Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR092290 Cardamine hirsuta HOM05D006900 ORTHO05D008651 4.1e-207 725.3 648 100.0
AL3G30020 Arabidopsis lyrata HOM05D006900 ORTHO05D008651 3.8e-181 639.0 653 93.1
Sp3g15260 Schrenkiella parvula HOM05D006900 ORTHO05D008651 6.1e-179 631.7 650 92.2
Carub.0003s1679 Capsella rubella HOM05D006900 ORTHO05D008651 4.9e-176 622.1 650 92.5
Thhalv10020271m.g Eutrema salsugineum HOM05D006900 ORTHO05D008651 9.5e-172 607.8 653 91.6
A05p32690 Brassica napus HOM05D006900 ORTHO05D008651 1.3e-152 544.3 652 87.6
C05p49400 Brassica napus HOM05D006900 ORTHO05D008651 1.3e-152 544.3 652 87.6
BraA05t22092Z Brassica rapa HOM05D006900 ORTHO05D008651 3.8e-152 542.7 652 87.6
Aa31LG8G4070 Aethionema arabicum HOM05D006900 ORTHO05D008651 4.1e-151 539.3 658 84.0
BcaB06g25797 Brassica carinata HOM05D006900 ORTHO05D008651 9.2e-151 538.1 652 87.7
BcaC05g28835 Brassica carinata HOM05D006900 ORTHO05D008651 1.0e-149 534.6 653 87.0
BolC5t33686H Brassica oleracea HOM05D006900 ORTHO05D008651 1.0e-149 534.6 653 87.0
THA.LOC104820304 Tarenaya hassleriana HOM05D006900 ORTHO05D008651 8.2e-123 445.3 637 79.3
AT3G17040 Arabidopsis thaliana HOM05D006900 ORTHO05D008651 2.4e-114 417.2 274 86.5
Potri.010G145000 Populus trichocarpa HOM05D006900 ORTHO05D008651 5.0e-88 329.7 653 70.1
GSVIVG01034997001 Vitis vinifera HOM05D006900 ORTHO05D008651 6.5e-88 329.3 634 71.8
Prupe.1G117800 Prunus persica HOM05D006900 ORTHO05D008651 7.2e-87 325.9 649 69.5
TWI09G0824 Tripterygium wilfordii HOM05D006900 ORTHO05D008651 1.2e-86 325.1 651 70.5
Sabra10G0112000 Salix brachista HOM05D006900 ORTHO05D008651 2.1e-86 324.3 657 69.3
Hma1.2p1_0013F.1_g008570 Hydrangea macrophylla HOM05D006900 ORTHO05D008651 4.7e-86 323.2 655 70.1
Duzib212G0988 Durio zibethinus HOM05D006900 ORTHO05D008651 5.2e-85 319.7 603 73.5
Manes.03G204600 Manihot esculenta HOM05D006900 ORTHO05D008651 6.7e-85 319.3 590 73.7
MD13G1154800 Malus domestica HOM05D006900 ORTHO05D008651 1.5e-84 318.2 644 69.6
arahy.Tifrunner.gnm1.ann1.88EKIY Arachis hypogaea HOM05D006900 ORTHO05D008651 2.2e-83 314.3 576 75.9
PGR004G2297 Punica granatum HOM05D006900 ORTHO05D008651 2.2e-83 314.3 559 76.7
Gohir.A10G171600 Gossypium hirsutum HOM05D006900 ORTHO05D008651 3.7e-83 313.5 645 70.1
Gohir.D10G178700 Gossypium hirsutum HOM05D006900 ORTHO05D008651 3.7e-83 313.5 645 69.8
arahy.Tifrunner.gnm1.ann1.Z0RY6M Arachis hypogaea HOM05D006900 ORTHO05D008651 6.3e-83 312.8 640 71.1
CSS0034541 Camellia sinensis var. sinensis HOM05D006900 ORTHO05D008651 6.3e-83 312.8 639 70.1
