Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR071470 Cardamine hirsuta HOM05D005073 ORTHO05D006166 2.4e-185 652.1 347 100.0
Carub.0002s2490 Capsella rubella HOM05D005073 ORTHO05D006166 1.2e-160 570.1 347 86.2
Thhalv10018349m.g Eutrema salsugineum HOM05D005073 ORTHO05D006166 2.0e-160 569.3 343 86.9
AL2G38280 Arabidopsis lyrata HOM05D005073 ORTHO05D006166 3.8e-159 565.1 344 86.9
AT1G78010 Arabidopsis thaliana HOM05D005073 ORTHO05D006166 9.3e-158 560.5 344 86.0
Sp5g33150 Schrenkiella parvula HOM05D005073 ORTHO05D006166 6.0e-157 557.8 344 84.9
Aa31LG4G8070 Aethionema arabicum HOM05D005073 ORTHO05D006166 3.4e-144 515.4 345 80.0
A07p43250 Brassica napus HOM05D005073 ORTHO05D006166 5.9e-144 514.6 343 79.3
C06p51930 Brassica napus HOM05D005073 ORTHO05D006166 1.7e-143 513.1 343 80.5
THA.LOC104810083 Tarenaya hassleriana HOM05D005073 ORTHO05D006166 1.3e-135 486.9 348 76.1
BolC6t40215H Brassica oleracea HOM05D005073 ORTHO05D006166 1.2e-128 463.8 344 74.7
BraA07t31846Z Brassica rapa HOM05D005073 ORTHO05D006166 2.2e-127 459.5 344 72.7
Atru.chr13.1265 Acer truncatum HOM05D005073 ORTHO05D006166 2.0e-123 446.4 355 68.5
Gohir.A05G229400 Gossypium hirsutum HOM05D005073 ORTHO05D006166 1.8e-116 423.3 348 65.8
Duzib041G0650 Durio zibethinus HOM05D005073 ORTHO05D006166 2.3e-116 422.9 343 67.1
Cpa.g.sc66.92 Carica papaya HOM05D005073 ORTHO05D006166 5.2e-116 421.8 376 63.8
Thecc.08G112000 Theobroma cacao HOM05D005073 ORTHO05D006166 1.2e-115 420.6 345 67.2
Gohir.D05G231700 Gossypium hirsutum HOM05D005073 ORTHO05D006166 2.0e-115 419.9 348 64.9
Gorai.009G239900 Gossypium raimondii HOM05D005073 ORTHO05D006166 9.7e-115 417.5 348 64.7
Sabra02G0073100 Salix brachista HOM05D005073 ORTHO05D006166 1.1e-113 414.1 344 64.5
Ciclev10003846m.g Citrus clementina HOM05D005073 ORTHO05D006166 2.4e-113 412.9 354 65.5
Eucgr.F02969 Eucalyptus grandis HOM05D005073 ORTHO05D006166 2.4e-113 412.9 303 71.6
CiPaw.05G232900 Carya illinoinensis HOM05D005073 ORTHO05D006166 5.3e-113 411.8 352 66.2
TAR381G0980 Trochodendron aralioides HOM05D005073 ORTHO05D006166 1.2e-112 410.6 345 65.5
Dinv44743 Davidia involucrata HOM05D005073 ORTHO05D006166 2.0e-112 409.8 352 65.9
Potri.002G092600 Populus trichocarpa HOM05D005073 ORTHO05D006166 2.0e-112 409.8 344 64.5
Glyma.04G105000 Glycine max HOM05D005073 ORTHO05D006166 2.9e-111 406.0 300 70.7
BcaC08g47633 Brassica carinata HOM05D005073 ORTHO05D006166 6.5e-111 404.8 354 66.7
COL.COLO4_16466 Corchorus olitorius HOM05D005073 ORTHO05D006166 2.5e-110 402.9 346 64.5
CsaV3_5G023620 Cucumis sativus L. HOM05D005073 ORTHO05D006166 2.5e-110 402.9 349 63.3
Nn1g05274 Nelumbo nucifera HOM05D005073 ORTHO05D006166 4.2e-110 402.1 365 63.8
MELO3C022795.2 Cucumis melo HOM05D005073 ORTHO05D006166 5.5e-110 401.7 349 62.5
Phvul.009G028601 Phaseolus vulgaris HOM05D005073 ORTHO05D006166 1.2e-109 400.6 293 72.4
