 201.1 177 76.8
FAN28G2413 Fragaria x ananassa HOM05D004151 ORTHO05D004775 8.7e-50 201.1 142 81.7
PSO782G4796 Papaver somniferum HOM05D004151 ORTHO05D004775 1.1e-49 200.7 155 77.4
arahy.Tifrunner.gnm1.ann1.JDMG7B Arachis hypogaea HOM05D004151 ORTHO05D004775 1.9e-49 199.9 147 85.0
arahy.Tifrunner.gnm1.ann1.PLSY77 Arachis hypogaea HOM05D004151 ORTHO05D004775 1.9e-49 199.9 147 85.0
Haze_19418 Corylus avellana HOM05D004151 ORTHO05D004775 1.9e-49 199.9 155 77.4
Haze_19447 Corylus avellana HOM05D004151 ORTHO05D004775 1.9e-49 199.9 155 77.4
Dinv37014 Davidia involucrata HOM05D004151 ORTHO05D004775 1.9e-49 199.9 157 75.8
Duzib177G0709 Durio zibethinus HOM05D004151 ORTHO05D004775 1.9e-49 199.9 151 83.4
SalBow5G4201 Salvia bowleyana HOM05D004151 ORTHO05D004775 1.9e-49 199.9 141 80.9
THA.LOC104802867 Tarenaya hassleriana HOM05D004151 ORTHO05D004775 1.9e-49 199.9 149 82.6
VMungo1383G2477 Vigna mungo HOM05D004151 ORTHO05D004775 1.9e-49 199.9 152 82.2
SGA_v2.0_scaffold274G46513 Striga asiatica HOM05D004151 ORTHO05D004775 2.5e-49 199.5 162 76.5
Cfa016441 Carpinus fangiana HOM05D004151 ORTHO05D004775 3.3e-49 199.1 183 69.9
Lalb_Chr14g0364491 Lupinus albus HOM05D004151 ORTHO05D004775 4.3e-49 198.7 165 73.9
Lalb_Chr22g0359191 Lupinus albus HOM05D004151 ORTHO05D004775 4.3e-49 198.7 173 75.1
GSVIVG01033401001 Vitis vinifera HOM05D004151 ORTHO05D004775 4.3e-49 198.7 189 62.4
Lj1g0021266 Lotus japonicus HOM05D004151 ORTHO05D004775 5.6e-49 198.4 178 74.7
Manes.09G141400 Manihot esculenta HOM05D004151 ORTHO05D004775 5.6e-49 198.4 151 82.1
Nitab4.5_0007542g0010 Nicotiana tabacum HOM05D004151 ORTHO05D004775 5.6e-49 198.4 153 73.2
Medtr7g085640 Medicago truncatula HOM05D004151 ORTHO05D004775 7.3e-49 198.0 134 76.1
QL07p019530 Quercus lobata HOM05D004151 ORTHO05D004775 1.3e-48 197.2 159 79.9
Carub.0003s0316 Capsella rubella HOM05D004151 ORTHO05D004775 1.6e-48 196.8 200 69.5
Glyma.19G110900 Glycine max HOM05D004151 ORTHO05D004775 1.6e-48 196.8 163 73.6
EL10Ac3g06820 Beta vulgaris HOM05D004151 ORTHO05D004775 2.1e-48 196.4 150 79.3
ECA233G5487 Erigeron canadensis HOM05D004151 ORTHO05D004775 2.8e-48 196.1 168 77.4
Hma1.2p1_0134F.1_g061640 Hydrangea macrophylla HOM05D004151 ORTHO05D004775 3.6e-48 195.7 159 78.0
HanXRQChr08g0216931 Helianthus annuus HOM05D004151 ORTHO05D004775 4.8e-48 195.3 181 72.4
MSTRG.19934 Avicennia marina HOM05D004151 ORTHO05D004775 8.1e-48 194.5 152 79.6
CDE06G0359 Ceratophyllum demersum HOM05D004151 ORTHO05D004775 8.1e-48 194.5 154 74.7
HanXRQChr07g0204461 Helianthus annuus HOM05D004151 ORTHO05D004775 8.1e-48 194.5 148 80.4
