Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR091100 Cardamine hirsuta HOM05D003909 ORTHO05D004478 1.1e-230 803.1 450 100.0
AT3G15970 Arabidopsis thaliana HOM05D003909 ORTHO05D004478 2.7e-165 585.9 467 75.2
AL3G28620 Arabidopsis lyrata HOM05D003909 ORTHO05D004478 9.9e-160 567.4 474 72.2
Sp3g14320 Schrenkiella parvula HOM05D003909 ORTHO05D004478 2.3e-156 556.2 451 71.4
Carub.0003s1570 Capsella rubella HOM05D003909 ORTHO05D004478 1.7e-148 530.0 468 69.0
Thhalv10020773m.g Eutrema salsugineum HOM05D003909 ORTHO05D004478 1.1e-147 527.3 467 69.2
Aa31LG8G3120 Aethionema arabicum HOM05D003909 ORTHO05D004478 2.0e-136 490.0 487 62.2
Carub.0001s4138 Capsella rubella HOM05D003909 ORTHO05D004478 2.6e-112 409.8 463 58.7
AT1G52380 Arabidopsis thaliana HOM05D003909 ORTHO05D004478 5.1e-108 395.6 460 58.0
AL1G60630 Arabidopsis lyrata HOM05D003909 ORTHO05D004478 2.6e-104 383.3 462 56.7
BcaB02g10997 Brassica carinata HOM05D003909 ORTHO05D004478 3.5e-104 382.9 460 57.6
Aa31LG10G2540 Aethionema arabicum HOM05D003909 ORTHO05D004478 1.3e-103 380.9 454 55.5
Sp1g38990 Schrenkiella parvula HOM05D003909 ORTHO05D004478 1.3e-103 380.9 460 55.7
BcaC08g43991 Brassica carinata HOM05D003909 ORTHO05D004478 2.9e-103 379.8 463 55.9
C06p13960 Brassica napus HOM05D003909 ORTHO05D004478 2.9e-103 379.8 463 55.9
BolC6t36574H Brassica oleracea HOM05D001315 ORTHO05D001618 2.9e-103 379.8 463 55.9
CARHR042530 Cardamine hirsuta HOM05D003909 ORTHO05D004478 6.1e-101 372.1 451 56.5
Thhalv10011504m.g Eutrema salsugineum HOM05D003909 ORTHO05D004478 3.3e-99 366.3 451 57.6
A05p19040 Brassica napus HOM05D003909 ORTHO05D004478 9.7e-99 364.8 461 56.6
BraA05t20804Z Brassica rapa HOM05D003909 ORTHO05D004478 9.7e-99 364.8 461 56.6
THA.LOC104810518 Tarenaya hassleriana HOM05D003909 ORTHO05D004478 2.8e-98 363.2 470 52.6
C06p07830 Brassica napus HOM05D003909 ORTHO05D004478 2.2e-95 353.6 454 52.4
BolC6t35869H Brassica oleracea HOM05D003909 ORTHO05D004478 2.9e-95 353.2 454 52.9
A06p01850 Brassica napus HOM05D003909 ORTHO05D004478 2.3e-92 343.6 451 51.9
BraA06t23402Z Brassica rapa HOM05D003909 ORTHO05D004478 3.0e-92 343.2 453 54.1
THA.LOC104818004 Tarenaya hassleriana HOM05D003909 ORTHO05D004478 3.0e-92 343.2 465 52.5
Dinv30518 Davidia involucrata HOM05D003909 ORTHO05D004478 1.2e-91 341.3 471 48.4
Rhsim12G0197200 Rhododendron simsii HOM05D003909 ORTHO05D004478 8.3e-90 335.1 449 48.6
Thecc.06G085100 Theobroma cacao HOM05D003909 ORTHO05D004478 8.3e-90 335.1 481 48.9