PGSC0003DMG400009470 Solanum tuberosum HOM05D005073 ORTHO05D006166 1.2e-109 400.6 349 63.9
MD08G1177300 Malus domestica HOM05D005073 ORTHO05D006166 2.7e-109 399.4 345 64.3
CSS0031049 Camellia sinensis var. sinensis HOM05D005073 ORTHO05D006166 3.6e-109 399.1 331 67.7
SalBow7G0210 Salvia bowleyana HOM05D005073 ORTHO05D006166 4.7e-109 398.7 343 64.1
Sopen04g028940 Solanum pennellii HOM05D005073 ORTHO05D006166 6.1e-109 398.3 346 63.9
CSS0000538 Camellia sinensis var. sinensis HOM05D005073 ORTHO05D006166 8.0e-109 397.9 328 68.0
Glyma.06G106000 Glycine max HOM05D005073 ORTHO05D006166 1.4e-108 397.1 313 67.7
Prupe.1G511900 Prunus persica HOM05D005073 ORTHO05D006166 1.8e-108 396.7 299 68.9
Sed0012840 Sechium edule HOM05D005073 ORTHO05D006166 1.8e-108 396.7 348 63.5
SGA_v2.0_scaffold24G10294 Striga asiatica HOM05D005073 ORTHO05D006166 1.8e-108 396.7 350 62.0
Nitab4.5_0000469g0190 Nicotiana tabacum HOM05D005073 ORTHO05D006166 3.0e-108 396.0 347 63.1
SGA_v2.0_scaffold48G18021 Striga asiatica HOM05D005073 ORTHO05D006166 4.0e-108 395.6 361 61.8
arahy.Tifrunner.gnm1.ann1.T10PLA Arachis hypogaea HOM05D005073 ORTHO05D006166 6.8e-108 394.8 321 65.7
ECA246G0226 Erigeron canadensis HOM05D005073 ORTHO05D006166 6.8e-108 394.8 354 63.6
CANSAT54G2794 Cannabis sativa HOM05D005073 ORTHO05D006166 8.8e-108 394.4 350 64.3
Actinidia30750 Actinidia chinensis HOM05D005073 ORTHO05D006166 1.5e-107 393.7 288 73.6
HanXRQChr10g0278501 Helianthus annuus HOM05D005073 ORTHO05D006166 1.5e-107 393.7 350 62.3
Atru.BG.242.p Acer truncatum HOM05D005073 ORTHO05D006166 4.4e-107 392.1 252 79.8
Haze_00571 Corylus avellana HOM05D005073 ORTHO05D006166 5.7e-107 391.7 316 67.4
RcHm_v2.0_Chr7g0239951 Rosa chinensis HOM05D005073 ORTHO05D006166 5.7e-107 391.7 256 78.1
VMungo1309G2662 Vigna mungo HOM05D005073 ORTHO05D006166 5.7e-107 391.7 289 71.6
ClCG03G008990 Citrullus lanatus HOM05D005073 ORTHO05D006166 7.5e-107 391.3 350 61.7
TPR.G34614 Trifolium pratense HOM05D005073 ORTHO05D006166 7.5e-107 391.3 296 71.6
Cc10_g05860 Coffea canephora HOM05D005073 ORTHO05D006166 1.3e-106 390.6 317 66.2
Nitab4.5_0009824g0010 Nicotiana tabacum HOM05D005073 ORTHO05D006166 1.7e-106 390.2 346 61.8
Hma1.2p1_0120F.1_g057030 Hydrangea macrophylla HOM05D005073 ORTHO05D006166 2.8e-106 389.4 260 78.1
PSO210G7769 Papaver somniferum HOM05D005073 ORTHO05D006166 6.3e-106 388.3 314 66.9
PSO447G0212 Papaver somniferum HOM05D005073 ORTHO05D006166 8.3e-106 387.9 314 66.9
GSVIVG01008990001 Vitis vinifera HOM05D005073 ORTHO05D006166 8.3e-106 387.9 283 71.7
FvH4_5g38010 Fragaria vesca HOM05D005073 ORTHO05D006166 1.4e-105 387.1 256 77.0
Lj1g0017290 Lotus japonicus HOM05D005073 ORTHO05D006166 1.4e-105 387.1 297 69.4
FAN13G1954 Fragaria x ananassa HOM05D005073 ORTHO05D006166 1.8e-105 386.7 256 77.0
Ca_15226_v3 Cicer arietinum L. HOM05D005073 ORTHO05D006166 2.4e-105 386.3 340 63.2
