Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR115280 Cardamine hirsuta HOM05D004712 ORTHO05D005306 2.1e-202 708.8 343 100.0
Sp4g05810 Schrenkiella parvula HOM05D004712 ORTHO05D005306 2.8e-191 671.8 341 94.7
AT2G25910 Arabidopsis thaliana HOM05D004712 ORTHO05D005306 4.8e-191 671.0 341 94.7
AL4G17960 Arabidopsis lyrata HOM05D004712 ORTHO05D005306 1.2e-189 666.4 342 94.7
BcaB06g29616 Brassica carinata HOM05D004712 ORTHO05D005306 1.0e-188 663.3 341 93.3
Thhalv10002033m.g Eutrema salsugineum HOM05D004712 ORTHO05D005306 2.2e-188 662.1 341 93.5
C04p55830 Brassica napus HOM05D004712 ORTHO05D005306 5.5e-187 657.5 342 93.0
A04p20130 Brassica napus HOM05D004712 ORTHO05D005306 7.2e-187 657.1 342 93.0
BraA04t17594Z Brassica rapa HOM05D004712 ORTHO05D005306 7.2e-187 657.1 342 93.0
BcaC02g08320 Brassica carinata HOM05D004712 ORTHO05D005306 4.7e-186 654.4 342 92.7
BolC4t27113H Brassica oleracea HOM05D004712 ORTHO05D005306 4.7e-186 654.4 342 92.7
Aa31LG5G9770 Aethionema arabicum HOM05D004712 ORTHO05D005306 2.7e-181 638.6 352 87.5
THA.LOC104803739 Tarenaya hassleriana HOM05D004712 ORTHO05D005306 4.1e-174 614.8 343 84.5
GSVIVG01035336001 Vitis vinifera HOM05D004712 ORTHO05D005306 8.3e-159 563.9 343 78.1
QL02p001773 Quercus lobata HOM05D004712 ORTHO05D005306 1.0e-156 557.0 345 78.0
Thecc.09G050100 Theobroma cacao HOM05D004712 ORTHO05D005306 1.3e-156 556.6 345 78.6
Dinv23416 Davidia involucrata HOM05D004712 ORTHO05D005306 2.3e-156 555.8 343 76.7
Prupe.1G416100 Prunus persica HOM05D004712 ORTHO05D005306 2.3e-153 545.8 342 76.0
Ciclev10008867m.g Citrus clementina HOM05D004712 ORTHO05D005306 1.2e-152 543.5 341 75.7
Potri.018G058900 Populus trichocarpa HOM05D004712 ORTHO05D005306 2.0e-152 542.7 343 75.5
TAR624G0834 Trochodendron aralioides HOM05D004712 ORTHO05D005306 3.4e-152 542.0 341 75.7
Atru.chr7.2032 Acer truncatum HOM05D004712 ORTHO05D005306 1.7e-151 539.7 326 78.2
Hund03367 Selenicereus undatus HOM05D004712 ORTHO05D005306 2.2e-151 539.3 340 77.4
COL.COLO4_21017 Corchorus olitorius HOM05D004712 ORTHO05D005306 8.3e-151 537.3 322 78.9
Manes.03G046000 Manihot esculenta HOM05D004712 ORTHO05D005306 1.4e-150 536.6 347 75.5
Gohir.D05G046000 Gossypium hirsutum HOM05D004712 ORTHO05D005306 1.9e-150 536.2 342 74.9
Duzib168G2010 Durio zibethinus HOM05D004712 ORTHO05D005306 2.4e-150 535.8 345 75.9
Gohir.A05G044400 Gossypium hirsutum HOM05D004712 ORTHO05D005306 7.1e-150 534.3 335 75.2
Cc08_g10100 Coffea canephora HOM05D004712 ORTHO05D005306 9.2e-150 533.9 333 74.8