CSS0044508 Camellia sinensis var. sinensis HOM05D003909 ORTHO05D004478 1.1e-89 334.7 446 48.0
Peaxi162Scf00015g10039 Petunia axillaris HOM05D003909 ORTHO05D004478 1.1e-89 334.7 486 47.3
Lj5C61T11 Lonicera japonica HOM05D003909 ORTHO05D004478 9.1e-89 331.6 464 47.4
Lj9P507T43 Lonicera japonica HOM05D003909 ORTHO05D004478 2.0e-88 330.5 456 46.9
Actinidia08971 Actinidia chinensis HOM05D003909 ORTHO05D004478 7.7e-88 328.6 452 48.5
CAN.G395.16 Capsicum annuum HOM05D003909 ORTHO05D004478 5.0e-87 325.9 470 48.1
Ciclev10025626m.g Citrus clementina HOM05D003909 ORTHO05D004478 4.2e-86 322.8 455 49.0
Manes.11G048200 Manihot esculenta HOM05D003909 ORTHO05D004478 4.2e-86 322.8 472 46.6
Nitab4.5_0002327g0010 Nicotiana tabacum HOM05D003909 ORTHO05D004478 7.2e-86 322.0 474 48.7
MD09G1214400 Malus domestica HOM05D003909 ORTHO05D004478 1.2e-85 321.2 457 47.7
PGSC0003DMG400002641 Solanum tuberosum HOM05D003909 ORTHO05D004478 1.6e-85 320.9 469 46.7
Nitab4.5_0000351g0150 Nicotiana tabacum HOM05D003909 ORTHO05D004478 2.1e-85 320.5 481 49.1
QL05p024883 Quercus lobata HOM05D003909 ORTHO05D004478 4.7e-85 319.3 458 47.6
QL05p024997 Quercus lobata HOM05D003909 ORTHO05D004478 4.7e-85 319.3 458 47.6
TAR626G0719 Trochodendron aralioides HOM05D003909 ORTHO05D004478 1.0e-84 318.2 461 49.5
Dinv38052 Davidia involucrata HOM05D003909 ORTHO05D004478 1.8e-84 317.4 464 47.2
Sopen03g039170 Solanum pennellii HOM05D003909 ORTHO05D004478 4.0e-84 316.2 471 45.2
BcaC01g03847 Brassica carinata HOM05D003909 ORTHO05D004478 5.2e-84 315.8 448 51.6
C03p47980 Brassica napus HOM05D003909 ORTHO05D004478 5.2e-84 315.8 448 51.6
Duzib160G0939 Durio zibethinus HOM05D003909 ORTHO05D004478 5.2e-84 315.8 483 46.2
Cc04_g03530 Coffea canephora HOM05D003909 ORTHO05D004478 6.8e-84 315.5 459 46.4
Prupe.3G072500 Prunus persica HOM05D003909 ORTHO05D004478 8.8e-84 315.1 462 46.1
vmacro18921 Vaccinium macrocarpon HOM05D003909 ORTHO05D004478 8.8e-84 315.1 453 47.5
Solyc03g120280.1 Solanum lycopersicum HOM05D003909 ORTHO05D004478 1.2e-83 314.7 466 44.4
BolC3t17078H Brassica oleracea HOM05D003909 ORTHO05D004478 1.5e-83 314.3 448 51.3
Aqoxy7G01805 Aquilegia oxysepala HOM05D003909 ORTHO05D004478 5.7e-83 312.4 474 45.8
Actinidia01799 Actinidia chinensis HOM05D001315 ORTHO05D001618 7.5e-83 312.0 457 47.9
CiPaw.02G151900 Carya illinoinensis HOM05D003909 ORTHO05D004478 2.2e-82 310.5 457 45.3
Eucgr.F02948 Eucalyptus grandis HOM05D003909 ORTHO05D004478 2.2e-82 310.5 459 47.7
