Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR088980 Cardamine hirsuta HOM05D001849 ORTHO05D004689 1.5e-311 1072.0 543 100.0
AT3G14120 Arabidopsis thaliana HOM05D001849 ORTHO05D004689 1.0e-272 943.0 496 96.0
Carub.0003s1373 Capsella rubella HOM05D001849 ORTHO05D004689 4.4e-271 937.6 496 95.4
AL3G26350 Arabidopsis lyrata HOM05D001849 ORTHO05D004689 7.5e-271 936.8 496 95.6
Thhalv10019957m.g Eutrema salsugineum HOM05D001849 ORTHO05D004689 2.5e-266 921.8 496 93.5
C05p53520 Brassica napus HOM05D001849 ORTHO05D004689 3.0e-264 914.8 496 93.3
BolC5t34029H Brassica oleracea HOM05D001849 ORTHO05D004689 3.0e-264 914.8 496 93.3
Sp3g12380 Schrenkiella parvula HOM05D001849 ORTHO05D004689 2.6e-263 911.8 496 92.9
BcaC05g29121 Brassica carinata HOM05D001849 ORTHO05D004689 3.4e-263 911.4 496 93.1
C01p50480 Brassica napus HOM05D001849 ORTHO05D004689 2.2e-262 908.7 505 91.5
A05p35330 Brassica napus HOM05D001849 ORTHO05D004689 1.1e-261 906.4 496 92.5
BolC1t05000H Brassica oleracea HOM05D001849 ORTHO05D004689 1.1e-261 906.4 509 90.8
Aa31LG8G1350 Aethionema arabicum HOM05D001849 ORTHO05D004689 2.8e-257 891.7 496 89.9
BraA05t22343Z Brassica rapa HOM05D001849 ORTHO05D004689 1.4e-253 879.4 534 85.6
THA.LOC104822664 Tarenaya hassleriana HOM05D001849 ORTHO05D004689 1.9e-253 879.0 496 87.9
BraA01t03995Z Brassica rapa HOM05D001849 ORTHO05D004689 5.4e-253 877.5 514 88.7
Manes.11G016400 Manihot esculenta HOM05D001849 ORTHO05D004689 3.9e-227 791.6 498 78.9
CiPaw.01G216000 Carya illinoinensis HOM05D001849 ORTHO05D004689 5.6e-226 787.7 516 76.6
QL05p003662 Quercus lobata HOM05D001849 ORTHO05D004689 2.4e-224 782.3 516 75.6
Cfa003503 Carpinus fangiana HOM05D001849 ORTHO05D004689 2.2e-222 775.8 515 76.1
Ciclev10027090m.g Citrus clementina HOM05D001849 ORTHO05D004689 2.4e-221 772.3 498 76.9
Prupe.3G037400 Prunus persica HOM05D001849 ORTHO05D004689 2.7e-220 768.8 499 77.8
MD17G1148600 Malus domestica HOM05D001849 ORTHO05D004689 1.0e-219 766.9 499 76.4
Potri.001G165900 Populus trichocarpa HOM05D001849 ORTHO05D004689 8.7e-219 763.8 498 76.1
Sabra01G0127400 Salix brachista HOM05D001849 ORTHO05D004689 3.3e-218 761.9 498 75.9
Dinv20408 Davidia involucrata HOM05D001849 ORTHO05D004689 4.3e-218 761.5 499 76.2
MD09G1178100 Malus domestica HOM05D001849 ORTHO05D004689 9.6e-218 760.4 499 76.0
Atru.chr2.1505 Acer truncatum HOM05D001849 ORTHO05D004689 3.6e-217 758.4 498 75.7
CSS0036951 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 1.2e-215 753.4 499 76.4
Thecc.06G124800 Theobroma cacao HOM05D001849 ORTHO05D004689 3.4e-215 751.9 512 74.4
Duzib192G0006 Durio zibethinus HOM05D001849 ORTHO05D004689 4.5e-215 751.5 512 74.0
FAN02G0489 Fragaria x ananassa HOM05D001849 ORTHO05D004689 1.3e-214 750.0 498 75.1
Gohir.D09G079550 Gossypium hirsutum HOM05D001849 ORTHO05D004689 1.3e-214 750.0 512 73.8
FvH4_6g35170 Fragaria vesca HOM05D001849 ORTHO05D004689 2.9e-214 748.8 498 75.7
