Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR078040 Cardamine hirsuta HOM05D004151 ORTHO05D004775 4.2e-85 318.2 180 100.0
BolC1t05799H Brassica oleracea HOM05D004151 ORTHO05D004775 3.7e-57 225.3 168 73.8
AL3G13810 Arabidopsis lyrata HOM05D004151 ORTHO05D004775 1.4e-56 223.4 197 72.1
AT3G03920 Arabidopsis thaliana HOM05D004151 ORTHO05D004775 1.4e-56 223.4 169 73.4
A01p41270 Brassica napus HOM05D004151 ORTHO05D004775 4.1e-56 221.9 167 71.3
BNapus_Darmor_BZH_scaffold_78p00440 Brassica napus HOM05D004151 ORTHO05D004775 4.1e-56 221.9 167 71.3
Thhalv10014755m.g Eutrema salsugineum HOM05D004151 ORTHO05D004775 4.1e-56 221.9 144 80.6
Carub.0003s0316 Capsella rubella HOM05D004151 ORTHO05D004775 5.3e-56 221.5 155 73.5
Sp6g26140 Schrenkiella parvula HOM05D004151 ORTHO05D004775 2.0e-55 219.5 164 77.4
BcaNung05745 Brassica carinata HOM05D004151 ORTHO05D004775 3.4e-55 218.8 162 73.5
BraA01t04550Z Brassica rapa HOM05D004151 ORTHO05D004775 3.4e-55 218.8 167 70.7
BcaC03g13582 Brassica carinata HOM05D004151 ORTHO05D004775 5.0e-54 214.9 162 74.1
BolC2t06882H Brassica oleracea HOM05D004151 ORTHO05D004775 5.0e-54 214.9 162 74.1
CARHR194880 Cardamine hirsuta HOM05D004151 ORTHO05D004775 8.5e-54 214.2 166 75.9
C02p09730 Brassica napus HOM05D004151 ORTHO05D004775 1.4e-53 213.4 162 74.1
Sp3g02890 Schrenkiella parvula HOM05D004151 ORTHO05D004775 1.9e-53 213.0 163 74.2
BcaNung05743 Brassica carinata HOM05D004151 ORTHO05D004775 2.5e-53 212.6 168 69.0
GSVIVG01033401001 Vitis vinifera HOM05D004151 ORTHO05D004775 2.5e-53 212.6 167 71.9
A03p08690 Brassica napus HOM05D004151 ORTHO05D004775 4.2e-53 211.8 171 71.3
Thhalv10021561m.g Eutrema salsugineum HOM05D004151 ORTHO05D004775 7.2e-53 211.1 158 73.4
A02p04770 Brassica napus HOM05D004151 ORTHO05D004775 1.2e-52 210.3 165 73.3
BolC3t13499H Brassica oleracea HOM05D004151 ORTHO05D004775 1.6e-52 209.9 168 72.6
SGA_v2.0_scaffold274G46513 Striga asiatica HOM05D004151 ORTHO05D004775 4.7e-52 208.4 161 74.5
AL6G29380 Arabidopsis lyrata HOM05D004151 ORTHO05D004775 6.1e-52 208.0 142 82.4
Ah.06g191800 Amaranthus hybridus HOM05D004151 ORTHO05D004775 7.9e-52 207.6 179 67.0
AT5G18180 Arabidopsis thaliana HOM05D004151 ORTHO05D004775 7.9e-52 207.6 144 81.2
Sed0025621 Sechium edule HOM05D004151 ORTHO05D004775 7.9e-52 207.6 166 72.3
FvH4_1g30320 Fragaria vesca HOM05D004151 ORTHO05D004775 1.0e-51 207.2 154 76.0
BcaB01g05179 Brassica carinata HOM05D004151 ORTHO05D004775 1.4e-51 206.8 168 72.0
C03p10140 Brassica napus HOM05D004151 ORTHO05D004775 1.4e-51 206.8 168 72.0
BraA03t10192Z Brassica rapa HOM05D004151 ORTHO05D004775 1.4e-51 206.8 168 72.0
CANSAT78G0749 Cannabis sativa HOM05D004151 ORTHO05D004775 1.8e-51 206.5 182 65.4
Carub.0006s1646 Capsella rubella HOM05D004151 ORTHO05D004775 1.8e-51 206.5 147 77.6
CsaV3_4G013280 Cucumis sativus L. HOM05D004151 ORTHO05D004775 1.8e-51 206.5 157 74.5
THA.LOC104827273 Tarenaya hassleriana HOM05D004151 ORTHO05D004775 2.3e-51 206.1 149 77.2
