Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR169370 Cardamine hirsuta HOM05D004152 ORTHO05D004878 7.7e-141 503.8 257 100.0
AT3G58990 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 1.4e-121 439.9 253 88.5
AL5G40810 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 5.7e-120 434.5 258 88.0
Aa31LG10G13480 Aethionema arabicum HOM05D004152 ORTHO05D004878 1.9e-115 419.5 253 85.4
Carub.0002s0595 Capsella rubella HOM05D004152 ORTHO05D004878 1.9e-115 419.5 259 84.9
Carub.0005s2573 Capsella rubella HOM05D004152 ORTHO05D004878 4.4e-112 408.3 261 81.2
Carub.0004s2557 Capsella rubella HOM05D004152 ORTHO05D004878 1.6e-98 363.2 259 73.0
AL4G41740 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 6.1e-98 361.3 258 72.5
AT2G43090 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 1.8e-97 359.8 258 72.5
Sp4g25220 Schrenkiella parvula HOM05D004152 ORTHO05D004878 1.7e-95 353.2 257 70.8
CARHR138160 Cardamine hirsuta HOM05D004152 ORTHO05D004878 3.7e-95 352.1 258 70.2
Thhalv10017142m.g Eutrema salsugineum HOM05D004152 ORTHO05D004878 1.1e-94 350.5 257 70.4
A03p23950 Brassica napus HOM05D004152 ORTHO05D004878 1.2e-93 347.1 255 72.2
C03p28570 Brassica napus HOM05D004152 ORTHO05D004878 1.6e-93 346.7 256 71.1
BolC3t15222H Brassica oleracea HOM05D004152 ORTHO05D004878 2.7e-93 345.9 256 71.1
BraA03t11610Z Brassica rapa HOM05D004152 ORTHO05D004878 3.5e-93 345.5 257 71.6
BcaC02g12415 Brassica carinata HOM05D004152 ORTHO05D004878 6.6e-92 341.3 260 68.1
BolC4t22054H Brassica oleracea HOM05D004152 ORTHO05D004878 2.5e-91 339.3 260 67.7
BraA05t19344Z Brassica rapa HOM05D004152 ORTHO05D004878 9.5e-91 337.4 254 68.9
THA.LOC104824129 Tarenaya hassleriana HOM05D004152 ORTHO05D004878 4.7e-90 335.1 257 70.0
CARHR169410 Cardamine hirsuta HOM05D004152 ORTHO05D004878 2.0e-88 329.7 255 69.4
BcaNung03538 Brassica carinata HOM05D004152 ORTHO05D004878 2.9e-87 325.9 261 65.5
THA.LOC104803472 Tarenaya hassleriana HOM05D004152 ORTHO05D004878 2.7e-85 319.3 257 66.9
Aa31LG1G24900 Aethionema arabicum HOM05D004152 ORTHO05D004878 1.7e-84 316.6 241 68.0
CARHR138170 Cardamine hirsuta HOM05D004152 ORTHO05D004878 5.0e-84 315.1 256 65.6
Aqoxy7G00694 Aquilegia oxysepala HOM05D004152 ORTHO05D004878 2.1e-82 309.7 253 64.8
COL.COLO4_08312 Corchorus olitorius HOM05D004152 ORTHO05D004878 6.2e-82 308.1 252 67.5
Gorai.012G137200 Gossypium raimondii HOM05D004152 ORTHO05D004878 1.4e-81 307.0 261 63.6
Cpa.g.sc29.188 Carica papaya HOM05D004152 ORTHO05D004878 3.1e-81 305.8 246 65.4
Gohir.A04G110300 Gossypium hirsutum HOM05D004152 ORTHO05D004878 3.1e-81 305.8 261 64.4
Sp4g25230 Schrenkiella parvula HOM05D004152 ORTHO05D004878 3.1e-81 305.8 259 66.0
Duzib052G0353 Durio zibethinus HOM05D004152 ORTHO05D004878 4.0e-81 305.4 249 65.5
QL12p011587 Quercus lobata HOM05D004152 ORTHO05D004878 4.0e-81 305.4 253 65.2
TWI81G0703 Tripterygium wilfordii HOM05D004152 ORTHO05D004878 4.0e-81 305.4 229 67.7
