Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR040530 Cardamine hirsuta HOM05D003391 ORTHO05D005563 0.0e+00 1395.2 729 100.0
Sp1g37350 Schrenkiella parvula HOM05D003391 ORTHO05D005563 0.0e+00 1225.3 689 93.0
AL1G58160 Arabidopsis lyrata HOM05D003391 ORTHO05D005563 0.0e+00 1222.6 693 92.9
AT1G50500 Arabidopsis thaliana HOM05D003391 ORTHO05D005563 0.0e+00 1219.5 693 92.4
A05p20100 Brassica napus HOM05D003391 ORTHO05D005563 0.0e+00 1209.9 689 92.3
C05p33590 Brassica napus HOM05D003391 ORTHO05D005563 0.0e+00 1209.9 689 92.3
BcaB02g11154 Brassica carinata HOM05D003391 ORTHO05D005563 0.0e+00 1206.8 689 92.0
Carub.0001s3957 Capsella rubella HOM05D003391 ORTHO05D005563 0.0e+00 1206.4 689 92.6
BcaC05g27411 Brassica carinata HOM05D003391 ORTHO05D005563 0.0e+00 1203.0 689 91.9
Thhalv10011301m.g Eutrema salsugineum HOM05D003391 ORTHO05D005563 0.0e+00 1189.1 671 93.0
Aa31LG10G3790 Aethionema arabicum HOM05D003391 ORTHO05D005563 0.0e+00 1181.8 689 90.1
THA.LOC104809239 Tarenaya hassleriana HOM05D003391 ORTHO05D005563 0.0e+00 1163.7 689 88.0
BcaC01g01234 Brassica carinata HOM05D003391 ORTHO05D005563 0.0e+00 1161.0 697 88.1
Cpa.g.sc122.39 Carica papaya HOM05D003391 ORTHO05D005563 0.0e+00 1089.3 690 83.5
Atru.chr13.1465 Acer truncatum HOM05D003391 ORTHO05D005563 0.0e+00 1087.4 689 82.3
CANSAT64G0651 Cannabis sativa HOM05D003391 ORTHO05D005563 0.0e+00 1084.7 689 82.6
Prupe.3G191700 Prunus persica HOM05D003391 ORTHO05D005563 0.0e+00 1082.8 689 82.6
QL04p065456 Quercus lobata HOM05D003391 ORTHO05D005563 0.0e+00 1080.5 689 82.1
Cfa018226 Carpinus fangiana HOM05D003391 ORTHO05D005563 0.0e+00 1080.1 689 82.0
CsaV3_4G032190 Cucumis sativus L. HOM05D003391 ORTHO05D005563 0.0e+00 1077.4 689 82.1
Eucgr.G02677 Eucalyptus grandis HOM05D003391 ORTHO05D005563 0.0e+00 1075.5 710 80.1
Gohir.D08G181000 Gossypium hirsutum HOM05D003391 ORTHO05D005563 0.0e+00 1075.1 689 82.0
Gorai.004G190000 Gossypium raimondii HOM05D003391 ORTHO05D005563 0.0e+00 1075.1 689 82.0
MD09G1135000 Malus domestica HOM05D003391 ORTHO05D005563 5.0e-312 1074.7 689 82.0
MELO3C026391.2 Cucumis melo HOM05D003391 ORTHO05D005563 5.0e-312 1073.9 689 81.9
Thecc.03G235800 Theobroma cacao HOM05D003391 ORTHO05D005563 5.0e-312 1073.9 689 82.0
Gohir.A08G160766 Gossypium hirsutum HOM05D003391 ORTHO05D005563 1.5e-311 1072.4 689 82.0
RcHm_v2.0_Chr2g0154761 Rosa chinensis HOM05D003391 ORTHO05D005563 3.5e-311 1071.2 689 81.4
MD17G1124000 Malus domestica HOM05D003391 ORTHO05D005563 7.5e-311 1070.1 689 81.7
GSVIVG01016094001 Vitis vinifera HOM05D003391 ORTHO05D005563 7.5e-311 1070.1 689 81.6
arahy.Tifrunner.gnm1.ann1.635YAA Arachis hypogaea HOM05D003391 ORTHO05D005563 1.7e-310 1068.9 689 81.1
Duzib084G0647 Durio zibethinus HOM05D003391 ORTHO05D005563 4.9e-310 1067.4 689 81.9
Glyma.09G018300 Glycine max HOM05D003391 ORTHO05D005563 2.4e-309 1065.1 689 80.8
CiPaw.10G102000 Carya illinoinensis HOM05D003391 ORTHO05D005563 3.2e-309 1064.7 689 81.4
VMungo0540G0836 Vigna mungo HOM05D003391 ORTHO05D005563 3.2e-309 1064.7 689 81.0