BraA02t05436Z Brassica rapa HOM05D004151 ORTHO05D004775 3.0e-51 205.7 165 72.1
FAN28G2413 Fragaria x ananassa HOM05D004151 ORTHO05D004775 3.0e-51 205.7 137 80.3
TAR369G0512 Trochodendron aralioides HOM05D004151 ORTHO05D004775 3.9e-51 205.3 182 64.3
Manes.08G144000 Manihot esculenta HOM05D004151 ORTHO05D004775 6.7e-51 204.5 172 68.6
TWI32G1207 Tripterygium wilfordii HOM05D004151 ORTHO05D004775 6.7e-51 204.5 179 66.5
Peaxi162Scf00003g04832 Petunia axillaris HOM05D004151 ORTHO05D004775 8.8e-51 204.1 158 71.5
Sed0023399 Sechium edule HOM05D004151 ORTHO05D004775 8.8e-51 204.1 151 75.5
Cc06_g22960 Coffea canephora HOM05D004151 ORTHO05D004775 1.1e-50 203.8 180 63.3
Aa31LG5G14500 Aethionema arabicum HOM05D004151 ORTHO05D004775 1.5e-50 203.4 179 68.2
Duzib106G1401 Durio zibethinus HOM05D004151 ORTHO05D004775 2.0e-50 203.0 174 67.2
PGSC0003DMG400008366 Solanum tuberosum HOM05D004151 ORTHO05D004775 2.0e-50 203.0 147 78.2
Aa31LG11G11430 Aethionema arabicum HOM05D004151 ORTHO05D004775 2.6e-50 202.6 150 75.3
Cfa016441 Carpinus fangiana HOM05D004151 ORTHO05D004775 3.3e-50 202.2 178 65.2
Nn7g35851 Nelumbo nucifera HOM05D004151 ORTHO05D004775 3.3e-50 202.2 144 75.0
Solyc10g078540.3 Solanum lycopersicum HOM05D004151 ORTHO05D004775 3.3e-50 202.2 147 77.6
Sopen10g029190 Solanum pennellii HOM05D004151 ORTHO05D004775 3.3e-50 202.2 147 77.6
Manes.09G141400 Manihot esculenta HOM05D004151 ORTHO05D004775 4.4e-50 201.8 170 69.4
Os11g0579800 Oryza sativa ssp. japonica HOM05D004151 ORTHO05D004775 4.4e-50 201.8 151 73.5
MD05G1045500 Malus domestica HOM05D004151 ORTHO05D004775 5.7e-50 201.4 151 73.5
SalBow5G4201 Salvia bowleyana HOM05D004151 ORTHO05D004775 7.4e-50 201.1 141 77.3
FAN19G1796 Fragaria x ananassa HOM05D004151 ORTHO05D004775 9.7e-50 200.7 152 74.3
FAN26G2823 Fragaria x ananassa HOM05D004151 ORTHO05D004775 9.7e-50 200.7 152 74.3
RcHm_v2.0_Chr3g0490211 Rosa chinensis HOM05D004151 ORTHO05D004775 9.7e-50 200.7 160 71.2
Thecc.05G294500 Theobroma cacao HOM05D004151 ORTHO05D004775 9.7e-50 200.7 172 67.4
Sc25g0004980 Simmondsia chinensis HOM05D004151 ORTHO05D004775 1.3e-49 200.3 167 68.9
Haze_19418 Corylus avellana HOM05D004151 ORTHO05D004775 2.2e-49 199.5 153 71.2
Haze_19447 Corylus avellana HOM05D004151 ORTHO05D004775 2.2e-49 199.5 153 71.2
Ah.13g075350 Amaranthus hybridus HOM05D004151 ORTHO05D004775 2.8e-49 199.1 155 72.3
BcaB05g23300 Brassica carinata HOM05D004151 ORTHO05D004775 2.8e-49 199.1 150 75.3
PSO063G0165 Papaver somniferum HOM05D004151 ORTHO05D004775 3.7e-49 198.7 161 71.4
PSO384G0229 Papaver somniferum HOM05D004151 ORTHO05D004775 3.7e-49 198.7 148 74.3
PSO782G4796 Papaver somniferum HOM05D004151 ORTHO05D004775 3.7e-49 198.7 154 74.0
THA.LOC104802867 Tarenaya hassleriana HOM05D004151 ORTHO05D004775 3.7e-49 198.7 145 73.8
Atru.chr5.2062 Acer truncatum HOM05D004151 ORTHO05D004775 4.8e-49 198.4 172 69.8
