Gene: AT2G25910

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT2G25910
  • Transcript Identifier AT2G25910.1
  • Gene Type Coding gene
  • Location Chr2 : 11049379-11051997 : negative

Gene Family Information

  • ID HOM05D004712
  • #Genes/#Species 155/95
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT2G25910.1
  • uniprot O82306

Descriptions

  • Description 3'-5' exonuclease domain-containing protein / K homology domain-containing protein / KH domain-containing protein
  • Computational description 3'-5' exonuclease domain-containing protein / K homology domain-containing protein / KH domain-containing protein; FUNCTIONS IN: 3'-5' exonuclease activity, RNA binding, nucleic acid binding; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: K Homology (InterPro:IPR004087), K Homology, type 1, subgroup (InterPro:IPR018111), K Homology, type 1 (InterPro:IPR004088), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), 3'-5' exonuclease (InterPro:IPR002562); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G25920.1); Has 1067 Blast hits to 1067 proteins in 347 species: Archae - 0; Bacteria - 413; Metazoa - 196; Fungi - 59; Plants - 125; Viruses - 0; Other Eukaryotes - 274 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0090305
IEA
GOA Databasenucleic acid phosphodiester bond hydrolysis
GO:0090305
ISS
Gene Ontologynucleic acid phosphodiester bond hydrolysis
GO:0006139
IEA
GOA Databasenucleobase-containing compound metabolic process
GO:0006139
IEA
InterPronucleobase-containing compound metabolic process

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003723
IEA
Gene OntologyRNA binding
GO:0003723
IEA
InterProRNA binding
GO:0008408
IEA
Gene Ontology3'-5' exonuclease activity
GO:0008408
IEA
InterPro3'-5' exonuclease activity
GO:0004527
IEA
GOA Databaseexonuclease activity
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
ISM
Gene Ontologycytoplasm

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036612 K Homology domain, type 1 superfamily
IPR002562 3'-5' exonuclease domain
IPR036397 Ribonuclease H superfamily
IPR004088 K Homology domain, type 1
IPR004087 K Homology domain
IPR012337 Ribonuclease H-like superfamily
Mapman id Description
35.1 not assigned.annotated