Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR122950 Cardamine hirsuta HOM05D006184 ORTHO05D007862 0.0e+00 1569.7 762 100.0
AL4G24380 Arabidopsis lyrata HOM05D006184 ORTHO05D007862 0.0e+00 1297.0 644 97.7
AT2G29630 Arabidopsis thaliana HOM05D006184 ORTHO05D007862 0.0e+00 1286.6 644 97.5
Sp4g12340 Schrenkiella parvula HOM05D006184 ORTHO05D007862 0.0e+00 1286.6 651 95.7
Carub.0004s1072 Capsella rubella HOM05D006184 ORTHO05D007862 0.0e+00 1281.5 648 96.8
Thhalv10016370m.g Eutrema salsugineum HOM05D006184 ORTHO05D007862 0.0e+00 1277.3 645 95.8
BcaB02g10267 Brassica carinata HOM05D006184 ORTHO05D007862 0.0e+00 1276.2 649 95.2
BraA05t20491Z Brassica rapa HOM05D006184 ORTHO05D007862 0.0e+00 1270.4 647 95.7
A05p15770 Brassica napus HOM05D006184 ORTHO05D007862 0.0e+00 1268.8 647 95.5
BcaC02g11044 Brassica carinata HOM05D006184 ORTHO05D007862 0.0e+00 1265.4 647 95.2
C04p21210 Brassica napus HOM05D006184 ORTHO05D007862 0.0e+00 1265.4 647 95.2
BolC4t23646H Brassica oleracea HOM05D006184 ORTHO05D007862 0.0e+00 1258.0 647 94.6
Aa31LG5G7380 Aethionema arabicum HOM05D006184 ORTHO05D007862 0.0e+00 1217.2 649 90.6
MD03G1074000 Malus domestica HOM05D006184 ORTHO05D007862 0.0e+00 1193.7 695 84.2
MD11G1080300 Malus domestica HOM05D006184 ORTHO05D007862 0.0e+00 1187.9 654 87.9
FAN25G1982 Fragaria x ananassa HOM05D006184 ORTHO05D007862 0.0e+00 1186.8 654 87.9
FvH4_3g38200 Fragaria vesca HOM05D006184 ORTHO05D007862 0.0e+00 1185.2 654 87.9
Manes.02G121696 Manihot esculenta HOM05D006184 ORTHO05D007862 0.0e+00 1184.1 653 87.7
Prupe.6G060700 Prunus persica HOM05D006184 ORTHO05D007862 0.0e+00 1184.1 651 87.6
FAN21G1896 Fragaria x ananassa HOM05D006184 ORTHO05D007862 0.0e+00 1183.3 722 81.4
FAN11G1847 Fragaria x ananassa HOM05D006184 ORTHO05D007862 0.0e+00 1179.1 654 87.3
Manes.01G164200 Manihot esculenta HOM05D006184 ORTHO05D007862 0.0e+00 1179.1 653 87.1
Phvul.006G065300 Phaseolus vulgaris HOM05D006184 ORTHO05D007862 0.0e+00 1177.5 651 86.6
Atru.chr3.4272 Acer truncatum HOM05D006184 ORTHO05D007862 0.0e+00 1177.2 650 87.2
Cfa011654 Carpinus fangiana HOM05D006184 ORTHO05D007862 0.0e+00 1176.8 650 86.0
RcHm_v2.0_Chr5g0068641 Rosa chinensis HOM05D006184 ORTHO05D007862 0.0e+00 1176.4 654 87.0
QL01p026813 Quercus lobata HOM05D006184 ORTHO05D007862 0.0e+00 1176.0 652 86.7
FAN16G1207 Fragaria x ananassa HOM05D006184 ORTHO05D007862 0.0e+00 1175.6 648 88.0
Duzib168G0250 Durio zibethinus HOM05D006184 ORTHO05D007862 0.0e+00 1175.2 651 86.9
COL.COLO4_19110 Corchorus olitorius HOM05D006184 ORTHO05D007862 0.0e+00 1174.1 651 86.6
Lj1A141T56 Lonicera japonica HOM05D006184 ORTHO05D007862 0.0e+00 1171.4 649 86.9
VMungo0540G2418 Vigna mungo HOM05D006184 ORTHO05D007862 0.0e+00 1171.4 651 86.0
CiPaw.13G080700 Carya illinoinensis HOM05D006184 ORTHO05D007862 0.0e+00 1170.2 648 86.0