Nitab4.5_0006801g0020 Nicotiana tabacum HOM05D003909 ORTHO05D004478 2.2e-82 310.5 483 45.1
CiPaw.01G240200 Carya illinoinensis HOM05D003909 ORTHO05D004478 2.8e-82 310.1 458 45.4
Sopen06g025020 Solanum pennellii HOM05D003909 ORTHO05D004478 6.3e-82 308.9 473 45.2
MELO3C024224.2 Cucumis melo HOM05D003909 ORTHO05D004478 1.1e-81 308.1 491 44.6
Duzib192G0576 Durio zibethinus HOM05D003909 ORTHO05D004478 1.4e-81 307.8 478 45.2
Ah.01g006030 Amaranthus hybridus HOM05D003909 ORTHO05D004478 2.4e-81 307.0 456 46.1
MD17G1196800 Malus domestica HOM05D003909 ORTHO05D004478 2.4e-81 307.0 458 46.5
Hma1.2p1_0682F.1_g202710 Hydrangea macrophylla HOM05D003909 ORTHO05D004478 3.1e-81 306.6 466 45.7
Sabra01G0147800 Salix brachista HOM05D003909 ORTHO05D004478 7.0e-81 305.4 496 43.8
TAR636G1173 Trochodendron aralioides HOM05D003909 ORTHO05D004478 7.0e-81 305.4 467 46.7
ECA247G1970 Erigeron canadensis HOM05D003909 ORTHO05D004478 1.6e-80 304.3 448 46.4
CsaV3_7G033090 Cucumis sativus L. HOM05D003909 ORTHO05D004478 2.7e-80 303.5 493 44.0
CAN.G438.59 Capsicum annuum HOM05D003909 ORTHO05D004478 4.5e-80 302.8 471 44.4
Gorai.002G058700 Gossypium raimondii HOM05D003909 ORTHO05D004478 5.9e-80 302.4 463 49.2
Lsat_1_v5_gn_1_34841 Lactuca sativa HOM05D003909 ORTHO05D004478 5.9e-80 302.4 448 46.0
AUR62016436 Chenopodium quinoa HOM05D003909 ORTHO05D004478 7.7e-80 302.0 450 47.3
TAR383G0140 Trochodendron aralioides HOM05D003909 ORTHO05D004478 7.7e-80 302.0 472 47.0
AUR62011621 Chenopodium quinoa HOM05D003909 ORTHO05D004478 1.7e-79 300.8 450 47.1
FvH4_6g31000 Fragaria vesca HOM05D003909 ORTHO05D004478 2.3e-79 300.4 464 45.5
ClCG09G002210 Citrullus lanatus HOM05D003909 ORTHO05D004478 3.8e-79 299.7 506 44.9
Actinidia32764 Actinidia chinensis HOM05D003909 ORTHO05D004478 6.6e-79 298.9 458 46.9
MSTRG.22695 Avicennia marina HOM05D003909 ORTHO05D004478 6.6e-79 298.9 499 42.3
Nitab4.5_0000671g0020 Nicotiana tabacum HOM05D003909 ORTHO05D004478 6.6e-79 298.9 467 44.5
ATR1120G115 Amborella trichopoda HOM05D003909 ORTHO05D004478 1.1e-78 298.1 472 46.8
COL.COLO4_30356 Corchorus olitorius HOM05D003909 ORTHO05D004478 1.1e-78 298.1 466 46.6
Atru.chr1.3248 Acer truncatum HOM05D003909 ORTHO05D004478 2.5e-78 297.0 476 45.8
Haze_16447 Corylus avellana HOM05D003909 ORTHO05D004478 4.2e-78 296.2 449 46.5
HanXRQChr10g0314961 Helianthus annuus HOM05D003909 ORTHO05D004478 5.5e-78 295.8 455 45.5
Gohir.D03G074300 Gossypium hirsutum HOM05D003909 ORTHO05D004478 7.2e-78 295.4 458 47.6