FAN05G2930 Fragaria x ananassa HOM05D001849 ORTHO05D004689 4.9e-214 748.0 498 75.3
Gorai.006G094800 Gossypium raimondii HOM05D001849 ORTHO05D004689 6.4e-214 747.7 512 73.6
Gohir.A09G079900 Gossypium hirsutum HOM05D001849 ORTHO05D004689 1.1e-213 746.9 512 73.4
Duzib235G0671 Durio zibethinus HOM05D001849 ORTHO05D004689 4.2e-213 745.0 515 73.6
COL.COLO4_30797 Corchorus olitorius HOM05D001849 ORTHO05D004689 7.1e-213 744.2 512 73.8
GSVIVG01016717001 Vitis vinifera HOM05D001849 ORTHO05D004689 1.2e-212 743.4 516 73.3
TAR626G0833 Trochodendron aralioides HOM05D001849 ORTHO05D004689 3.5e-212 741.9 516 72.3
CSS0020628 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 4.6e-212 741.5 499 74.7
Sopen12g023890 Solanum pennellii HOM05D001849 ORTHO05D004689 1.0e-211 740.3 499 73.1
RcHm_v2.0_Chr2g0146431 Rosa chinensis HOM05D001849 ORTHO05D004689 3.0e-211 738.8 500 75.2
Solyc12g049410.3 Solanum lycopersicum HOM05D001849 ORTHO05D004689 3.0e-211 738.8 499 73.1
TWI59G1440 Tripterygium wilfordii HOM05D001849 ORTHO05D004689 5.1e-211 738.0 498 71.7
FAN14G1459 Fragaria x ananassa HOM05D001849 ORTHO05D004689 6.7e-211 737.6 521 72.4
Eucgr.K02038 Eucalyptus grandis HOM05D001849 ORTHO05D004689 2.5e-210 735.7 499 73.5
CAN.G1243.9 Capsicum annuum HOM05D001849 ORTHO05D004689 2.8e-209 732.3 500 72.2
Cc04_g01040 Coffea canephora HOM05D001849 ORTHO05D004689 1.1e-208 730.3 499 72.9
Lj3g0004011 Lotus japonicus HOM05D001849 ORTHO05D004689 3.4e-207 725.3 499 73.1
PGR119G1999 Punica granatum HOM05D001849 ORTHO05D004689 7.6e-207 724.2 504 72.2
Nitab4.5_0004322g0010 Nicotiana tabacum HOM05D001849 ORTHO05D004689 1.3e-206 723.4 499 71.7
Nitab4.5_0000189g0010 Nicotiana tabacum HOM05D001849 ORTHO05D004689 1.1e-205 720.3 499 70.9
MBI13_g01700_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004689 1.9e-205 719.5 500 73.2
vmacro15054 Vaccinium macrocarpon HOM05D001849 ORTHO05D004689 2.5e-205 719.2 516 70.0
TPR.G29992 Trifolium pratense HOM05D001849 ORTHO05D004689 1.3e-203 713.4 499 71.5
Psat4g166880 Pisum sativum HOM05D001849 ORTHO05D004689 3.9e-203 711.8 514 69.6
EL10Ac7g16444 Beta vulgaris HOM05D001849 ORTHO05D004689 1.3e-201 706.8 514 68.3
VMungo0331G1611 Vigna mungo HOM05D001849 ORTHO05D004689 1.4e-200 703.4 499 71.1
Peaxi162Scf00177g00518 Petunia axillaris HOM05D001849 ORTHO05D004689 6.9e-200 701.0 499 70.1
Hund18672 Selenicereus undatus HOM05D001849 ORTHO05D004689 6.9e-200 701.0 499 70.9
Glyma.07G042000 Glycine max HOM05D001849 ORTHO05D004689 9.0e-200 700.7 499 71.3
Medtr8g022010 Medicago truncatula HOM05D001849 ORTHO05D004689 1.2e-199 700.3 501 70.3
DCAR_026423 Daucus carota HOM05D001849 ORTHO05D004689 2.0e-199 699.5 499 69.3
arahy.Tifrunner.gnm1.ann1.1RN2YG Arachis hypogaea HOM05D001849 ORTHO05D004689 3.4e-199 698.7 486 71.2
Phvul.010G127100 Phaseolus vulgaris HOM05D001849 ORTHO05D004689 7.6e-199 697.6 499 71.1