Thecc.09G305300 Theobroma cacao HOM05D006184 ORTHO05D007862 0.0e+00 1170.2 649 86.6
Ciclev10027988m.g Citrus clementina HOM05D006184 ORTHO05D007862 0.0e+00 1169.8 652 86.0
Medtr3g462950 Medicago truncatula HOM05D006184 ORTHO05D007862 0.0e+00 1169.5 651 86.9
CsaV3_1G036050 Cucumis sativus L. HOM05D006184 ORTHO05D007862 0.0e+00 1166.8 649 86.1
ClCG03G000880 Citrullus lanatus HOM05D006184 ORTHO05D007862 0.0e+00 1165.6 654 85.3
Lj6g0009842 Lotus japonicus HOM05D006184 ORTHO05D007862 0.0e+00 1165.6 652 85.6
Gohir.D03G117800 Gossypium hirsutum HOM05D006184 ORTHO05D007862 0.0e+00 1164.4 650 86.5
Gorai.003G124300 Gossypium raimondii HOM05D006184 ORTHO05D007862 0.0e+00 1164.4 650 86.5
Gohir.A03G049500 Gossypium hirsutum HOM05D006184 ORTHO05D007862 0.0e+00 1164.1 650 86.5
Ca_14911_v3 Cicer arietinum L. HOM05D006184 ORTHO05D007862 0.0e+00 1163.7 650 86.3
Psat5g162200 Pisum sativum HOM05D006184 ORTHO05D007862 0.0e+00 1163.7 650 86.6
MELO3C020563.2 Cucumis melo HOM05D006184 ORTHO05D007862 0.0e+00 1163.3 648 86.1
PGR102G1950 Punica granatum HOM05D006184 ORTHO05D007862 0.0e+00 1162.5 651 85.1
Glyma.18G065700 Glycine max HOM05D006184 ORTHO05D007862 0.0e+00 1159.8 648 86.6
Hma1.2p1_0227F.1_g096310 Hydrangea macrophylla HOM05D006184 ORTHO05D007862 0.0e+00 1159.4 648 85.3
CSS0002743 Camellia sinensis var. sinensis HOM05D006184 ORTHO05D007862 0.0e+00 1159.1 647 86.7
Eucgr.B02273 Eucalyptus grandis HOM05D006184 ORTHO05D007862 0.0e+00 1159.1 649 84.9
Cc01_g13950 Coffea canephora HOM05D006184 ORTHO05D007862 0.0e+00 1157.1 647 85.6
Medtr3g462970 Medicago truncatula HOM05D006184 ORTHO05D007862 0.0e+00 1157.1 650 85.8
arahy.Tifrunner.gnm1.ann1.F7MUQP Arachis hypogaea HOM05D006184 ORTHO05D007862 0.0e+00 1156.0 651 84.6
ECA248G3465 Erigeron canadensis HOM05D006184 ORTHO05D007862 0.0e+00 1155.2 647 85.8
arahy.Tifrunner.gnm1.ann1.N1U5TX Arachis hypogaea HOM05D006184 ORTHO05D007862 0.0e+00 1154.8 651 84.6
AUR62001683 Chenopodium quinoa HOM05D006184 ORTHO05D007862 0.0e+00 1153.3 649 84.9
DCAR_007390 Daucus carota HOM05D006184 ORTHO05D007862 0.0e+00 1153.3 656 84.3
Oeu009379.1 Olea europaea HOM05D006184 ORTHO05D007862 0.0e+00 1152.1 645 85.7
Lalb_Chr17g0345001 Lupinus albus HOM05D006184 ORTHO05D007862 0.0e+00 1151.7 650 84.8
Rhsim13G0072000 Rhododendron simsii HOM05D006184 ORTHO05D007862 0.0e+00 1151.7 647 85.9
HanXRQChr13g0388411 Helianthus annuus HOM05D006184 ORTHO05D007862 0.0e+00 1149.8 648 85.2
Ah.15g099710 Amaranthus hybridus HOM05D006184 ORTHO05D007862 0.0e+00 1149.0 649 84.4
Nitab4.5_0000102g0140 Nicotiana tabacum HOM05D006184 ORTHO05D007862 0.0e+00 1148.3 647 86.1
Sed0012033 Sechium edule HOM05D006184 ORTHO05D007862 0.0e+00 1147.1 648 84.7
EL10Ac7g16128 Beta vulgaris HOM05D006184 ORTHO05D007862 0.0e+00 1146.3 649 84.4