CSS0004276 Camellia sinensis var. sinensis HOM05D003909 ORTHO05D004478 2.1e-77 293.9 466 45.3
MBI04_g18158_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 2.1e-77 293.9 455 48.4
HanXRQChr02g0032691 Helianthus annuus HOM05D003909 ORTHO05D004478 3.6e-77 293.1 450 45.1
PSO063G3399 Papaver somniferum HOM05D003909 ORTHO05D004478 3.6e-77 293.1 463 45.1
PSO782G4639 Papaver somniferum HOM05D003909 ORTHO05D004478 6.1e-77 292.4 463 44.9
MSTRG.4728 Avicennia marina HOM05D003909 ORTHO05D004478 1.0e-76 291.6 481 43.5
Manes.04G122500 Manihot esculenta HOM05D003909 ORTHO05D004478 1.0e-76 291.6 461 45.1
Cpa.g.c31444.1 Carica papaya HOM05D003909 ORTHO05D004478 1.4e-76 291.2 508 42.5
Cfa002057 Carpinus fangiana HOM05D003909 ORTHO05D004478 8.9e-76 288.5 450 46.4
PGR102G2609 Punica granatum HOM05D003909 ORTHO05D004478 8.9e-76 288.5 470 43.8
Potri.001G179100 Populus trichocarpa HOM05D003909 ORTHO05D004478 1.5e-75 287.7 502 42.0
SEGI_39159 Sequoiadendron giganteum HOM05D003909 ORTHO05D004478 2.0e-75 287.3 484 44.0
Lj3g0018129 Lotus japonicus HOM05D003909 ORTHO05D004478 3.4e-75 286.6 460 44.3
EL10Ac9g21982 Beta vulgaris HOM05D003909 ORTHO05D004478 5.7e-75 285.8 452 45.6
Rhsim08G0220400 Rhododendron simsii HOM05D003909 ORTHO05D004478 7.5e-75 285.4 423 46.6
FAN05G4496 Fragaria x ananassa HOM05D003909 ORTHO05D004478 9.8e-75 285.0 462 44.6
SGA_v2.0_scaffold5G02599 Striga asiatica HOM05D003909 ORTHO05D004478 1.3e-74 284.6 454 45.6
Phvul.005G172100 Phaseolus vulgaris HOM05D003909 ORTHO05D004478 2.8e-74 283.5 476 44.3
Sc15g0001250 Simmondsia chinensis HOM05D003909 ORTHO05D004478 3.7e-74 283.1 455 44.2
FAN02G1452 Fragaria x ananassa HOM05D003909 ORTHO05D004478 1.1e-73 281.6 462 44.2
arahy.Tifrunner.gnm1.ann1.63P8XR Arachis hypogaea HOM05D003909 ORTHO05D004478 1.8e-73 280.8 473 43.6
Gohir.A02G122200 Gossypium hirsutum HOM05D003909 ORTHO05D004478 1.8e-73 280.8 462 46.3
CANSAT56G2173 Cannabis sativa HOM05D003909 ORTHO05D004478 2.4e-73 280.4 469 43.1
Solyc06g066740.3 Solanum lycopersicum HOM05D003909 ORTHO05D004478 5.4e-73 279.3 476 43.1
Migut.I00858 Erythranthe guttata HOM05D003909 ORTHO05D004478 9.2e-73 278.5 471 42.9
Ah.01g021220 Amaranthus hybridus HOM05D003909 ORTHO05D004478 1.2e-72 278.1 458 46.9
VMungo1080G0623 Vigna mungo HOM05D003909 ORTHO05D004478 1.6e-72 277.7 478 43.5
Potri.003G056400 Populus trichocarpa HOM05D003909 ORTHO05D004478 2.7e-72 276.9 529 39.7
Sabra03G0031800 Salix brachista HOM05D003909 ORTHO05D004478 3.5e-72 276.6 502 40.8