FAN23G0170 Fragaria x ananassa HOM05D004151 ORTHO05D004775 4.8e-49 198.4 152 73.7
Glyma.16G041400 Glycine max HOM05D004151 ORTHO05D004775 6.3e-49 198.0 162 68.5
Lalb_Chr14g0364491 Lupinus albus HOM05D004151 ORTHO05D004775 6.3e-49 198.0 168 66.7
Potri.013G058400 Populus trichocarpa HOM05D004151 ORTHO05D004775 8.2e-49 197.6 111 83.8
Sabra13G0051900 Salix brachista HOM05D004151 ORTHO05D004775 8.2e-49 197.6 167 68.3
PSO339G5713 Papaver somniferum HOM05D004151 ORTHO05D004775 1.1e-48 197.2 143 74.8
Dinv37014 Davidia involucrata HOM05D004151 ORTHO05D004775 1.4e-48 196.8 181 63.0
unitig_21.g20195 Utricularia gibba HOM05D004151 ORTHO05D004775 1.4e-48 196.8 149 74.5
MD00G1189600 Malus domestica HOM05D004151 ORTHO05D004775 1.8e-48 196.4 153 68.6
HPP92_021240 Vanilla planifolia HOM05D004151 ORTHO05D004775 1.8e-48 196.4 149 71.1
MSTRG.19934 Avicennia marina HOM05D004151 ORTHO05D004775 2.4e-48 196.1 174 69.0
Psat0s1971g0280 Pisum sativum HOM05D004151 ORTHO05D004775 2.4e-48 196.1 109 85.3
SEGI_32651 Sequoiadendron giganteum HOM05D004151 ORTHO05D004775 2.4e-48 196.1 148 71.6
EL10Ac3g06820 Beta vulgaris HOM05D004151 ORTHO05D004775 3.1e-48 195.7 147 70.7
Lalb_Chr22g0359191 Lupinus albus HOM05D004151 ORTHO05D004775 3.1e-48 195.7 176 64.2
Nitab4.5_0007542g0010 Nicotiana tabacum HOM05D004151 ORTHO05D004775 4.1e-48 195.3 142 75.4
PGR142G1491 Punica granatum HOM05D004151 ORTHO05D004775 4.1e-48 195.3 142 76.1
QL07p019530 Quercus lobata HOM05D004151 ORTHO05D004775 4.1e-48 195.3 152 72.4
Hma1.2p1_0134F.1_g061640 Hydrangea macrophylla HOM05D004151 ORTHO05D004775 5.3e-48 194.9 160 70.0
Lj1g0021266 Lotus japonicus HOM05D004151 ORTHO05D004775 5.3e-48 194.9 181 64.6
Oeu059999.1 Olea europaea HOM05D004151 ORTHO05D004775 5.3e-48 194.9 173 64.2
Atru.chr5.2060 Acer truncatum HOM05D004151 ORTHO05D004775 7.0e-48 194.5 172 69.2
Dinv14579 Davidia involucrata HOM05D004151 ORTHO05D004775 7.0e-48 194.5 179 64.8
Gohir.A08G213200 Gossypium hirsutum HOM05D004151 ORTHO05D004775 7.0e-48 194.5 141 74.5
Gorai.004G244500 Gossypium raimondii HOM05D004151 ORTHO05D004775 7.0e-48 194.5 141 74.5
Zm00001eb200450 Zea mays HOM05D004151 ORTHO05D004775 7.0e-48 194.5 103 86.4
Nitab4.5_0009048g0010 Nicotiana tabacum HOM05D004151 ORTHO05D004775 9.1e-48 194.1 168 67.9
MELO3C008801.2 Cucumis melo HOM05D004151 ORTHO05D004775 1.2e-47 193.7 168 67.9
Medtr7g085640 Medicago truncatula HOM05D004151 ORTHO05D004775 1.2e-47 193.7 183 62.3
Oeu049600.1 Olea europaea HOM05D004151 ORTHO05D004775 1.2e-47 193.7 134 73.1
AUR62032690 Chenopodium quinoa HOM05D004151 ORTHO05D004775 1.6e-47 193.4 146 71.2
Potri.019G034900 Populus trichocarpa HOM05D004151 ORTHO05D004775 1.6e-47 193.4 108 83.3
VMungo1383G2477 Vigna mungo HOM05D004151 ORTHO05D004775 1.6e-47 193.4 106 84.9
arahy.Tifrunner.gnm1.ann1.JDMG7B Arachis hypogaea HOM05D004151 ORTHO05D004775 2.0e-47 193.0 108 84.3
arahy.Tifrunner.gnm1.ann1.PLSY77 Arachis hypogaea HOM05D004151 ORTHO05D004775 2.0e-47 193.0 108 84.3