Medtr2g028270 Medicago truncatula HOM05D003391 ORTHO05D005563 4.2e-309 1064.3 689 80.8
PGR042G2316 Punica granatum HOM05D003391 ORTHO05D005563 1.2e-308 1062.8 689 80.3
TPR.G10474 Trifolium pratense HOM05D003391 ORTHO05D005563 1.6e-308 1062.4 689 81.0
TWI74G0249 Tripterygium wilfordii HOM05D003391 ORTHO05D005563 2.1e-308 1062.0 689 80.3
Phvul.006G134000 Phaseolus vulgaris HOM05D003391 ORTHO05D005563 7.9e-308 1060.1 689 80.7
FAN02G4219 Fragaria x ananassa HOM05D003391 ORTHO05D005563 2.3e-307 1058.5 689 81.0
Glyma.15G124200 Glycine max HOM05D003391 ORTHO05D005563 2.3e-307 1058.5 689 80.1
Manes.01G037700 Manihot esculenta HOM05D003391 ORTHO05D005563 2.3e-307 1058.5 689 80.1
FvH4_6g40130 Fragaria vesca HOM05D003391 ORTHO05D005563 8.7e-307 1056.6 689 81.3
Sed0012933 Sechium edule HOM05D003391 ORTHO05D005563 8.7e-307 1056.6 689 80.8
Lj6g0008612 Lotus japonicus HOM05D003391 ORTHO05D005563 2.5e-306 1055.0 689 80.6
Lalb_Chr18g0057621 Lupinus albus HOM05D003391 ORTHO05D005563 4.3e-306 1054.3 689 79.8
FAN05G0705 Fragaria x ananassa HOM05D003391 ORTHO05D005563 7.4e-306 1053.5 690 81.2
FAN09G1714 Fragaria x ananassa HOM05D003391 ORTHO05D005563 1.3e-305 1052.7 690 80.9
AUR62023891 Chenopodium quinoa HOM05D003391 ORTHO05D005563 1.6e-305 1052.4 689 80.0
Dinv10208 Davidia involucrata HOM05D003391 ORTHO05D005563 8.1e-305 1050.0 689 80.3
TWI77G0821 Tripterygium wilfordii HOM05D003391 ORTHO05D005563 1.2e-303 1046.2 689 79.2
EL10Ac9g21140 Beta vulgaris HOM05D003391 ORTHO05D005563 2.6e-303 1045.0 689 79.1
Hma1.2p1_0583F.1_g183000 Hydrangea macrophylla HOM05D003391 ORTHO05D005563 3.4e-303 1044.6 653 83.0
C03p89680 Brassica napus HOM05D003391 ORTHO05D005563 1.3e-302 1042.7 715 79.4
TAR626G0891 Trochodendron aralioides HOM05D003391 ORTHO05D005563 4.2e-301 1037.7 689 79.2
Potri.016G023000 Populus trichocarpa HOM05D003391 ORTHO05D005563 5.5e-301 1037.3 689 79.5
vmacro13793 Vaccinium macrocarpon HOM05D003391 ORTHO05D005563 4.6e-300 1034.2 689 79.0
Solyc04g049490.3 Solanum lycopersicum HOM05D003391 ORTHO05D005563 1.5e-298 1029.2 688 78.1
Sopen04g019460 Solanum pennellii HOM05D003391 ORTHO05D005563 1.5e-298 1029.2 688 78.1
MSTRG.9187 Avicennia marina HOM05D003391 ORTHO05D005563 5.6e-298 1027.3 692 78.6
Cc06_g14340 Coffea canephora HOM05D003391 ORTHO05D005563 1.6e-297 1025.8 689 78.2
PSO675G3205 Papaver somniferum HOM05D003391 ORTHO05D005563 2.1e-297 1025.4 688 77.8
SalBow4G0334 Salvia bowleyana HOM05D003391 ORTHO05D005563 2.1e-297 1025.4 665 80.5
CAN.G466.12 Capsicum annuum HOM05D003391 ORTHO05D005563 6.2e-297 1023.8 689 77.9
FAN14G1902 Fragaria x ananassa HOM05D003391 ORTHO05D005563 1.4e-296 1022.7 740 75.5
PSO541G1880 Papaver somniferum HOM05D003391 ORTHO05D005563 1.4e-296 1022.7 701 76.3
Nn7g37683 Nelumbo nucifera HOM05D003391 ORTHO05D005563 2.4e-296 1021.9 690 77.2
Migut.F02007 Erythranthe guttata HOM05D003391 ORTHO05D005563 9.0e-296 1020.0 691 77.1
CSS0020230 Camellia sinensis var. sinensis HOM05D003391 ORTHO05D005563 4.5e-295 1017.7 697 76.9