Nn6g35377 Nelumbo nucifera HOM05D004712 ORTHO05D005306 2.1e-149 532.7 341 75.4
Potri.006G234000 Populus trichocarpa HOM05D004712 ORTHO05D005306 4.6e-149 531.6 342 73.7
Peaxi162Scf00840g00117 Petunia axillaris HOM05D004712 ORTHO05D005306 1.7e-148 529.6 341 73.9
Aqoxy7G03946 Aquilegia oxysepala HOM05D004712 ORTHO05D005306 2.3e-148 529.3 325 76.0
AUR62009206 Chenopodium quinoa HOM05D004712 ORTHO05D005306 3.0e-148 528.9 340 74.4
CANSAT25G2372 Cannabis sativa HOM05D004712 ORTHO05D005306 3.9e-148 528.5 340 75.0
Nn6g35381 Nelumbo nucifera HOM05D004712 ORTHO05D005306 8.6e-148 527.3 345 73.6
TWI63G0904 Tripterygium wilfordii HOM05D004712 ORTHO05D005306 8.6e-148 527.3 338 74.6
Lalb_Chr22g0355941 Lupinus albus HOM05D004712 ORTHO05D005306 1.5e-147 526.6 349 73.4
MD08G1074400 Malus domestica HOM05D004712 ORTHO05D005306 1.5e-147 526.6 345 74.2
Hma1.2p1_1266F.1_g271360 Hydrangea macrophylla HOM05D004712 ORTHO05D005306 1.9e-147 526.2 311 80.1
Migut.A00161 Erythranthe guttata HOM05D004712 ORTHO05D005306 2.5e-147 525.8 335 73.4
RcHm_v2.0_Chr6g0310381 Rosa chinensis HOM05D004712 ORTHO05D005306 2.5e-147 525.8 343 74.1
Phvul.001G032800 Phaseolus vulgaris HOM05D004712 ORTHO05D005306 1.2e-146 523.5 347 72.9
CsaV3_2G025770 Cucumis sativus L. HOM05D004712 ORTHO05D005306 2.1e-146 522.7 340 71.8
SalBow4G3242 Salvia bowleyana HOM05D004712 ORTHO05D005306 2.1e-146 522.7 334 73.4
CiPaw.15G042700 Carya illinoinensis HOM05D004712 ORTHO05D005306 2.8e-146 522.3 340 73.5
Duzib150G0899 Durio zibethinus HOM05D004712 ORTHO05D005306 3.6e-146 521.9 341 74.2
ClCG08G016850 Citrullus lanatus HOM05D004712 ORTHO05D005306 6.2e-146 521.2 340 71.5
EL10Ac2g03950 Beta vulgaris HOM05D004712 ORTHO05D005306 1.8e-145 519.6 340 73.8
Glyma.14G091700 Glycine max HOM05D004712 ORTHO05D005306 1.8e-145 519.6 344 73.3
Glyma.17G231700 Glycine max HOM05D004712 ORTHO05D005306 3.1e-145 518.8 343 73.2
Ca_13194_v3 Cicer arietinum L. HOM05D004712 ORTHO05D005306 6.8e-145 517.7 339 73.7
DCAR_004451 Daucus carota HOM05D004712 ORTHO05D005306 8.9e-145 517.3 344 72.4
QL05p017273 Quercus lobata HOM05D004712 ORTHO05D005306 2.0e-144 516.2 338 73.4
HanXRQChr17g0538901 Helianthus annuus HOM05D004712 ORTHO05D005306 3.4e-144 515.4 343 72.0
GSVIVG01016906001 Vitis vinifera HOM05D004712 ORTHO05D005306 5.8e-144 514.6 338 74.0
Lj5g0015176 Lotus japonicus HOM05D004712 ORTHO05D005306 9.9e-144 513.8 338 73.7
FAN27G0349 Fragaria x ananassa HOM05D004712 ORTHO05D005306 1.7e-143 513.1 333 73.3
Psat6g019200 Pisum sativum HOM05D004712 ORTHO05D005306 2.2e-143 512.7 332 73.8