Sed0010123 Sechium edule HOM05D003909 ORTHO05D004478 3.5e-72 276.6 493 41.8
unitig_21.g20517 Utricularia gibba HOM05D003909 ORTHO05D004478 3.5e-72 276.6 457 44.0
Hma1.2p1_0323F.1_g125230 Hydrangea macrophylla HOM05D003909 ORTHO05D004478 5.9e-72 275.8 459 43.6
TWI75G1291 Tripterygium wilfordii HOM05D003909 ORTHO05D004478 5.9e-72 275.8 461 45.3
PGSC0003DMG400016510 Solanum tuberosum HOM05D003909 ORTHO05D004478 2.3e-71 273.9 474 43.0
TWI18G1146 Tripterygium wilfordii HOM05D003909 ORTHO05D004478 3.9e-71 273.1 472 44.5
GSVIVG01017123001 Vitis vinifera HOM05D003909 ORTHO05D004478 3.9e-71 273.1 448 43.3
Sed0003438 Sechium edule HOM05D003909 ORTHO05D004478 5.0e-71 272.7 487 42.5
Glyma.15G013600 Glycine max HOM05D003909 ORTHO05D004478 4.3e-70 269.6 470 42.6
Medtr4g011930 Medicago truncatula HOM05D003909 ORTHO05D004478 1.4e-68 264.6 476 41.8
SalBow2G1612 Salvia bowleyana HOM05D003909 ORTHO05D004478 5.2e-68 262.7 389 44.5
Glyma.13G360300 Glycine max HOM05D003909 ORTHO05D004478 2.0e-67 260.8 471 42.0
MBI01_g16632_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 5.8e-67 259.2 437 44.6
Oeu033481.1 Olea europaea HOM05D003909 ORTHO05D004478 2.2e-66 257.3 465 42.2
Lalb_Chr24g0395791 Lupinus albus HOM05D003909 ORTHO05D004478 2.9e-66 256.9 456 43.2
BcaC08g43418 Brassica carinata HOM05D003909 ORTHO05D004478 4.9e-66 256.1 453 43.9
Ca_20399_v3 Cicer arietinum L. HOM05D003909 ORTHO05D004478 1.9e-65 254.2 460 41.3
Os05g0349500 Oryza sativa ssp. japonica HOM05D003909 ORTHO05D004478 3.2e-65 253.4 497 40.6
DCAR_026310 Daucus carota HOM05D003909 ORTHO05D004478 7.0e-65 252.3 472 40.7
Lalb_Chr22g0351201 Lupinus albus HOM05D003909 ORTHO05D004478 2.0e-64 250.8 450 43.3
TPR.G24152 Trifolium pratense HOM05D003909 ORTHO05D004478 3.9e-63 246.5 462 40.9
HPP92_019977 Vanilla planifolia HOM05D003909 ORTHO05D004478 3.9e-63 246.5 464 44.8
HanXRQChr04g0096531 Helianthus annuus HOM05D003909 ORTHO05D004478 1.5e-62 244.6 477 39.6
Nn8g39239 Nelumbo nucifera HOM05D003909 ORTHO05D004478 1.5e-62 244.6 240 57.9
Lalb_Chr14g0373481 Lupinus albus HOM05D003909 ORTHO05D004478 8.0e-61 238.8 460 40.9
RcHm_v2.0_Chr2g0137631 Rosa chinensis HOM05D003909 ORTHO05D004478 2.0e-59 234.2 444 40.1
Psat7g253000 Pisum sativum HOM05D003909 ORTHO05D004478 1.3e-58 231.5 462 38.3
Nn2g11803 Nelumbo nucifera HOM05D003909 ORTHO05D004478 1.1e-57 228.4 251 53.4
Mapoly0073s0079 Marchantia polymorpha HOM05D003909 ORTHO05D004478 2.1e-53 214.2 501 37.5
Zm00001eb360880 Zea mays HOM05D003909 ORTHO05D004478 3.1e-52 210.3 464 38.4