Lalb_Chr10g0101321 Lupinus albus HOM05D001849 ORTHO05D004689 1.0e-198 697.2 505 70.1
arahy.Tifrunner.gnm1.ann1.RMM65D Arachis hypogaea HOM05D001849 ORTHO05D004689 1.7e-198 696.4 523 68.5
CANSAT56G0878 Cannabis sativa HOM05D001849 ORTHO05D004689 6.5e-198 694.5 499 71.1
Aqoxy7G04006 Aquilegia oxysepala HOM05D001849 ORTHO05D004689 8.4e-198 694.1 500 69.0
Lj9C535G6 Lonicera japonica HOM05D001849 ORTHO05D004689 1.1e-197 693.7 497 70.4
ECA232G2821 Erigeron canadensis HOM05D001849 ORTHO05D004689 3.2e-197 692.2 502 69.7
PSO724G1390 Papaver somniferum HOM05D001849 ORTHO05D004689 7.1e-197 691.0 517 68.5
Sed0016273 Sechium edule HOM05D001849 ORTHO05D004689 2.7e-196 689.1 499 69.3
PSO386G0179 Papaver somniferum HOM05D001849 ORTHO05D004689 3.0e-195 685.6 517 68.1
CsaV3_7G034250 Cucumis sativus L. HOM05D001849 ORTHO05D004689 8.7e-195 684.1 499 68.3
AUR62001443 Chenopodium quinoa HOM05D001849 ORTHO05D004689 3.3e-194 682.2 497 68.2
SalBow7G1889 Salvia bowleyana HOM05D001849 ORTHO05D004689 5.7e-194 681.4 499 68.5
AUR62009922 Chenopodium quinoa HOM05D001849 ORTHO05D004689 2.2e-193 679.5 497 68.2
SGA_v2.0_scaffold4G02078 Striga asiatica HOM05D001849 ORTHO05D004689 2.2e-193 679.5 504 68.8
ClCG09G001140 Citrullus lanatus HOM05D001849 ORTHO05D004689 1.5e-191 673.3 499 67.7
HanXRQChr09g0277131 Helianthus annuus HOM05D001849 ORTHO05D004689 7.2e-189 664.5 507 66.5
Haze_16076 Corylus avellana HOM05D001849 ORTHO05D004689 1.2e-188 663.7 549 65.4
FAN09G4066 Fragaria x ananassa HOM05D001849 ORTHO05D004689 1.8e-187 659.8 498 68.7
Lsat_1_v5_gn_4_91381 Lactuca sativa HOM05D001849 ORTHO05D004689 2.3e-187 659.4 505 65.3
A01p39550 Brassica napus HOM05D001849 ORTHO05D004689 3.0e-187 659.1 351 94.6
MELO3C024334.2 Cucumis melo HOM05D001849 ORTHO05D004689 4.8e-185 651.7 521 64.5
ATR0681G401 Amborella trichopoda HOM05D001849 ORTHO05D004689 3.6e-180 635.6 519 62.4
HPP92_022009 Vanilla planifolia HOM05D001849 ORTHO05D004689 3.6e-180 635.6 501 65.1
CDE07G1134 Ceratophyllum demersum HOM05D001849 ORTHO05D004689 3.7e-177 625.5 500 63.6
CDE06G0404 Ceratophyllum demersum HOM05D001849 ORTHO05D004689 2.0e-175 619.8 501 63.1
Rhsim08G0241300 Rhododendron simsii HOM05D001849 ORTHO05D004689 5.0e-174 615.1 507 63.7
unitig_578.g16691 Utricularia gibba HOM05D001849 ORTHO05D004689 4.2e-173 612.1 499 61.9
Zm00001eb165950 Zea mays HOM05D001849 ORTHO05D004689 4.4e-162 575.5 513 60.8
CSS0003623 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 2.9e-158 562.8 453 66.2
CSS0050059 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 4.0e-155 552.4 405 70.6
Os11g0643700 Oryza sativa ssp. japonica HOM05D001849 ORTHO05D004689 4.0e-155 552.4 453 63.4
Ca_23412_v3 Cicer arietinum L. HOM05D001849 ORTHO05D004689 1.3e-153 547.4 395 71.1
Actinidia32206 Actinidia chinensis HOM05D001849 ORTHO05D004689 6.3e-153 545.0 514 57.0