Peaxi162Scf00310g00019 Petunia axillaris HOM05D005073 ORTHO05D006166 3.1e-105 386.0 284 71.5
Psat5g137200 Pisum sativum HOM05D005073 ORTHO05D006166 3.1e-105 386.0 296 69.3
Manes.18G070400 Manihot esculenta HOM05D005073 ORTHO05D006166 4.1e-105 385.6 349 58.7
Medtr3g073790 Medicago truncatula HOM05D005073 ORTHO05D006166 4.1e-105 385.6 310 67.1
Lalb_Chr23g0270691 Lupinus albus HOM05D005073 ORTHO05D006166 7.0e-105 384.8 261 74.3
CAN.G517.17 Capsicum annuum HOM05D005073 ORTHO05D006166 2.0e-104 383.3 288 69.8
Aqoxy1G01853 Aquilegia oxysepala HOM05D005073 ORTHO05D006166 3.5e-104 382.5 314 65.6
PGR044G0799 Punica granatum HOM05D005073 ORTHO05D006166 4.5e-104 382.1 356 62.4
Migut.C00179 Erythranthe guttata HOM05D005073 ORTHO05D006166 1.7e-103 380.2 319 63.9
FAN04G2698 Fragaria x ananassa HOM05D005073 ORTHO05D006166 2.9e-103 379.4 256 75.4
FAN08G1532 Fragaria x ananassa HOM05D005073 ORTHO05D006166 5.0e-103 378.6 302 67.2
Oeu024557.1 Olea europaea HOM05D005073 ORTHO05D006166 1.5e-102 377.1 355 60.3
CDE03G0055 Ceratophyllum demersum HOM05D005073 ORTHO05D006166 1.9e-102 376.7 321 65.1
FAN18G0258 Fragaria x ananassa HOM05D005073 ORTHO05D006166 3.3e-102 375.9 280 70.7
Os08g0407000 Oryza sativa ssp. japonica HOM05D005073 ORTHO05D006166 4.7e-101 372.1 252 73.8
arahy.Tifrunner.gnm1.ann1.K8DV01 Arachis hypogaea HOM05D005073 ORTHO05D006166 8.0e-101 371.3 330 62.1
HPP92_016476 Vanilla planifolia HOM05D005073 ORTHO05D006166 4.0e-100 369.0 311 63.0
HPP92_016434 Vanilla planifolia HOM05D005073 ORTHO05D006166 5.2e-100 368.6 319 61.8
unitig_0.g2069 Utricularia gibba HOM05D005073 ORTHO05D006166 2.6e-99 366.3 255 73.7
Lj4C715T1 Lonicera japonica HOM05D005073 ORTHO05D006166 7.5e-99 364.8 348 60.3
Lsat_1_v5_gn_6_102120 Lactuca sativa HOM05D005073 ORTHO05D006166 1.3e-98 364.0 350 60.3
AUR62034358 Chenopodium quinoa HOM05D005073 ORTHO05D006166 4.1e-97 359.0 302 65.2
AUR62022347 Chenopodium quinoa HOM05D005073 ORTHO05D006166 1.6e-96 357.1 302 64.6
Zm00001eb178820 Zea mays HOM05D005073 ORTHO05D006166 1.6e-96 357.1 240 75.0
DCAR_008707 Daucus carota HOM05D005073 ORTHO05D006166 3.9e-95 352.4 280 67.1
Hund26651 Selenicereus undatus HOM05D005073 ORTHO05D006166 3.9e-95 352.4 361 55.4
ATR0564G350 Amborella trichopoda HOM05D005073 ORTHO05D006166 6.6e-95 351.7 256 70.3
SEGI_22824 Sequoiadendron giganteum HOM05D005073 ORTHO05D006166 3.3e-94 349.4 256 69.1
EL10Ac1g01681 Beta vulgaris HOM05D005073 ORTHO05D006166 2.1e-93 346.7 291 64.9
Ah.16g109530 Amaranthus hybridus HOM05D005073 ORTHO05D006166 7.5e-91 338.2 343 57.1
Sc12g0004230 Simmondsia chinensis HOM05D005073 ORTHO05D006166 1.4e-89 334.0 239 71.5
Pp3c13_12510 Physcomitrium patens HOM05D005073 ORTHO05D006166 8.0e-85 318.2 254 63.0
Pp3c13_12516 Physcomitrium patens HOM05D005073 ORTHO05D006166 8.0e-85 318.2 254 63.0
Mapoly0034s0014 Marchantia polymorpha HOM05D005073 ORTHO05D006166 5.2e-84 315.5 252 63.9