BcaC08g43420 Brassica carinata HOM05D003909 ORTHO05D004478 1.2e-48 198.4 156 67.3
Zm00001eb155830 Zea mays HOM05D003909 ORTHO05D004478 1.6e-48 198.0 474 37.1
SEGI_02359 Sequoiadendron giganteum HOM05D003909 ORTHO05D004478 1.0e-47 195.3 483 35.6
MBI04_g40091_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 1.7e-42 177.9 354 42.1
SMO351G0411 Selaginella moellendorffii HOM05D003848 ORTHO05D004616 1.4e-41 174.9 476 35.3
SHI24405 Sapria himalayana HOM05D003909 ORTHO05D004478 4.2e-41 173.3 452 33.8
CDE06G1609 Ceratophyllum demersum HOM05D003909 ORTHO05D004478 2.3e-39 167.5 362 41.2
AagrBONN_evm.TU.Sc2ySwM_228.3069 Anthoceros agrestis HOM05D003909 ORTHO05D004478 1.8e-36 157.9 469 35.2
unitig_744.g24336 Utricularia gibba HOM05D003909 ORTHO05D004478 1.9e-33 147.9 348 37.1
Pp3c3_6080 Physcomitrium patens HOM05D003909 ORTHO05D004478 3.2e-33 147.1 472 33.5
A06p01830 Brassica napus HOM05D003909 ORTHO05D004478 4.6e-32 143.3 104 73.1
Actinidia14363 Actinidia chinensis HOM05D003909 ORTHO05D004478 4.8e-29 133.3 86 75.6
A03p39600 Brassica napus HOM05D003909 ORTHO05D004478 2.4e-28 131.0 438 34.7
MBI04_g43353_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 1.5e-27 128.3 174 45.4
BraA06t23400Z Brassica rapa HOM05D003909 ORTHO05D004478 5.4e-25 119.8 93 72.0
C06p07870 Brassica napus HOM05D003909 ORTHO05D004478 2.0e-19 101.3 126 52.4
BolC6t35871H Brassica oleracea HOM05D003909 ORTHO05D004478 2.0e-19 101.3 140 49.3
BcaC01g01324 Brassica carinata HOM05D003909 ORTHO05D004478 3.4e-19 100.5 123 49.6
Medtr1g112060 Medicago truncatula HOM05D003909 ORTHO05D004478 6.7e-15 86.3 91 58.2
C03p90640 Brassica napus HOM05D003909 ORTHO05D004478 2.8e-13 80.9 145 42.8
unitig_744.g24337 Utricularia gibba HOM05D003909 ORTHO05D004478 2.4e-12 77.8 72 52.8
MCO12G345 Micromonas commoda HOM05D003909 ORTHO05D004478 3.1e-12 77.4 280 30.0
CBR_g38869 Chara braunii HOM05D003909 ORTHO05D004478 5.3e-12 76.6 483 26.3
Psat4g143640 Pisum sativum HOM05D002956 ORTHO05D008031 5.3e-12 76.6 113 46.9
HPP92_020042 Vanilla planifolia HOM05D003909 ORTHO05D004478 6.9e-12 76.3 124 49.2
arahy.Tifrunner.gnm1.ann1.HH7TIC Arachis hypogaea HOM05D003909 ORTHO05D004478 1.2e-11 75.5 89 55.1
BolC3t21386H Brassica oleracea HOM05D001315 ORTHO05D001618 1.2e-11 75.5 176 38.1
Cre15.g641000 Chlamydomonas reinhardtii HOM05D003909 ORTHO05D004478 6.5e-10 69.7 86 41.9
FAN09G3670 Fragaria x ananassa HOM05D003909 ORTHO05D004478 3.3e-06 57.4 52 63.5


User provided reference genes

Program Settings