Aqoxy4G02661 Aquilegia oxysepala HOM05D006184 ORTHO05D007862 0.0e+00 1146.0 652 85.0
Potri.009G043200 Populus trichocarpa HOM05D006184 ORTHO05D007862 0.0e+00 1146.0 648 86.0
Actinidia38827 Actinidia chinensis HOM05D006184 ORTHO05D007862 0.0e+00 1145.6 644 85.6
AUR62020099 Chenopodium quinoa HOM05D006184 ORTHO05D007862 0.0e+00 1144.8 650 84.3
Nn2g13623 Nelumbo nucifera HOM05D006184 ORTHO05D007862 0.0e+00 1144.8 647 85.2
Nitab4.5_0001970g0070 Nicotiana tabacum HOM05D006184 ORTHO05D007862 0.0e+00 1143.6 647 85.6
Hund04886 Selenicereus undatus HOM05D006184 ORTHO05D007862 0.0e+00 1143.6 656 83.4
Sc12g0000880 Simmondsia chinensis HOM05D006184 ORTHO05D007862 0.0e+00 1142.9 646 84.2
Potri.001G249200 Populus trichocarpa HOM05D006184 ORTHO05D007862 0.0e+00 1142.1 618 88.7
Solyc06g006080.3 Solanum lycopersicum HOM05D006184 ORTHO05D007862 0.0e+00 1142.1 651 84.6
GSVIVG01024789001 Vitis vinifera HOM05D006184 ORTHO05D007862 0.0e+00 1142.1 645 85.3
Ah.08g220740 Amaranthus hybridus HOM05D006184 ORTHO05D007862 0.0e+00 1140.9 649 83.8
Sopen06g002030 Solanum pennellii HOM05D006184 ORTHO05D007862 0.0e+00 1140.2 650 84.6
PGSC0003DMG400004151 Solanum tuberosum HOM05D006184 ORTHO05D007862 0.0e+00 1138.3 651 84.5
Glyma.11G176200 Glycine max HOM05D006184 ORTHO05D007862 0.0e+00 1137.9 647 85.6
Sabra09G0030600 Salix brachista HOM05D006184 ORTHO05D007862 0.0e+00 1136.7 622 88.3
SalBow2G2183 Salvia bowleyana HOM05D006184 ORTHO05D007862 0.0e+00 1136.7 647 84.9
TAR633G0598 Trochodendron aralioides HOM05D006184 ORTHO05D007862 0.0e+00 1136.7 643 84.8
Cpa.g.sc112.53 Carica papaya HOM05D006184 ORTHO05D007862 0.0e+00 1135.9 651 84.6
HanXRQChr10g0298731 Helianthus annuus HOM05D006184 ORTHO05D007862 0.0e+00 1135.6 693 79.4
Peaxi162Scf00216g00033 Petunia axillaris HOM05D006184 ORTHO05D007862 0.0e+00 1135.6 648 85.2
Lsat_1_v5_gn_5_158421 Lactuca sativa HOM05D006184 ORTHO05D007862 0.0e+00 1135.2 657 83.0
TWI79G1750 Tripterygium wilfordii HOM05D006184 ORTHO05D007862 0.0e+00 1132.5 646 83.7
Peaxi162Scf00451g00511 Petunia axillaris HOM05D006184 ORTHO05D007862 0.0e+00 1132.1 648 84.7
MSTRG.24765 Avicennia marina HOM05D006184 ORTHO05D007862 0.0e+00 1130.5 645 83.9
MBI05_g03463_MAGBIO Magnolia biondii HOM05D006184 ORTHO05D007862 0.0e+00 1130.2 648 84.7
Migut.G00281 Erythranthe guttata HOM05D006184 ORTHO05D007862 0.0e+00 1129.4 644 85.1
ATR0564G389 Amborella trichopoda HOM05D006184 ORTHO05D007862 0.0e+00 1125.9 649 84.3
Sc06g0008420 Simmondsia chinensis HOM05D006184 ORTHO05D007862 0.0e+00 1119.4 649 82.1
Oeu049272.2 Olea europaea HOM05D006184 ORTHO05D007862 0.0e+00 1117.8 713 77.6
CDE03G0407 Ceratophyllum demersum HOM05D006184 ORTHO05D007862 0.0e+00 1112.8 649 81.8
CDE04G0688 Ceratophyllum demersum HOM05D006184 ORTHO05D007862 0.0e+00 1094.7 592 87.2
Haze_24258 Corylus avellana HOM05D006184 ORTHO05D007862 0.0e+00 1089.7 650 81.7
