Gene: Sopen08g019580

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen08g019580
  • Transcript Identifier Sopen08g019580.1
  • Gene Type Coding gene
  • Location Spenn-ch08 : 58331517-58340562 : positive

Gene Family Information

  • ID HOM05D004712
  • #Genes/#Species 155/95
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen08g019580.1

Descriptions

  • Description 3-5 exonuclease domain-containing protein / K homology domain-containing protein / KH domain-containing protein | FUNCTIONS IN: 3-5 exonuclease activity, RNA binding, nucleic acid binding | INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | LOCATED IN: intracellular | EXPRESSED IN: 23 plant structures | EXPRESSED DURING: 15 growth stages | CONTAINS InterPro DOMAIN/s: K Homology , K Homology, type 1, subgroup , K Homology, type 1 , Polynucleotidyl transferase, ribonuclease H fold , 3, apos, -5, apos | exonuclease | BEST Arabidopsis thaliana protein match is: unknown protein
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006139
IEA
InterPronucleobase-containing compound metabolic process

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003723
IEA
InterProRNA binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0008408
IEA
InterPro3'-5' exonuclease activity

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036612 K Homology domain, type 1 superfamily
IPR012337 Ribonuclease H-like superfamily
IPR036397 Ribonuclease H superfamily
IPR004087 K Homology domain
IPR002562 3'-5' exonuclease domain
IPR004088 K Homology domain, type 1
Mapman id Description
35.1 not assigned.annotated