Actinidia21731 Actinidia chinensis HOM05D004712 ORTHO05D005306 4.9e-143 511.5 339 72.3
VMungo0647G0552 Vigna mungo HOM05D004712 ORTHO05D005306 4.9e-143 511.5 345 72.5
QL05p017569 Quercus lobata HOM05D004712 ORTHO05D005306 6.4e-143 511.1 338 73.1
Sabra18G0050600 Salix brachista HOM05D004712 ORTHO05D005306 8.4e-143 510.8 354 70.3
CSS0042817 Camellia sinensis var. sinensis HOM05D004712 ORTHO05D005306 1.1e-142 510.4 328 75.3
ECA246G0363 Erigeron canadensis HOM05D004712 ORTHO05D005306 1.1e-142 510.4 340 72.4
FAN20G0488 Fragaria x ananassa HOM05D004712 ORTHO05D005306 1.1e-142 510.4 330 73.6
Sabra06G0182200 Salix brachista HOM05D004712 ORTHO05D005306 1.1e-142 510.4 343 72.0
Sc09g0009600 Simmondsia chinensis HOM05D004712 ORTHO05D005306 1.1e-142 510.4 340 71.8
FvH4_2g32310 Fragaria vesca HOM05D004712 ORTHO05D005306 1.4e-142 510.0 333 73.0
CSS0005003 Camellia sinensis var. sinensis HOM05D004712 ORTHO05D005306 3.2e-142 508.8 339 72.0
Solyc08g065880.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 5.4e-142 508.1 333 70.6
Haze_18228 Corylus avellana HOM05D004712 ORTHO05D005306 7.1e-142 507.7 340 73.8
Sopen08g019580 Solanum pennellii HOM05D004712 ORTHO05D005306 7.1e-142 507.7 333 70.6
TPR.G13042 Trifolium pratense HOM05D004712 ORTHO05D005306 1.6e-141 506.5 347 71.5
FAN24G2925 Fragaria x ananassa HOM05D004712 ORTHO05D005306 3.5e-141 505.4 333 73.0
FAN15G0413 Fragaria x ananassa HOM05D004712 ORTHO05D005306 4.6e-141 505.0 333 73.0
PSO210G0832 Papaver somniferum HOM05D004712 ORTHO05D005306 2.3e-140 502.7 308 75.3
PSO210G7282 Papaver somniferum HOM05D004712 ORTHO05D005306 2.3e-140 502.7 308 75.3
AUR62040203 Chenopodium quinoa HOM05D004712 ORTHO05D005306 3.9e-140 501.9 340 71.8
Lsat_1_v5_gn_3_27140 Lactuca sativa HOM05D004712 ORTHO05D005306 8.7e-140 500.7 311 74.6
Medtr1g016970 Medicago truncatula HOM05D004712 ORTHO05D005306 4.7e-138 495.0 340 70.3
Nitab4.5_0005029g0040 Nicotiana tabacum HOM05D004712 ORTHO05D005306 1.4e-137 493.4 338 70.1
Nitab4.5_0000359g0220 Nicotiana tabacum HOM05D004712 ORTHO05D005306 3.1e-137 492.3 338 70.1
ATR0789G022 Amborella trichopoda HOM05D004712 ORTHO05D005306 5.3e-137 491.5 338 71.0
PGR031G0938 Punica granatum HOM05D004712 ORTHO05D005306 1.5e-136 490.0 310 72.9
arahy.Tifrunner.gnm1.ann1.QZ1T53 Arachis hypogaea HOM05D004712 ORTHO05D005306 3.4e-136 488.8 337 69.7
TWI34G1658 Tripterygium wilfordii HOM05D004712 ORTHO05D005306 5.8e-136 488.0 323 73.4
Cfa017921 Carpinus fangiana HOM05D004712 ORTHO05D005306 7.6e-136 487.6 340 69.7