Gorai.011G199800 Gossypium raimondii HOM05D006900 ORTHO05D008651 6.3e-83 312.8 645 69.8
COL.COLO4_34620 Corchorus olitorius HOM05D006900 ORTHO05D008651 1.1e-82 312.0 603 72.6
Lsat_1_v5_gn_6_18120 Lactuca sativa HOM05D006900 ORTHO05D008651 1.8e-82 311.2 596 73.0
Migut.G00056 Erythranthe guttata HOM05D006900 ORTHO05D008651 2.4e-82 310.8 643 70.0
Thecc.04G300100 Theobroma cacao HOM05D006900 ORTHO05D008651 5.3e-82 309.7 661 68.5
Actinidia13360 Actinidia chinensis HOM05D006900 ORTHO05D008651 9.1e-82 308.9 583 75.1
HanXRQChr13g0393421 Helianthus annuus HOM05D006900 ORTHO05D008651 9.1e-82 308.9 592 72.8
TAR362G0296 Trochodendron aralioides HOM05D006900 ORTHO05D008651 1.2e-81 308.5 637 70.0
PGSC0003DMG400011531 Solanum tuberosum HOM05D006900 ORTHO05D008651 1.6e-81 308.1 682 66.7
Dinv15174 Davidia involucrata HOM05D006900 ORTHO05D008651 4.5e-81 306.6 555 77.7
CsaV3_3G015170 Cucumis sativus L. HOM05D006900 ORTHO05D008651 5.9e-81 306.2 632 69.5
Solyc04g009020.4 Solanum lycopersicum HOM05D006900 ORTHO05D008651 5.9e-81 306.2 682 66.6
QL06p012004 Quercus lobata HOM05D006900 ORTHO05D008651 7.7e-81 305.8 652 68.3
ECA233G1261 Erigeron canadensis HOM05D006900 ORTHO05D008651 1.0e-80 305.4 518 81.3
Cfa015319 Carpinus fangiana HOM05D006900 ORTHO05D008651 1.7e-80 304.7 617 70.7
Sopen04g004200 Solanum pennellii HOM05D006900 ORTHO05D008651 1.7e-80 304.7 681 66.5
Cc03_g00870 Coffea canephora HOM05D006900 ORTHO05D008651 2.9e-80 303.9 515 81.7
CAN.G274.12 Capsicum annuum HOM05D006900 ORTHO05D008651 5.0e-80 303.1 678 66.5
Atru.chr4.3007 Acer truncatum HOM05D006900 ORTHO05D008651 6.5e-80 302.8 640 70.3
SGA_v2.0_scaffold104G30080 Striga asiatica HOM05D006900 ORTHO05D008651 6.5e-80 302.8 646 68.9
MELO3C006715.2 Cucumis melo HOM05D006900 ORTHO05D008651 8.5e-80 302.4 630 69.2
Peaxi162Scf00681g00223 Petunia axillaris HOM05D006900 ORTHO05D008651 8.5e-80 302.4 606 71.9
Eucgr.H04042 Eucalyptus grandis HOM05D006900 ORTHO05D008651 1.1e-79 302.0 574 65.7
Nn3g21725 Nelumbo nucifera HOM05D006900 ORTHO05D008651 1.1e-79 302.0 576 74.3
Lj6A690T75 Lonicera japonica HOM05D006900 ORTHO05D008651 1.5e-79 301.6 578 74.7
Medtr4g122060 Medicago truncatula HOM05D006900 ORTHO05D008651 1.9e-79 301.2 638 69.9
MSTRG.10150 Avicennia marina HOM05D006900 ORTHO05D008651 2.5e-79 300.8 625 70.4
ClCG05G006560 Citrullus lanatus HOM05D006900 ORTHO05D008651 4.2e-79 300.1 639 68.2
Lj4g0008712 Lotus japonicus HOM05D006900 ORTHO05D008651 9.4e-79 298.9 585 73.2
VMungo1215G0487 Vigna mungo HOM05D006900 ORTHO05D008651 9.4e-79 298.9 643 67.8