BcaNung03539 Brassica carinata HOM05D004152 ORTHO05D004878 8.9e-81 304.3 263 64.3
AL4G41750 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 1.2e-80 303.9 258 63.6
Gohir.D04G150500 Gossypium hirsutum HOM05D004152 ORTHO05D004878 1.2e-80 303.9 261 62.8
Gohir.D04G150600 Gossypium hirsutum HOM05D004152 ORTHO05D004878 1.2e-80 303.9 261 62.8
Thecc.02G150400 Theobroma cacao HOM05D004152 ORTHO05D004878 1.2e-80 303.9 257 64.6
Aqoxy7G00850 Aquilegia oxysepala HOM05D004152 ORTHO05D004878 2.0e-80 303.1 240 65.4
AT2G43100 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 2.0e-80 303.1 241 66.8
Aa31LG1G24910 Aethionema arabicum HOM05D004152 ORTHO05D004878 2.6e-80 302.8 257 63.4
CANSAT21G2552 Cannabis sativa HOM05D004152 ORTHO05D004878 3.4e-80 302.4 256 63.7
PGR031G2826 Punica granatum HOM05D004152 ORTHO05D004878 3.4e-80 302.4 253 64.8
ClCG01G004210 Citrullus lanatus HOM05D004152 ORTHO05D004878 4.4e-80 302.0 261 66.3
HanXRQChr03g0088791 Helianthus annuus HOM05D004152 ORTHO05D004878 9.8e-80 300.8 255 64.3
ECA240G2077 Erigeron canadensis HOM05D004152 ORTHO05D004878 1.3e-79 300.4 223 68.2
Solyc06g060790.1 Solanum lycopersicum HOM05D004152 ORTHO05D004878 1.3e-79 300.4 246 64.6
Lj2C222T2 Lonicera japonica HOM05D004152 ORTHO05D004878 1.7e-79 300.1 254 62.2
Nitab4.5_0002881g0050 Nicotiana tabacum HOM05D004152 ORTHO05D004878 1.7e-79 300.1 214 71.5
Gorai.005G214700 Gossypium raimondii HOM05D004152 ORTHO05D004878 2.9e-79 299.3 241 65.1
BcaB01g01073 Brassica carinata HOM05D004152 ORTHO05D004878 3.7e-79 298.9 225 66.2
Thhalv10017125m.g Eutrema salsugineum HOM05D004152 ORTHO05D004878 3.7e-79 298.9 259 63.3
TWI60G0584 Tripterygium wilfordii HOM05D004152 ORTHO05D004878 3.7e-79 298.9 228 68.0
Nitab4.5_0000618g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 4.9e-79 298.5 259 63.3
Sopen06g020930 Solanum pennellii HOM05D004152 ORTHO05D004878 4.9e-79 298.5 245 64.1
BcaC02g12414 Brassica carinata HOM05D004152 ORTHO05D004878 6.4e-79 298.1 265 63.8
A05p03590 Brassica napus HOM05D004152 ORTHO05D004878 8.3e-79 297.7 264 61.7
C04p04150 Brassica napus HOM05D004152 ORTHO05D004878 1.1e-78 297.4 265 63.4
BolC4t22055H Brassica oleracea HOM05D004152 ORTHO05D004878 1.1e-78 297.4 265 63.4
MELO3C005518.2 Cucumis melo HOM05D004152 ORTHO05D004878 1.1e-78 297.4 206 75.7
BraA05t19345Z Brassica rapa HOM05D004152 ORTHO05D004878 1.4e-78 297.0 264 61.4
PGSC0003DMG400024154 Solanum tuberosum HOM05D004152 ORTHO05D004878 1.4e-78 297.0 246 63.4
VMungo0331G1163 Vigna mungo HOM05D004152 ORTHO05D004878 1.4e-78 297.0 207 72.0
MD04G1062100 Malus domestica HOM05D004152 ORTHO05D004878 1.9e-78 296.6 250 65.6
arahy.Tifrunner.gnm1.ann1.HAI1EF Arachis hypogaea HOM05D004152 ORTHO05D004878 2.4e-78 296.2 249 65.1
Haze_18794 Corylus avellana HOM05D004152 ORTHO05D004878 2.4e-78 296.2 246 65.9
HanXRQChr13g0417841 Helianthus annuus HOM05D004152 ORTHO05D004878 2.4e-78 296.2 237 64.1
MD06G1055800 Malus domestica HOM05D004152 ORTHO05D004878 3.2e-78 295.8 253 64.8