SEGI_23712 Sequoiadendron giganteum HOM05D004712 ORTHO05D005306 9.9e-136 487.3 325 71.7
Os01g0566900 Oryza sativa ssp. japonica HOM05D004712 ORTHO05D005306 1.3e-135 486.9 322 69.9
arahy.Tifrunner.gnm1.ann1.289CQF Arachis hypogaea HOM05D004712 ORTHO05D005306 1.7e-135 486.5 337 69.7
MELO3C010771.2 Cucumis melo HOM05D004712 ORTHO05D005306 1.7e-135 486.5 318 71.7
Rhsim08G0230100 Rhododendron simsii HOM05D004712 ORTHO05D005306 2.9e-135 485.7 386 63.5
Rhsim12G0204300 Rhododendron simsii HOM05D004712 ORTHO05D005306 9.3e-134 480.7 340 67.1
PGSC0003DMG401002514 Solanum tuberosum HOM05D004712 ORTHO05D005306 1.3e-132 476.9 340 66.5
Gorai.009G047400 Gossypium raimondii HOM05D004712 ORTHO05D005306 1.7e-132 476.5 304 75.3
Peaxi162Scf00038g01243 Petunia axillaris HOM05D004712 ORTHO05D005306 3.3e-131 472.2 340 67.6
Nitab4.5_0005661g0020 Nicotiana tabacum HOM05D004712 ORTHO05D005306 5.6e-131 471.5 340 67.4
Zm00001eb159970 Zea mays HOM05D004712 ORTHO05D005306 4.8e-130 468.4 316 69.9
HPP92_009150 Vanilla planifolia HOM05D004712 ORTHO05D005306 4.0e-129 465.3 343 65.6
Zm00001eb356940 Zea mays HOM05D004712 ORTHO05D005306 5.3e-129 464.9 338 67.2
CAN.G20.6 Capsicum annuum HOM05D004712 ORTHO05D005306 6.9e-129 464.5 300 72.0
Gohir.D03G057300 Gossypium hirsutum HOM05D004712 ORTHO05D005306 4.5e-128 461.8 340 65.0
Ah.10g034640 Amaranthus hybridus HOM05D004712 ORTHO05D005306 9.9e-128 460.7 362 62.7
Lj7A695G32 Lonicera japonica HOM05D004712 ORTHO05D005306 2.2e-127 459.5 319 71.2
Gohir.A02G116301 Gossypium hirsutum HOM05D004712 ORTHO05D005306 3.2e-126 455.7 307 68.4
AUR62040198 Chenopodium quinoa HOM05D004712 ORTHO05D005306 7.9e-125 451.1 320 69.4
vmacro05273 Vaccinium macrocarpon HOM05D004712 ORTHO05D005306 1.8e-124 449.9 334 67.7
MBI04_g12189_MAGBIO Magnolia biondii HOM05D004712 ORTHO05D005306 3.0e-124 449.1 356 64.0
Sed0015351 Sechium edule HOM05D004712 ORTHO05D005306 7.4e-123 444.5 338 63.0
Nitab4.5_0010821g0020 Nicotiana tabacum HOM05D004712 ORTHO05D005306 6.2e-122 441.4 319 67.1
AagrBONN_evm.TU.Sc2ySwM_228.3302 Anthoceros agrestis HOM05D004712 ORTHO05D005306 1.1e-121 440.7 323 65.3
MD15G1062100 Malus domestica HOM05D004712 ORTHO05D005306 1.4e-121 440.3 345 64.1
Carub.0004s0573 Capsella rubella HOM05D004712 ORTHO05D005306 2.4e-121 439.5 223 93.7
Eucgr.C00628 Eucalyptus grandis HOM05D004712 ORTHO05D005306 1.2e-120 437.2 266 78.2
Mapoly0072s0029 Marchantia polymorpha HOM05D004712 ORTHO05D005306 5.8e-120 434.9 341 62.5