Lalb_Chr07g0182071 Lupinus albus HOM05D006900 ORTHO05D008651 2.7e-78 297.4 597 71.9
Psat0s740g0280 Pisum sativum HOM05D006900 ORTHO05D008651 2.7e-78 297.4 563 74.4
CiPaw.02G075100 Carya illinoinensis HOM05D006900 ORTHO05D008651 3.6e-78 297.0 613 71.0
Nitab4.5_0004979g0030 Nicotiana tabacum HOM05D006900 ORTHO05D008651 4.7e-78 296.6 607 71.3
Haze_01304 Corylus avellana HOM05D006900 ORTHO05D008651 1.0e-77 295.4 640 67.7
Glyma.07G240000 Glycine max HOM05D006900 ORTHO05D008651 6.8e-77 292.7 645 67.0
AUR62016204 Chenopodium quinoa HOM05D006900 ORTHO05D008651 2.0e-76 291.2 523 78.6
Ciclev10004521m.g Citrus clementina HOM05D006900 ORTHO05D008651 4.4e-76 290.0 602 72.6
Glyma.17G033400 Glycine max HOM05D006900 ORTHO05D008651 4.4e-76 290.0 639 67.8
unitig_748.g8700 Utricularia gibba HOM05D006900 ORTHO05D008651 4.4e-76 290.0 553 74.5
CANSAT64G2951 Cannabis sativa HOM05D006900 ORTHO05D008651 7.5e-76 289.3 642 69.3
AUR62039284 Chenopodium quinoa HOM05D006900 ORTHO05D008651 9.8e-76 288.9 523 78.4
Ah.04g156910 Amaranthus hybridus HOM05D006900 ORTHO05D008651 4.8e-75 286.6 655 66.1
MBI18_g32026_MAGBIO Magnolia biondii HOM05D006900 ORTHO05D008651 4.8e-75 286.6 522 78.0
Nitab4.5_0010299g0060 Nicotiana tabacum HOM05D006900 ORTHO05D008651 6.3e-75 286.2 706 50.4
RcHm_v2.0_Chr4g0425111 Rosa chinensis HOM05D006900 ORTHO05D008651 6.3e-75 286.2 624 69.1
PSO170G0176 Papaver somniferum HOM05D006900 ORTHO05D008651 1.4e-74 285.0 537 77.3
CDE12G0762 Ceratophyllum demersum HOM05D006900 ORTHO05D008651 4.1e-74 283.5 575 72.2
FAN07G1219 Fragaria x ananassa HOM05D006900 ORTHO05D008651 4.1e-74 283.5 627 67.6
PSO357G0537 Papaver somniferum HOM05D006900 ORTHO05D008651 5.4e-74 283.1 601 70.4
FvH4_4g19660 Fragaria vesca HOM05D006900 ORTHO05D008651 1.6e-73 281.6 625 67.8
Sc15g0003210 Simmondsia chinensis HOM05D006900 ORTHO05D008651 1.6e-73 281.6 539 77.0
ATR0693G010 Amborella trichopoda HOM05D006900 ORTHO05D008651 2.0e-73 281.2 578 72.7
Aqoxy5G02843 Aquilegia oxysepala HOM05D006900 ORTHO05D008651 5.9e-73 279.6 525 76.6
FAN12G3178 Fragaria x ananassa HOM05D006900 ORTHO05D008651 7.7e-73 279.3 625 68.2
Phvul.003G114100 Phaseolus vulgaris HOM05D006900 ORTHO05D008651 1.5e-71 275.0 520 76.5
EL10Ac3g05503 Beta vulgaris HOM05D006900 ORTHO05D008651 4.2e-71 273.5 541 39.7
Rhsim02G0004000 Rhododendron simsii HOM05D006900 ORTHO05D008651 8.0e-70 269.2 695 41.6
Sed0008833 Sechium edule HOM05D006900 ORTHO05D008651 4.9e-67 260.0 577 71.4
TPR.G16830 Trifolium pratense HOM05D006900 ORTHO05D008651 3.1e-66 257.3 660 54.8