CBR_g9146 Chara braunii HOM05D005073 ORTHO05D006166 9.8e-83 311.2 254 60.6
AagrBONN_evm.TU.Sc2ySwM_228.2622 Anthoceros agrestis HOM05D005073 ORTHO05D006166 2.9e-82 309.7 244 63.9
SMO137G0212 Selaginella moellendorffii HOM05D005073 ORTHO05D006166 5.1e-79 298.9 260 57.7
Cre16.g681238 Chlamydomonas reinhardtii HOM05D005073 ORTHO05D006166 4.9e-66 255.8 255 52.2
MBI02_g30882_MAGBIO Magnolia biondii HOM05D005073 ORTHO05D006166 1.3e-63 247.7 344 48.8
PRCOL_00000127 Prasinoderma coloniale HOM05D005073 ORTHO05D006166 2.5e-62 243.4 257 49.8
MCO14G420 Micromonas commoda HOM05D005073 ORTHO05D006166 5.6e-62 242.3 286 47.9
QL12p035942 Quercus lobata HOM05D005073 ORTHO05D006166 1.5e-54 217.6 129 85.3
QL12p035939 Quercus lobata HOM05D005073 ORTHO05D006166 2.0e-43 180.6 219 49.8
vmacro21228 Vaccinium macrocarpon HOM05D005073 ORTHO05D006166 1.9e-38 164.1 170 55.3
Rhsim06G0085400 Rhododendron simsii HOM05D005073 ORTHO05D006166 1.6e-37 161.0 170 52.9
C09p47800 Brassica napus HOM05D005073 ORTHO05D006166 9.3e-33 145.2 171 53.8
A03p65370 Brassica napus HOM05D005073 ORTHO05D006166 3.0e-31 140.2 171 53.8
BraA03t15591Z Brassica rapa HOM05D005073 ORTHO05D006166 3.0e-31 140.2 171 53.8
C08p22880 Brassica napus HOM05D005073 ORTHO05D006166 1.9e-30 137.5 178 51.1
BolC8t49924H Brassica oleracea HOM05D005073 ORTHO05D006166 1.9e-30 137.5 178 51.1
Hma1.2p1_0120F.1_g057040 Hydrangea macrophylla HOM05D005073 ORTHO05D006166 1.9e-30 137.5 80 83.8
C05p36400 Brassica napus HOM05D005073 ORTHO05D006166 3.3e-30 136.7 174 51.7
BcaC05g27652 Brassica carinata HOM05D005073 ORTHO05D006166 6.3e-29 132.5 176 50.0
MD15G1355000 Malus domestica HOM05D005073 ORTHO05D006166 6.3e-29 132.5 79 81.0
Actinidia10299 Actinidia chinensis HOM05D005073 ORTHO05D006166 2.4e-28 130.6 129 56.6
A09p41080 Brassica napus HOM05D005073 ORTHO05D006166 2.4e-28 130.6 142 55.6
BcaC07g39279 Brassica carinata HOM05D005073 ORTHO05D006166 5.3e-28 129.4 156 52.6
BcaC06g36777 Brassica carinata HOM05D005073 ORTHO05D006166 3.4e-27 126.7 175 48.6
BolC7t40457H Brassica oleracea HOM05D005073 ORTHO05D006166 3.4e-27 126.7 175 49.1
BolC7t40456H Brassica oleracea HOM05D005073 ORTHO05D006166 4.2e-25 119.8 173 48.6
Duzib093G1393 Durio zibethinus HOM05D005073 ORTHO05D006166 7.2e-25 119.0 167 46.1
Cfa027202 Carpinus fangiana HOM05D005073 ORTHO05D006166 1.1e-22 111.7 264 33.3
BraA09t39601Z Brassica rapa HOM05D005073 ORTHO05D006166 1.6e-16 91.3 112 51.8
A04p08580 Brassica napus HOM05D005073 ORTHO05D006166 3.9e-15 86.7 112 50.0
BraA04t16552Z Brassica rapa HOM05D005073 ORTHO05D006166 3.9e-15 86.7 112 50.0
C07p00040 Brassica napus HOM05D005073 ORTHO05D006166 8.8e-07 58.9 43 62.8
C07p00050 Brassica napus HOM05D005073 ORTHO05D006166 8.8e-07 58.9 43 62.8
MBI18_g42472_MAGBIO Magnolia biondii HOM05D005073 ORTHO05D006166 8.8e-07 58.9 41 78.0


User provided reference genes

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