Dinv30410 Davidia involucrata HOM05D004712 ORTHO05D005306 6.4e-119 431.4 264 77.7
AUR62031977 Chenopodium quinoa HOM05D004712 ORTHO05D005306 4.2e-118 428.7 305 65.9
Solyc03g121250.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 4.6e-117 425.2 284 69.4
Lj5A50G64 Lonicera japonica HOM05D004712 ORTHO05D005306 1.8e-116 423.3 290 69.3
Manes.16G077100 Manihot esculenta HOM05D004712 ORTHO05D005306 1.2e-112 410.6 248 79.8
SMO174G0103 Selaginella moellendorffii HOM05D004712 ORTHO05D005306 1.0e-111 407.5 316 62.0
Pp3c15_8210 Physcomitrium patens HOM05D004712 ORTHO05D005306 1.0e-108 397.5 309 61.5
Sopen03g040060 Solanum pennellii HOM05D004712 ORTHO05D005306 2.5e-107 392.9 288 65.6
Sopen01g026340 Solanum pennellii HOM05D000014 ORTHO05D005306 3.3e-107 392.5 314 61.1
vmacro17006 Vaccinium macrocarpon HOM05D004712 ORTHO05D005306 2.2e-98 363.2 406 49.5
Glyma.04G087900 Glycine max HOM05D004712 ORTHO05D005306 1.1e-94 350.9 306 59.8
AUR62022272 Chenopodium quinoa HOM05D004712 ORTHO05D005306 4.8e-90 335.5 228 67.5
COL.COLO4_30565 Corchorus olitorius HOM05D004712 ORTHO05D005306 9.1e-89 331.3 260 63.5
CAN.G1143.35 Capsicum annuum HOM05D004712 ORTHO05D005306 2.1e-85 320.1 243 63.4
Pp3c9_13080 Physcomitrium patens HOM05D004712 ORTHO05D005306 9.1e-81 304.7 247 60.3
unitig_748.g8268 Utricularia gibba HOM05D004712 ORTHO05D005306 4.5e-80 302.4 305 51.1
unitig_32.g10885 Utricularia gibba HOM05D004712 ORTHO05D005306 6.3e-74 282.0 269 55.8
CDE06G1081 Ceratophyllum demersum HOM05D004712 ORTHO05D005306 2.2e-71 273.5 169 75.1
Solyc01g060200.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 6.5e-71 271.9 305 48.2
Cpa.g.sc1834.1 Carica papaya HOM05D004712 ORTHO05D005306 2.5e-70 270.0 174 74.7
SGA_v2.0_scaffold88G27214 Striga asiatica HOM05D004712 ORTHO05D005306 3.5e-56 223.0 144 69.4
Gorai.003G060400 Gossypium raimondii HOM05D004712 ORTHO05D005306 5.0e-55 219.2 178 62.4
Cpa.g.c30793.3 Carica papaya HOM05D004712 ORTHO05D005306 8.6e-55 218.4 131 75.6
CDE06G1637 Ceratophyllum demersum HOM05D004712 ORTHO05D005306 3.6e-45 186.4 118 75.4
Glyma.20G062400 Glycine max HOM05D004712 ORTHO05D005306 1.7e-34 151.0 96 76.0
ATR0626G141 Amborella trichopoda HOM05D004712 ORTHO05D005306 2.1e-29 134.0 167 49.1
Cpa.g.sc131.9 Carica papaya HOM05D004712 ORTHO05D005306 2.1e-24 117.5 98 57.1
Cpa.g.sc131.11 Carica papaya HOM05D004712 ORTHO05D005306 1.9e-22 110.9 64 78.1
Hma1.2p1_0051F.1_g029750 Hydrangea macrophylla HOM05D004712 ORTHO05D005306 5.6e-22 109.4 66 75.8
Cpa.g.sc131.8 Carica papaya HOM05D004712 ORTHO05D005306 2.8e-21 107.1 69 76.8