Peaxi162Scf00072g00087 Petunia axillaris HOM05D003391 ORTHO05D005563 4.5e-295 1017.7 671 79.6
MSTRG.27454 Avicennia marina HOM05D003391 ORTHO05D005563 1.3e-294 1016.1 689 77.5
CAN.G998.14 Capsicum annuum HOM05D003391 ORTHO05D005563 2.9e-294 1015.0 689 76.9
Aqoxy3G00251 Aquilegia oxysepala HOM05D003391 ORTHO05D005563 3.8e-294 1014.6 701 75.7
Duzib068G0467 Durio zibethinus HOM05D003391 ORTHO05D005563 1.4e-293 1012.7 689 78.4
Sc24g0003350 Simmondsia chinensis HOM05D003391 ORTHO05D005563 1.4e-293 1012.7 689 76.6
Ca_11369_v3 Cicer arietinum L. HOM05D003391 ORTHO05D005563 1.6e-292 1009.2 689 77.8
Ca_30786_v3 Cicer arietinum L. HOM05D003391 ORTHO05D005563 1.6e-292 1009.2 689 77.8
COL.COLO4_06714 Corchorus olitorius HOM05D003391 ORTHO05D005563 2.7e-292 1008.4 672 80.1
CSS0023421 Camellia sinensis var. sinensis HOM05D003391 ORTHO05D005563 2.3e-291 1005.4 700 75.7
HanXRQChr04g0122221 Helianthus annuus HOM05D003391 ORTHO05D005563 2.3e-291 1005.4 684 76.8
CDE02G0628 Ceratophyllum demersum HOM05D003391 ORTHO05D005563 3.0e-291 1005.0 693 75.5
arahy.Tifrunner.gnm1.ann1.QTWQ8J Arachis hypogaea HOM05D003391 ORTHO05D005563 1.9e-290 1002.3 621 83.3
AUR62022296 Chenopodium quinoa HOM05D003391 ORTHO05D005563 5.7e-290 1000.7 689 76.8
BolC5t32086H Brassica oleracea HOM05D003391 ORTHO05D005563 7.4e-290 1000.3 693 80.2
Migut.F01784 Erythranthe guttata HOM05D003391 ORTHO05D005563 1.3e-289 999.6 687 76.0
BraA05t20918Z Brassica rapa HOM05D003391 ORTHO05D005563 1.1e-288 996.5 692 80.2
ECA236G2623 Erigeron canadensis HOM05D003391 ORTHO05D005563 1.8e-288 995.7 689 75.0
SGA_v2.0_scaffold62G21434 Striga asiatica HOM05D003391 ORTHO05D005563 8.5e-286 986.9 773 69.3
Sabra16G0023000 Salix brachista HOM05D003391 ORTHO05D005563 5.5e-285 984.2 689 76.3
Sabra16G0029200 Salix brachista HOM05D003391 ORTHO05D005563 5.5e-285 984.2 689 76.3
Zm00001eb144220 Zea mays HOM05D003391 ORTHO05D005563 7.2e-285 983.8 690 75.2
MBI18_g28220_MAGBIO Magnolia biondii HOM05D003391 ORTHO05D005563 7.9e-284 980.3 647 78.7
ATR1098G037 Amborella trichopoda HOM05D003391 ORTHO05D005563 1.4e-283 979.5 694 74.4
ECA240G2134 Erigeron canadensis HOM05D003391 ORTHO05D005563 2.2e-281 972.2 689 72.1
DCAR_003077 Daucus carota HOM05D003391 ORTHO05D005563 4.1e-280 968.0 655 78.2
Eucgr.L01917 Eucalyptus grandis HOM05D003391 ORTHO05D005563 2.3e-275 952.2 586 83.6
Nitab4.5_0007706g0020 Nicotiana tabacum HOM05D003391 ORTHO05D005563 3.3e-274 948.3 653 77.2
ClCG11G016680 Citrullus lanatus HOM05D003391 ORTHO05D005563 4.8e-273 944.5 658 77.1
Lsat_1_v5_gn_7_7561 Lactuca sativa HOM05D003391 ORTHO05D005563 4.5e-271 937.9 702 71.2
CDE05G3605 Ceratophyllum demersum HOM05D003391 ORTHO05D005563 2.9e-270 935.3 683 72.0
Hund02122 Selenicereus undatus HOM05D003391 ORTHO05D005563 5.2e-267 924.5 617 78.1
Haze_17876 Corylus avellana HOM05D003391 ORTHO05D005563 1.7e-265 919.5 715 70.3
HanXRQChr03g0093781 Helianthus annuus HOM05D003391 ORTHO05D005563 2.9e-262 908.7 673 70.9