Manes.01G082700 Manihot esculenta HOM05D004152 ORTHO05D004878 3.2e-78 295.8 193 74.6
PSO210G0624 Papaver somniferum HOM05D004152 ORTHO05D004878 3.2e-78 295.8 241 66.4
Sabra03G0074600 Salix brachista HOM05D004152 ORTHO05D004878 4.1e-78 295.4 245 64.5
Phvul.010G153800 Phaseolus vulgaris HOM05D004152 ORTHO05D004878 5.4e-78 295.0 225 67.6
CsaV3_5G004400 Cucumis sativus L. HOM05D004152 ORTHO05D004878 9.2e-78 294.3 205 75.1
Gohir.D02G191900 Gossypium hirsutum HOM05D004152 ORTHO05D004878 1.2e-77 293.9 242 65.3
Medtr4g011180 Medicago truncatula HOM05D004152 ORTHO05D004878 1.2e-77 293.9 252 62.7
Sed0004379 Sechium edule HOM05D004152 ORTHO05D004878 1.2e-77 293.9 258 63.2
Ca_20428_v3 Cicer arietinum L. HOM05D004152 ORTHO05D004878 1.6e-77 293.5 251 62.9
Migut.A01125 Erythranthe guttata HOM05D004152 ORTHO05D004878 2.1e-77 293.1 181 79.0
Potri.003G107800 Populus trichocarpa HOM05D004152 ORTHO05D004878 3.5e-77 292.4 240 64.2
PSO210G4930 Papaver somniferum HOM05D004152 ORTHO05D004878 4.6e-77 292.0 239 66.1
SGA_v2.0_scaffold104G30172 Striga asiatica HOM05D004152 ORTHO05D004878 4.6e-77 292.0 257 63.0
Glyma.07G032200 Glycine max HOM05D004152 ORTHO05D004878 6.0e-77 291.6 238 65.1
Psat7g255640 Pisum sativum HOM05D004152 ORTHO05D004878 6.0e-77 291.6 251 61.0
FAN13G0727 Fragaria x ananassa HOM05D004152 ORTHO05D004878 7.8e-77 291.2 241 66.0
arahy.Tifrunner.gnm1.ann1.Y2K32V Arachis hypogaea HOM05D004152 ORTHO05D004878 1.0e-76 290.8 184 76.6
Glyma.08G210500 Glycine max HOM05D004152 ORTHO05D004878 1.0e-76 290.8 230 65.7
Lj3g0007947 Lotus japonicus HOM05D004152 ORTHO05D004878 1.0e-76 290.8 240 65.0
Oeu040710.1 Olea europaea HOM05D004152 ORTHO05D004878 1.0e-76 290.8 258 63.2
CSS0047405 Camellia sinensis var. sinensis HOM05D004152 ORTHO05D004878 1.3e-76 290.4 259 62.2
unitig_899.g15440 Utricularia gibba HOM05D004152 ORTHO05D004878 1.3e-76 290.4 232 66.4
Ah.12g054170 Amaranthus hybridus HOM05D004152 ORTHO05D004878 1.7e-76 290.0 255 63.1
Carub.0004s2558 Capsella rubella HOM05D004152 ORTHO05D004878 2.3e-76 289.7 244 62.7
Prupe.5G066300 Prunus persica HOM05D004152 ORTHO05D004878 2.3e-76 289.7 254 62.6
CiPaw.16G091100 Carya illinoinensis HOM05D004152 ORTHO05D004878 3.9e-76 288.9 264 62.5
BcaC01g05264 Brassica carinata HOM05D004152 ORTHO05D004878 5.1e-76 288.5 256 64.1
Cfa019694 Carpinus fangiana HOM05D004152 ORTHO05D004878 5.1e-76 288.5 248 62.9
DCAR_002274 Daucus carota HOM05D004152 ORTHO05D004878 5.1e-76 288.5 240 65.8
EL10Ac5g12362 Beta vulgaris HOM05D004152 ORTHO05D004878 1.1e-75 287.3 252 63.1
FAN18G1702 Fragaria x ananassa HOM05D004152 ORTHO05D004878 1.1e-75 287.3 240 63.8
SalBow6G1227 Salvia bowleyana HOM05D004152 ORTHO05D004878 1.1e-75 287.3 243 64.6
FvH4_5g19250 Fragaria vesca HOM05D004152 ORTHO05D004878 1.5e-75 287.0 240 63.8
FAN04G2897 Fragaria x ananassa HOM05D004152 ORTHO05D004878 1.5e-75 287.0 239 63.6
Atru.chr9.1286 Acer truncatum HOM05D004152 ORTHO05D004878 1.9e-75 286.6 244 62.7