Cc04_g02330 Coffea canephora HOM05D004712 ORTHO05D005306 7.1e-17 92.4 81 54.3
COL.COLO4_30564 Corchorus olitorius HOM05D004712 ORTHO05D005306 1.6e-16 91.3 55 74.5
TAR636G2080 Trochodendron aralioides HOM05D000850 ORTHO05D000266 1.6e-13 81.3 80 52.5
Cre03.g152425 Chlamydomonas reinhardtii HOM05D004712 ORTHO05D005306 2.8e-13 80.5 198 30.3
MSTRG.22613 Avicennia marina HOM05D004712 ORTHO05D005306 6.9e-12 75.9 67 52.2
CARHR290840 Cardamine hirsuta HOM05D006128 ORTHO05D007466 4.5e-11 73.2 58 69.0
Cre03.g152400 Chlamydomonas reinhardtii HOM05D015906 ORTHO05D028597 5.8e-11 72.8 244 27.9
Carub.0004s0574 Capsella rubella HOM05D006128 ORTHO05D007466 2.4e-09 67.4 41 75.6
AL4G17994 Arabidopsis lyrata HOM05D006128 ORTHO05D007466 7.1e-09 65.9 36 86.1
Cre03.g205921 Chlamydomonas reinhardtii HOM05D015906 ORTHO05D005306 7.1e-09 65.9 213 26.8
MCO15G238 Micromonas commoda HOM05D015906 ORTHO05D005306 9.3e-09 65.5 95 34.7
Nn4g24691 Nelumbo nucifera HOM05D004712 ORTHO05D005306 1.6e-08 64.7 48 62.5
AT2G25920 Arabidopsis thaliana HOM05D006128 ORTHO05D007466 2.1e-08 64.3 36 83.3
MCO09G663 Micromonas commoda HOM05D015906 ORTHO05D005306 7.9e-08 62.4 170 28.2
FAN23G2178 Fragaria x ananassa HOM05D002024 ORTHO05D004352 2.3e-07 60.8 154 28.6
EL10Ac9g21163 Beta vulgaris HOM05D004712 ORTHO05D005306 5.1e-07 59.7 78 46.2
Cre03.g205300 Chlamydomonas reinhardtii HOM05D062317 ORTHO05D140869 8.7e-07 58.9 183 28.4
EL10Ac2g04414 Beta vulgaris HOM05D002024 ORTHO05D004352 1.1e-06 58.5 156 26.9
PGR042G3011 Punica granatum HOM05D002024 ORTHO05D007288 1.9e-06 57.8 173 28.3
FAN26G3161 Fragaria x ananassa HOM05D002024 ORTHO05D004352 2.5e-06 57.4 153 28.8
Lsat_1_v5_gn_6_31721 Lactuca sativa HOM05D002024 ORTHO05D004352 2.5e-06 57.4 152 25.7
FvH4_1g28500 Fragaria vesca HOM05D002024 ORTHO05D004352 3.3e-06 57.0 153 28.8
FAN19G0777 Fragaria x ananassa HOM05D002024 ORTHO05D004352 3.3e-06 57.0 153 28.8
ATR0697G132 Amborella trichopoda HOM05D002024 ORTHO05D004352 4.3e-06 56.6 152 28.9
Aqoxy1G00536 Aquilegia oxysepala HOM05D002024 ORTHO05D004352 4.3e-06 56.6 152 28.9
AT1G54440 Arabidopsis thaliana HOM05D002024 ORTHO05D004352 4.3e-06 56.6 153 29.4
Medtr7g086370 Medicago truncatula HOM05D002024 ORTHO05D004352 7.4e-06 55.8 156 27.6
Psat3g086680 Pisum sativum HOM05D002024 ORTHO05D004352 7.4e-06 55.8 157 27.4
MELO3C008822.2 Cucumis melo HOM05D002024 ORTHO05D004352 9.6e-06 55.5 153 28.8


User provided reference genes

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