Oeu008524.4 Olea europaea HOM05D001849 ORTHO05D004689 1.8e-152 543.5 583 52.8
Hma1.2p1_0229F.1_g096770 Hydrangea macrophylla HOM05D001849 ORTHO05D004689 2.4e-144 516.5 360 71.9
Migut.D00924 Erythranthe guttata HOM05D001849 ORTHO05D004689 2.0e-138 496.9 360 68.6
Cpa.g.sc169.27 Carica papaya HOM05D001849 ORTHO05D004689 8.6e-134 481.5 318 74.2
Mapoly0024s0112 Marchantia polymorpha HOM05D001849 ORTHO05D004689 1.8e-131 473.8 505 49.7
AagrBONN_evm.TU.Sc2ySwM_362.2383 Anthoceros agrestis HOM05D001849 ORTHO05D004689 4.1e-128 462.6 506 49.6
SHI25232 Sapria himalayana HOM05D001849 ORTHO05D004689 3.6e-124 449.5 357 62.5
Pp3c8_15880 Physcomitrium patens HOM05D001849 ORTHO05D004689 3.2e-120 436.4 528 45.8
SEGI_21815 Sequoiadendron giganteum HOM05D001849 ORTHO05D004689 3.6e-108 396.4 361 56.5
SMO304G0023 Selaginella moellendorffii HOM05D001849 ORTHO05D004689 1.1e-101 374.8 501 42.9
Cpa.g.sc169.28 Carica papaya HOM05D001849 ORTHO05D004689 1.8e-78 297.7 182 77.5
QL11p014752 Quercus lobata HOM05D001849 ORTHO05D004689 1.9e-72 277.7 290 51.0
Hma1.2p1_0229F.1_g096760 Hydrangea macrophylla HOM05D001849 ORTHO05D004689 4.2e-72 276.6 180 73.3
CSS0033574 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 7.0e-59 232.6 189 64.6
CBR_g39720 Chara braunii HOM05D001849 ORTHO05D004689 1.6e-58 231.5 557 32.3
Glyma.16G010300 Glycine max HOM05D001849 ORTHO05D004689 2.8e-52 210.7 141 74.5
CSS0020573 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 6.3e-52 209.5 197 55.8
CSS0047517 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 3.1e-51 207.2 174 66.7
HPP92_021920 Vanilla planifolia HOM05D001849 ORTHO05D004689 2.7e-47 194.1 145 66.2
CSS0019722 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 1.2e-45 188.7 192 58.9
SEGI_09459 Sequoiadendron giganteum HOM05D001849 ORTHO05D004689 9.4e-40 169.1 166 53.6
Lsat_1_v5_gn_8_46020 Lactuca sativa HOM05D001849 ORTHO05D004689 6.8e-30 136.3 95 70.5
Ca_23411_v3 Cicer arietinum L. HOM05D001849 ORTHO05D004689 1.3e-28 132.1 85 71.8
HanXRQChr11g0341991 Helianthus annuus HOM05D001849 ORTHO05D004689 8.6e-25 119.4 90 65.6
BcaNung06672 Brassica carinata HOM05D001849 ORTHO05D004689 8.9e-14 82.8 188 34.6
Zm00001eb307710 Zea mays HOM05D001849 ORTHO05D004689 1.9e-11 75.1 70 60.0
Lsat_1_v5_gn_7_52500 Lactuca sativa HOM05D001849 ORTHO05D004689 1.7e-09 68.6 63 47.6
CSS0002239 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 1.5e-08 65.5 44 70.5
BolC2t10453H Brassica oleracea HOM05D001849 ORTHO05D004689 5.6e-08 63.5 33 90.9
C01p30760 Brassica napus HOM05D001849 ORTHO05D042635 7.3e-08 63.2 171 33.9
CSS0017686 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 6.2e-07 60.1 41 70.7
Lsat_1_v5_gn_3_42421 Lactuca sativa HOM05D001849 ORTHO05D004689 6.2e-07 60.1 37 64.9
C02p44100 Brassica napus HOM05D001849 ORTHO05D004689 2.3e-06 58.2 33 84.8


User provided reference genes

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