DCAR_008502 Daucus carota HOM05D004152 ORTHO05D004878 1.9e-75 286.6 227 68.3
Rhsim07G0110300 Rhododendron simsii HOM05D004152 ORTHO05D004878 1.9e-75 286.6 247 64.8
Ciclev10021871m.g Citrus clementina HOM05D004152 ORTHO05D004878 2.5e-75 286.2 253 61.3
AUR62007107 Chenopodium quinoa HOM05D004152 ORTHO05D004878 3.3e-75 285.8 253 62.8
FAN08G2273 Fragaria x ananassa HOM05D004152 ORTHO05D004878 3.3e-75 285.8 241 64.3
Lalb_Chr25g0279491 Lupinus albus HOM05D004152 ORTHO05D004878 5.6e-75 285.0 229 64.6
Nn6g33894 Nelumbo nucifera HOM05D004152 ORTHO05D004878 5.6e-75 285.0 240 62.1
TAR629G1833 Trochodendron aralioides HOM05D004152 ORTHO05D004878 1.6e-74 283.5 251 61.8
MSTRG.12117 Avicennia marina HOM05D004152 ORTHO05D004878 4.7e-74 282.0 258 60.1
CAN.G62.23 Capsicum annuum HOM05D004152 ORTHO05D004878 4.7e-74 282.0 194 73.7
Sc10g0005540 Simmondsia chinensis HOM05D004152 ORTHO05D004878 8.1e-74 281.2 238 64.3
AUR62019969 Chenopodium quinoa HOM05D004152 ORTHO05D004878 1.8e-73 280.0 245 64.1
Nitab4.5_0002881g0130 Nicotiana tabacum HOM05D004152 ORTHO05D004878 1.2e-72 277.3 254 59.8
SEGI_19785 Sequoiadendron giganteum HOM05D004152 ORTHO05D004878 8.4e-71 271.2 247 59.5
Peaxi162Scf01022g00023 Petunia axillaris HOM05D004152 ORTHO05D004878 4.1e-70 268.9 240 60.0
Lj8A264G55 Lonicera japonica HOM05D004152 ORTHO05D004878 1.6e-69 266.9 174 77.0
ATR0693G400 Amborella trichopoda HOM05D004152 ORTHO05D004878 1.1e-67 260.8 221 62.4
Lsat_1_v5_gn_6_92521 Lactuca sativa HOM05D004152 ORTHO05D004878 1.1e-67 260.8 261 57.9
Hund14573 Selenicereus undatus HOM05D004152 ORTHO05D004878 1.6e-66 256.9 203 65.5
Actinidia10839 Actinidia chinensis HOM05D004152 ORTHO05D004878 2.8e-66 256.1 161 76.4
CDE11G0751 Ceratophyllum demersum HOM05D004152 ORTHO05D004878 2.8e-66 256.1 220 62.3
SMO274G0039 Selaginella moellendorffii HOM05D004152 ORTHO05D004878 4.7e-66 255.4 191 64.9
Mapoly0001s0104 Marchantia polymorpha HOM05D004152 ORTHO05D004878 6.2e-66 255.0 211 61.6
Os02g0655300 Oryza sativa ssp. japonica HOM05D004152 ORTHO05D004878 1.8e-65 253.4 214 62.1
Pp3c1_29090 Physcomitrium patens HOM05D004152 ORTHO05D004878 1.2e-64 250.8 206 59.7
Zm00001eb249330 Zea mays HOM05D004152 ORTHO05D004878 2.6e-64 249.6 233 58.4
Cre06.g252650 Chlamydomonas reinhardtii HOM05D004152 ORTHO05D004878 1.3e-63 247.3 180 66.1
Pp3c14_19120 Physcomitrium patens HOM05D004152 ORTHO05D004878 3.8e-63 245.7 203 59.6
AagrBONN_evm.TU.Sc2ySwM_228.3330 Anthoceros agrestis HOM05D004152 ORTHO05D004878 4.2e-62 242.3 249 52.6
Dinv39162 Davidia involucrata HOM05D004152 ORTHO05D004878 3.6e-58 229.2 161 73.3
Nitab4.5_0001410g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 5.8e-56 221.9 207 58.0
Gohir.A03G168700 Gossypium hirsutum HOM05D004152 ORTHO05D004878 1.7e-55 220.3 242 55.4
CDE11G0227 Ceratophyllum demersum HOM05D004152 ORTHO05D004878 1.1e-54 217.6 154 68.2
SHI09309 Sapria himalayana HOM05D004152 ORTHO05D004878 1.6e-50 203.8 136 71.3