Os03g0679700 Oryza sativa ssp. japonica HOM05D006184 ORTHO05D007862 0.0e+00 1089.7 623 83.1
Zm00001eb051950 Zea mays HOM05D006184 ORTHO05D007862 0.0e+00 1083.9 624 82.4
CAN.G780.2 Capsicum annuum HOM05D006184 ORTHO05D007862 0.0e+00 1078.2 647 81.9
Dinv28618 Davidia involucrata HOM05D006184 ORTHO05D007862 5.2e-312 1074.3 596 87.1
SGA_v2.0_scaffold142G35644 Striga asiatica HOM05D006184 ORTHO05D007862 2.1e-311 1072.0 651 79.3
TPR.G13280 Trifolium pratense HOM05D006184 ORTHO05D007862 1.9e-304 1048.9 650 80.0
Pp3c16_8630 Physcomitrium patens HOM05D006184 ORTHO05D007862 4.2e-304 1047.7 602 84.1
Mapoly0078s0008 Marchantia polymorpha HOM05D006184 ORTHO05D007862 3.7e-300 1034.6 606 82.5
AagrBONN_evm.TU.Sc2ySwM_117.2039 Anthoceros agrestis HOM05D006184 ORTHO05D007862 1.2e-298 1029.6 597 82.6
Pp3c25_5720 Physcomitrium patens HOM05D006184 ORTHO05D007862 5.9e-298 1027.3 608 80.9
SHI12345 Sapria himalayana HOM05D006184 ORTHO05D007862 5.0e-297 1024.2 669 74.9
HPP92_012628 Vanilla planifolia HOM05D006184 ORTHO05D007862 4.2e-296 1021.1 541 88.2
SMO272G0033 Selaginella moellendorffii HOM05D006184 ORTHO05D007862 1.2e-290 1003.0 609 78.5
SMO165G0141 Selaginella moellendorffii HOM05D006184 ORTHO05D007862 2.5e-288 995.3 553 83.9
Cfa015458 Carpinus fangiana HOM05D006184 ORTHO05D007862 3.4e-285 984.9 617 78.0
CBR_g30996 Chara braunii HOM05D006184 ORTHO05D007862 1.1e-251 873.6 475 86.5
Cre05.g240850 Chlamydomonas reinhardtii HOM05D006184 ORTHO05D007862 1.9e-227 793.1 547 70.2
Sabra16G0151300 Salix brachista HOM05D006184 ORTHO05D007862 3.0e-201 706.1 423 82.5
vmacro02987 Vaccinium macrocarpon HOM05D006184 ORTHO05D007862 1.9e-187 660.2 394 80.7
Haze_26876 Corylus avellana HOM05D006184 ORTHO05D007862 4.2e-187 659.1 581 58.2
RcHm_v2.0_Chr5g0068681 Rosa chinensis HOM05D006184 ORTHO05D007862 8.3e-151 538.5 267 95.9
SMO165G0069 Selaginella moellendorffii HOM05D006184 ORTHO05D007862 1.3e-124 451.4 551 47.2
SEGI_15306 Sequoiadendron giganteum HOM05D006184 ORTHO05D007862 2.2e-71 274.6 232 58.6
Nn2g11393 Nelumbo nucifera HOM05D006184 ORTHO05D007862 1.6e-69 268.5 125 96.8
Nn2g11394 Nelumbo nucifera HOM05D006184 ORTHO05D049308 3.7e-42 177.6 101 81.2
RcHm_v2.0_Chr5g0068691 Rosa chinensis HOM05D006184 ORTHO05D049308 4.6e-40 170.6 96 82.3
Nn2g11392 Nelumbo nucifera HOM05D006184 ORTHO05D007862 2.5e-38 164.9 152 56.6
Actinidia16074 Actinidia chinensis HOM05D006184 ORTHO05D007862 6.8e-36 156.8 150 58.0
Hma1.2p1_2020F.1_g311280 Hydrangea macrophylla HOM05D006184 ORTHO05D007862 5.2e-20 104.0 53 92.5
Hma1.2p1_0315F.1_g122560 Hydrangea macrophylla HOM05D006184 ORTHO05D007862 5.8e-19 100.5 53 90.6
Ah.02g117460 Amaranthus hybridus HOM05D000595 ORTHO05D004141 1.7e-07 62.4 32 87.5


User provided reference genes

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