Hund24835 Selenicereus undatus HOM05D004151 ORTHO05D004775 8.1e-48 194.5 151 78.1
CANSAT78G0749 Cannabis sativa HOM05D004151 ORTHO05D004775 1.1e-47 194.1 180 73.9
HPP92_021240 Vanilla planifolia HOM05D004151 ORTHO05D004775 1.1e-47 194.1 177 73.4
ATR0697G007 Amborella trichopoda HOM05D004151 ORTHO05D004775 1.8e-47 193.4 140 83.6
AUR62032690 Chenopodium quinoa HOM05D004151 ORTHO05D004775 1.8e-47 193.4 146 81.5
Dinv14579 Davidia involucrata HOM05D004151 ORTHO05D004775 1.8e-47 193.4 181 69.1
Lsat_1_v5_gn_8_145841 Lactuca sativa HOM05D004151 ORTHO05D004775 3.1e-47 192.6 155 78.7
Phvul.001G110400 Phaseolus vulgaris HOM05D004151 ORTHO05D004775 3.1e-47 192.6 170 74.7
Potri.013G058400 Populus trichocarpa HOM05D004151 ORTHO05D004775 3.1e-47 192.6 161 77.0
COL.COLO4_13597 Corchorus olitorius HOM05D004151 ORTHO05D004775 4.0e-47 192.2 142 83.1
Lsat_1_v5_gn_8_24760 Lactuca sativa HOM05D004151 ORTHO05D004775 5.3e-47 191.8 154 80.5
CiPaw.09G001900 Carya illinoinensis HOM05D004151 ORTHO05D004775 6.9e-47 191.4 153 76.5
Zm00001eb200450 Zea mays HOM05D004151 ORTHO05D004775 6.9e-47 191.4 148 80.4
Potri.019G034900 Populus trichocarpa HOM05D004151 ORTHO05D004775 3.4e-46 189.1 163 76.7
Sabra19G0042500 Salix brachista HOM05D004151 ORTHO05D004775 4.5e-46 188.7 143 84.6
Sabra19G0044800 Salix brachista HOM05D004151 ORTHO05D004775 4.5e-46 188.7 143 84.6
Oeu049600.1 Olea europaea HOM05D004151 ORTHO05D004775 1.7e-45 186.8 189 69.8
Actinidia22083 Actinidia chinensis HOM05D004151 ORTHO05D004775 4.9e-45 185.3 143 80.4
AagrBONN_evm.TU.Sc2ySwM_362.2901 Anthoceros agrestis HOM05D004151 ORTHO05D004775 4.9e-45 185.3 158 70.3
Pp3c25_15020 Physcomitrium patens HOM05D004151 ORTHO05D004775 1.4e-44 183.7 151 75.5
Pp3c5_28430 Physcomitrium patens HOM05D004151 ORTHO05D004775 1.4e-44 183.7 151 74.8
vmacro09141 Vaccinium macrocarpon HOM05D004151 ORTHO05D004775 1.2e-43 180.6 156 72.4
CSS0045523 Camellia sinensis var. sinensis HOM05D004151 ORTHO05D004775 1.6e-43 180.3 184 66.8
Rhsim04G0087500 Rhododendron simsii HOM05D004151 ORTHO05D004775 3.5e-43 179.1 150 76.0
Mapoly0086s0024 Marchantia polymorpha HOM05D004151 ORTHO05D004775 7.9e-43 177.9 106 76.4
CBR_g48747 Chara braunii HOM05D004151 ORTHO05D004775 2.3e-42 176.4 106 76.4
Peaxi162Scf00076g01048 Petunia axillaris HOM05D004151 ORTHO05D004775 2.3e-42 176.4 152 73.7
Zm00001eb114360 Zea mays HOM05D004151 ORTHO05D004775 3.9e-42 175.6 201 63.2
COL.COLO4_13598 Corchorus olitorius HOM05D004151 ORTHO05D004775 1.1e-41 174.1 149 77.9
Cpa.g.sc51.114 Carica papaya HOM05D004151 ORTHO05D004775 1.5e-41 173.7 91 87.9