Cc08_g12220 Coffea canephora HOM05D004152 ORTHO05D004878 2.4e-49 199.9 186 60.8
EL10Ac5g12363 Beta vulgaris HOM05D004152 ORTHO05D004878 1.5e-48 197.2 231 50.6
HPP92_020921 Vanilla planifolia HOM05D004152 ORTHO05D004878 7.6e-48 194.9 190 55.8
SalBow1G7183 Salvia bowleyana HOM05D004152 ORTHO05D004878 9.9e-48 194.5 186 57.0
Dinv21650 Davidia involucrata HOM05D004152 ORTHO05D004878 2.2e-47 193.4 115 80.0
Carub.0005s2576 Capsella rubella HOM05D004152 ORTHO05D004878 1.1e-46 191.0 214 53.3
Nitab4.5_0002372g0010 Nicotiana tabacum HOM05D004152 ORTHO05D004878 2.4e-46 189.9 121 79.3
Lj8A267T12 Lonicera japonica HOM05D004152 ORTHO05D004878 2.5e-43 179.9 258 47.7
Actinidia31515 Actinidia chinensis HOM05D004152 ORTHO05D004878 1.6e-42 177.2 189 55.6
Lj8A266T18 Lonicera japonica HOM05D004152 ORTHO05D004878 7.6e-40 168.3 258 46.5
TPR.G10893 Trifolium pratense HOM05D004152 ORTHO05D004878 1.3e-39 167.5 128 66.4
Oeu047732.1 Olea europaea HOM05D004152 ORTHO05D004878 4.9e-39 165.6 244 45.9
Ah.12g054180 Amaranthus hybridus HOM05D004152 ORTHO05D004878 1.9e-38 163.7 213 46.5
Rhsim05G0121600 Rhododendron simsii HOM05D004152 ORTHO05D004878 3.5e-37 159.5 183 52.5
Sed0021243 Sechium edule HOM05D004152 ORTHO05D004878 4.6e-37 159.1 169 55.0
BcaB05g25308 Brassica carinata HOM05D004152 ORTHO05D004878 1.6e-34 150.6 99 71.7
A05p03570 Brassica napus HOM05D000373 ORTHO05D007048 3.6e-29 132.9 80 78.8
C04p04140 Brassica napus HOM05D000373 ORTHO05D007048 3.6e-29 132.9 82 76.8
Lsat_1_v5_gn_7_1160 Lactuca sativa HOM05D004152 ORTHO05D004878 4.8e-26 122.5 79 74.7
SalBow1G0783 Salvia bowleyana HOM05D001430 ORTHO05D004878 4.5e-24 115.9 96 56.2
AUR62007106 Chenopodium quinoa HOM05D004152 ORTHO05D004878 1.9e-22 110.5 115 55.7
ATR0693G063 Amborella trichopoda HOM05D004152 ORTHO05D004878 1.5e-19 100.9 78 64.1
Lsat_1_v5_gn_5_55401 Lactuca sativa HOM05D004152 ORTHO05D004878 2.6e-19 100.1 130 50.0
Rhsim03G0103100 Rhododendron simsii HOM05D004152 ORTHO05D004878 4.8e-18 95.9 88 56.8
GSVIVG01007403001 Vitis vinifera HOM05D004152 ORTHO05D004878 7.7e-16 88.6 212 34.4
Ah.14g083550 Amaranthus hybridus HOM05D004152 ORTHO05D004878 2.0e-11 73.9 50 72.0
MCO01G562 Micromonas commoda HOM05D003112 ORTHO05D003660 3.3e-11 73.2 123 35.8
C03p28580 Brassica napus HOM05D004152 ORTHO05D004878 1.3e-10 71.2 71 43.7
CsaV3_5G004360 Cucumis sativus L. HOM05D004152 ORTHO05D004878 1.8e-09 67.4 55 61.8
PRCOL_00005264 Prasinoderma coloniale HOM05D003112 ORTHO05D003660 3.1e-09 66.6 110 36.4
Cfa024802 Carpinus fangiana HOM05D003112 ORTHO05D003660 4.1e-09 66.2 134 35.1
A03p23960 Brassica napus HOM05D004152 ORTHO05D004878 1.6e-08 64.3 47 66.0
COL.COLO4_34273 Corchorus olitorius HOM05D004152 ORTHO05D004878 1.6e-08 64.3 156 34.0
BcaB01g00650 Brassica carinata HOM05D004152 ORTHO05D004878 1.0e-07 61.6 46 58.7
BcaC01g01539 Brassica carinata HOM05D004152 ORTHO05D004878 2.5e-06 57.0 62 50.0


User provided reference genes

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