Hund03124 Selenicereus undatus HOM05D006900 ORTHO05D008651 1.9e-63 248.1 598 63.4
vmacro15184 Vaccinium macrocarpon HOM05D006900 ORTHO05D008651 5.6e-63 246.5 661 64.0
Zm00001eb014810 Zea mays HOM05D006900 ORTHO05D008651 4.7e-62 243.4 532 73.3
Hma1.2p1_0013F.1_g008580 Hydrangea macrophylla HOM05D006900 ORTHO05D008651 1.7e-59 235.0 239 57.3
Ca_21442_v3 Cicer arietinum L. HOM05D006900 ORTHO05D008651 4.1e-58 230.3 272 50.0
DCAR_030472 Daucus carota HOM05D006900 ORTHO05D008651 2.7e-57 227.6 632 60.0
CDE01G0483 Ceratophyllum demersum HOM05D006900 ORTHO05D008651 7.8e-57 226.1 221 56.1
SalBow8G4068 Salvia bowleyana HOM05D006900 ORTHO05D008651 3.6e-54 217.2 227 54.6
Os03g0308800 Oryza sativa ssp. japonica HOM05D006900 ORTHO05D008651 3.1e-45 187.6 147 59.2
SEGI_12330 Sequoiadendron giganteum HOM05D006900 ORTHO05D008651 9.9e-44 182.6 471 75.8
Cpa.g.sc9.62 Carica papaya HOM05D006900 ORTHO05D008651 8.9e-37 159.5 167 68.3
Mapoly0078s0010 Marchantia polymorpha HOM05D006900 ORTHO05D008651 1.7e-35 155.2 110 64.5
CANSAT78G0722 Cannabis sativa HOM05D006900 ORTHO05D008651 6.4e-35 153.3 196 44.4
AagrBONN_evm.TU.Sc2ySwM_368.516 Anthoceros agrestis HOM05D006900 ORTHO05D008651 2.7e-33 147.9 110 64.5
Pp3c1_20310 Physcomitrium patens HOM05D006900 ORTHO05D008651 2.1e-30 138.3 110 59.1
SMO115G0152 Selaginella moellendorffii HOM05D006900 ORTHO05D008651 1.5e-28 132.1 110 60.0
Gohir.A10G171950 Gossypium hirsutum HOM05D006900 ORTHO05D008651 1.3e-27 129.0 113 61.1
Gohir.A10G171900 Gossypium hirsutum HOM05D006900 ORTHO05D008651 1.7e-27 128.6 172 47.7
CSS0028196 Camellia sinensis var. sinensis HOM05D006900 ORTHO05D008651 2.4e-26 124.8 80 76.2
CBR_g12177 Chara braunii HOM05D006900 ORTHO05D008651 7.1e-26 123.2 230 35.2
CSS0035140 Camellia sinensis var. sinensis HOM05D006900 ORTHO05D008651 1.6e-25 122.1 80 75.0
Cpa.g.sc9.61 Carica papaya HOM05D006900 ORTHO05D008651 7.8e-25 119.8 189 47.1
MCO01G208 Micromonas commoda HOM05D006900 ORTHO05D008651 2.9e-19 101.3 120 45.0
Cre09.g416200 Chlamydomonas reinhardtii HOM05D006900 ORTHO05D008651 3.2e-18 97.8 123 43.1
Oeu032012.1 Olea europaea HOM05D006900 ORTHO05D008651 1.6e-14 85.5 94 54.3
PRCOL_00006040 Prasinoderma coloniale HOM05D001216 ORTHO05D005688 4.0e-13 80.9 112 37.5
SGA_v2.0_scaffold157G37400 Striga asiatica HOM05D006900 ORTHO05D008651 2.6e-12 78.2 201 33.3
Oeu032144.1 Olea europaea HOM05D006900 ORTHO05D008651 9.9e-12 76.3 73 87.7


User provided reference genes

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