ClCG04G005310 Citrullus lanatus HOM05D004151 ORTHO05D004775 2.6e-47 192.6 175 65.7
COL.COLO4_13597 Corchorus olitorius HOM05D004151 ORTHO05D004775 2.6e-47 192.6 143 74.1
Gohir.D08G230300 Gossypium hirsutum HOM05D004151 ORTHO05D004775 2.6e-47 192.6 141 73.8
TPR.G5895 Trifolium pratense HOM05D004151 ORTHO05D004775 4.5e-47 191.8 182 64.3
Duzib177G0709 Durio zibethinus HOM05D004151 ORTHO05D004775 5.9e-47 191.4 176 64.2
Prupe.8G064800 Prunus persica HOM05D004151 ORTHO05D004775 5.9e-47 191.4 176 66.5
Migut.J01888 Erythranthe guttata HOM05D004151 ORTHO05D004775 1.0e-46 190.7 190 64.2
TWI34G0161 Tripterygium wilfordii HOM05D004151 ORTHO05D004775 1.0e-46 190.7 164 67.1
Gohir.A11G296500 Gossypium hirsutum HOM05D004151 ORTHO05D004775 1.3e-46 190.3 141 73.0
Gohir.D11G310400 Gossypium hirsutum HOM05D004151 ORTHO05D004775 1.3e-46 190.3 172 64.5
Gorai.007G343400 Gossypium raimondii HOM05D004151 ORTHO05D004775 1.3e-46 190.3 172 64.5
Phvul.001G110400 Phaseolus vulgaris HOM05D004151 ORTHO05D004775 2.2e-46 189.5 155 69.0
Aqoxy1G00486 Aquilegia oxysepala HOM05D004151 ORTHO05D004775 2.9e-46 189.1 173 65.3
CDE06G0359 Ceratophyllum demersum HOM05D004151 ORTHO05D004775 3.8e-46 188.7 139 73.4
CiPaw.09G001900 Carya illinoinensis HOM05D004151 ORTHO05D004775 6.5e-46 188.0 176 64.2
Hund24835 Selenicereus undatus HOM05D004151 ORTHO05D004775 6.5e-46 188.0 176 60.8
Pp3c5_28430 Physcomitrium patens HOM05D004151 ORTHO05D004775 8.5e-46 187.6 153 66.0
Pp3c25_15020 Physcomitrium patens HOM05D004151 ORTHO05D004775 1.1e-45 187.2 152 67.8
CSS0045523 Camellia sinensis var. sinensis HOM05D004151 ORTHO05D004775 2.5e-45 186.0 137 69.3
Lsat_1_v5_gn_8_145841 Lactuca sativa HOM05D004151 ORTHO05D004775 4.2e-45 185.3 106 82.1
HanXRQChr08g0216931 Helianthus annuus HOM05D004151 ORTHO05D004775 7.2e-45 184.5 181 62.4
ECA233G5487 Erigeron canadensis HOM05D004151 ORTHO05D004775 2.1e-44 183.0 175 61.7
Glyma.19G110900 Glycine max HOM05D004151 ORTHO05D004775 2.1e-44 183.0 182 62.1
Mapoly0086s0024 Marchantia polymorpha HOM05D004151 ORTHO05D004775 3.6e-44 182.2 150 66.0
ATR0697G007 Amborella trichopoda HOM05D004151 ORTHO05D004775 8.0e-44 181.0 141 70.9
Lsat_1_v5_gn_8_24760 Lactuca sativa HOM05D004151 ORTHO05D004775 1.0e-43 180.6 175 61.7
HanXRQChr07g0204461 Helianthus annuus HOM05D004151 ORTHO05D004775 1.4e-43 180.3 148 66.9
Cre13.g567850 Chlamydomonas reinhardtii HOM05D004151 ORTHO05D004775 1.8e-43 179.9 164 61.6
Sabra19G0044800 Salix brachista HOM05D004151 ORTHO05D004775 2.3e-43 179.5 146 71.2
AagrBONN_evm.TU.Sc2ySwM_362.2901 Anthoceros agrestis HOM05D004151 ORTHO05D004775 3.0e-43 179.1 149 65.8
Sabra19G0042500 Salix brachista HOM05D004151 ORTHO05D004775 4.0e-43 178.7 145 71.7
vmacro09141 Vaccinium macrocarpon HOM05D004151 ORTHO05D004775 5.2e-43 178.3 157 66.9
Actinidia22083 Actinidia chinensis HOM05D004151 ORTHO05D004775 6.7e-43 177.9 140 72.1