Cre13.g567850 Chlamydomonas reinhardtii HOM05D004151 ORTHO05D004775 1.3e-40 170.6 160 66.9
CAN.G960.49 Capsicum annuum HOM05D004151 ORTHO05D004775 2.1e-40 169.9 105 81.0
Nitab4.5_0002769g0090 Nicotiana tabacum HOM05D004151 ORTHO05D004775 6.2e-40 168.3 158 70.3
Ca_08267_v3 Cicer arietinum L. HOM05D004151 ORTHO05D004775 1.1e-39 167.5 87 88.5
Nitab4.5_0004844g0050 Nicotiana tabacum HOM05D004151 ORTHO05D004775 1.8e-39 166.8 89 85.4
Hund19236 Selenicereus undatus HOM05D004151 ORTHO05D004775 2.9e-37 159.5 113 71.7
MBI11_g31283_MAGBIO Magnolia biondii HOM05D004151 ORTHO05D004775 1.3e-34 150.6 115 72.2
BolC2t11912H Brassica oleracea HOM05D004151 ORTHO05D004775 2.3e-34 149.8 126 65.1
MCO13G219 Micromonas commoda HOM05D004151 ORTHO05D004775 5.1e-34 148.7 103 64.1
SMO347G0554 Selaginella moellendorffii HOM05D004151 ORTHO05D004775 1.5e-33 147.1 155 69.0
C09p58800 Brassica napus HOM05D004151 ORTHO05D004775 2.8e-32 142.9 80 81.2
BraA10t42874Z Brassica rapa HOM05D004151 ORTHO05D004775 2.1e-27 126.7 129 59.7
unitig_744.g24550 Utricularia gibba HOM05D004151 ORTHO05D004775 7.9e-27 124.8 69 88.4
PRCOL_00005119 Prasinoderma coloniale HOM05D005848 ORTHO05D007532 1.6e-24 117.1 76 64.5
C02p58510 Brassica napus HOM05D004151 ORTHO05D004775 1.4e-23 114.0 92 64.1
Actinidia30553 Actinidia chinensis HOM05D004151 ORTHO05D004775 4.5e-22 109.0 59 86.4
Haze_27090 Corylus avellana HOM05D000590 ORTHO05D004775 1.4e-20 104.0 114 47.4
Zm00001eb274230 Zea mays HOM05D004151 ORTHO05D004775 5.1e-18 95.5 50 82.0
Oeu035726.1 Olea europaea HOM05D004151 ORTHO05D004775 3.3e-17 92.8 102 52.9
Oeu035720.1 Olea europaea HOM05D004151 ORTHO05D004775 7.4e-17 91.7 103 51.5
HanXRQChr05g0143841 Helianthus annuus HOM05D004151 ORTHO05D004775 1.3e-16 90.9 150 48.7
BolC9t58722H Brassica oleracea HOM05D004151 ORTHO05D004775 1.0e-13 81.3 159 49.7
Atru.chr6.7 Acer truncatum HOM05D004151 ORTHO05D004775 3.8e-13 79.3 53 75.5
Atru.chr10.1764 Acer truncatum HOM05D004151 ORTHO05D004775 8.5e-13 78.2 53 75.5
Atru.chr5.2304 Acer truncatum HOM05D004151 ORTHO05D004775 8.5e-13 78.2 53 75.5
Atru.chr13.534 Acer truncatum HOM05D004151 ORTHO05D004775 7.2e-12 75.1 53 73.6
Atru.chr2.3197 Acer truncatum HOM05D004151 ORTHO05D004775 7.2e-12 75.1 53 73.6
Atru.chr4.2011 Acer truncatum HOM05D004151 ORTHO05D004775 7.2e-12 75.1 53 73.6
BcaB08g36698 Brassica carinata HOM05D004151 ORTHO05D004775 1.8e-10 70.5 57 68.4
ECA246G0128 Erigeron canadensis HOM05D001659 ORTHO05D001659 2.4e-07 60.1 38 71.1


User provided reference genes

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