Rhsim04G0087500 Rhododendron simsii HOM05D004151 ORTHO05D004775 9.7e-42 174.1 153 62.1
Zm00001eb114360 Zea mays HOM05D004151 ORTHO05D004775 1.3e-41 173.7 207 55.1
Peaxi162Scf00076g01048 Petunia axillaris HOM05D004151 ORTHO05D004775 2.2e-41 172.9 152 66.4
Cpa.g.sc51.114 Carica papaya HOM05D004151 ORTHO05D004775 2.8e-41 172.6 91 86.8
COL.COLO4_13598 Corchorus olitorius HOM05D004151 ORTHO05D004775 2.8e-41 172.6 149 65.1
CBR_g48747 Chara braunii HOM05D004151 ORTHO05D004775 2.4e-40 169.5 157 62.4
CAN.G960.49 Capsicum annuum HOM05D004151 ORTHO05D004775 7.0e-40 167.9 93 84.9
Nitab4.5_0004844g0050 Nicotiana tabacum HOM05D004151 ORTHO05D004775 7.0e-40 167.9 89 86.5
Hund19236 Selenicereus undatus HOM05D004151 ORTHO05D004775 2.0e-39 166.4 112 72.3
Ca_08267_v3 Cicer arietinum L. HOM05D004151 ORTHO05D004775 1.7e-38 163.3 90 83.3
Nitab4.5_0002769g0090 Nicotiana tabacum HOM05D004151 ORTHO05D004775 1.9e-37 159.8 157 63.7
MBI11_g31283_MAGBIO Magnolia biondii HOM05D004151 ORTHO05D004775 4.7e-36 155.2 103 78.6
BolC2t11912H Brassica oleracea HOM05D004151 ORTHO05D004775 2.6e-34 149.4 130 62.3
MCO13G219 Micromonas commoda HOM05D004151 ORTHO05D004775 2.2e-33 146.4 127 63.8
SMO347G0554 Selaginella moellendorffii HOM05D004151 ORTHO05D004775 9.1e-32 141.0 129 57.4
C09p58800 Brassica napus HOM05D004151 ORTHO05D004775 2.7e-31 139.4 77 81.8
BraA10t42874Z Brassica rapa HOM05D004151 ORTHO05D004775 4.2e-29 132.1 103 67.0
C02p58510 Brassica napus HOM05D004151 ORTHO05D004775 1.2e-26 124.0 96 65.6
unitig_744.g24550 Utricularia gibba HOM05D004151 ORTHO05D004775 5.7e-26 121.7 92 73.9
PRCOL_00005119 Prasinoderma coloniale HOM05D005848 ORTHO05D007532 1.7e-25 120.2 76 68.4
Actinidia30553 Actinidia chinensis HOM05D004151 ORTHO05D004775 7.3e-21 104.8 58 84.5
Haze_27090 Corylus avellana HOM05D000590 ORTHO05D004775 7.3e-21 104.8 131 43.5
Oeu035726.1 Olea europaea HOM05D004151 ORTHO05D004775 1.2e-18 97.4 97 60.8
Zm00001eb274230 Zea mays HOM05D004151 ORTHO05D004775 1.2e-18 97.4 50 86.0
Oeu035720.1 Olea europaea HOM05D004151 ORTHO05D004775 1.3e-17 94.0 96 58.3
HanXRQChr05g0143841 Helianthus annuus HOM05D004151 ORTHO05D004775 1.1e-16 90.9 160 43.8
Atru.chr10.1764 Acer truncatum HOM05D004151 ORTHO05D004775 1.5e-13 80.5 63 69.8
Atru.chr5.2304 Acer truncatum HOM05D004151 ORTHO05D004775 1.5e-13 80.5 63 69.8
Atru.chr6.7 Acer truncatum HOM05D004151 ORTHO05D004775 5.6e-13 78.6 63 68.3
Atru.chr13.534 Acer truncatum HOM05D004151 ORTHO05D004775 1.2e-12 77.4 63 68.3
Atru.chr2.3197 Acer truncatum HOM05D004151 ORTHO05D004775 1.2e-12 77.4 63 68.3
Atru.chr4.2011 Acer truncatum HOM05D004151 ORTHO05D004775 1.2e-12 77.4 63 68.3
BcaB08g36698 Brassica carinata HOM05D004151 ORTHO05D004775 2.3e-11 73.2 47 76.6
BolC9t58722H Brassica oleracea HOM05D004151 ORTHO05D004775 3.4e-10 69.3 149 41.6
ECA246G0128 Erigeron canadensis HOM05D001659 ORTHO05D001659 1.7e-06 57.0 38 65.8


User provided reference genes

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