Oeu033843.4 Olea europaea HOM05D003391 ORTHO05D005563 1.9e-261 906.0 693 70.4
Atru.chr13.1440 Acer truncatum HOM05D003391 ORTHO05D005563 7.7e-255 884.0 689 71.0
unitig_899.g14436 Utricularia gibba HOM05D003391 ORTHO05D005563 9.4e-253 877.1 675 69.8
Lalb_Chr15g0088521 Lupinus albus HOM05D003391 ORTHO05D005563 3.6e-252 875.2 554 80.1
AL1G58810 Arabidopsis lyrata HOM05D003391 ORTHO05D005563 1.9e-245 852.8 700 68.7
BcaB04g17246 Brassica carinata HOM05D003391 ORTHO05D005563 2.3e-243 845.9 657 72.6
Mapoly0030s0152 Marchantia polymorpha HOM05D003391 ORTHO05D005563 2.3e-243 845.9 691 64.0
SMO196G0220 Selaginella moellendorffii HOM05D003391 ORTHO05D005563 1.4e-240 836.6 700 63.0
Nitab4.5_0000575g0140 Nicotiana tabacum HOM05D003391 ORTHO05D005563 1.9e-237 826.2 643 70.1
Rhsim05G0168000 Rhododendron simsii HOM05D003391 ORTHO05D005563 9.5e-237 823.9 715 65.7
Ah.01g004390 Amaranthus hybridus HOM05D003391 ORTHO05D005563 5.2e-235 818.1 689 66.2
Pp3c8_8190 Physcomitrium patens HOM05D003391 ORTHO05D005563 3.4e-234 815.5 688 61.2
Pp3c24_4920 Physcomitrium patens HOM05D003391 ORTHO05D005563 7.0e-232 807.7 687 60.7
Lj7A654G26 Lonicera japonica HOM05D003391 ORTHO05D005563 9.2e-232 807.4 552 76.4
AL1G58840 Arabidopsis lyrata HOM05D003391 ORTHO05D005563 2.3e-222 776.2 701 64.9
Actinidia37789 Actinidia chinensis HOM05D003391 ORTHO05D005563 5.1e-222 775.0 540 76.9
Psat1g171000 Pisum sativum HOM05D003391 ORTHO05D005563 1.9e-216 756.5 489 78.7
CBR_g35042 Chara braunii HOM05D003391 ORTHO05D005563 1.6e-215 753.4 771 53.7
Oeu030440.3 Olea europaea HOM05D003391 ORTHO05D005563 4.3e-213 745.3 558 69.9
arahy.Tifrunner.gnm1.ann1.MM6MID Arachis hypogaea HOM05D003391 ORTHO05D005563 9.6e-213 744.2 711 61.0
BolC3t21285H Brassica oleracea HOM05D003391 ORTHO05D005563 3.1e-211 739.2 465 84.9
AagrBONN_evm.TU.Sc2ySwM_228.283 Anthoceros agrestis HOM05D003391 ORTHO05D005563 3.2e-200 702.6 597 61.8
HPP92_006006 Vanilla planifolia HOM05D003391 ORTHO05D005563 1.3e-185 654.1 560 66.2
Rhsim11G0087500 Rhododendron simsii HOM05D003391 ORTHO05D005563 8.4e-185 651.4 499 71.5
Ciclev10029974m.g Citrus clementina HOM05D003391 ORTHO05D005563 1.2e-183 647.5 474 74.9
Lsat_1_v5_gn_3_133361 Lactuca sativa HOM05D003391 ORTHO05D005563 5.1e-182 642.1 686 55.5
SHI21342 Sapria himalayana HOM05D003391 ORTHO05D005563 4.7e-159 565.8 471 65.6
PGSC0003DMG401012873 Solanum tuberosum HOM05D003391 ORTHO05D005563 4.7e-159 565.8 400 76.0
Ca_00789_v3 Cicer arietinum L. HOM05D003391 ORTHO05D005563 1.4e-155 554.3 370 76.8
PRCOL_00003915 Prasinoderma coloniale HOM05D003391 ORTHO05D005563 3.2e-152 543.1 676 46.3
AT1G50970 Arabidopsis thaliana HOM05D003391 ORTHO05D005563 1.1e-120 438.3 390 64.4
MCO12G450 Micromonas commoda HOM05D003391 ORTHO05D005563 5.6e-120 436.0 723 38.7
PGSC0003DMG402012873 Solanum tuberosum HOM05D003391 ORTHO05D005563 5.0e-113 412.9 262 79.8
SEGI_14368 Sequoiadendron giganteum HOM05D003391 ORTHO05D005563 5.2e-110 402.9 265 78.5
Psat1g171680 Pisum sativum HOM05D003391 ORTHO05D005563 1.6e-106 391.3 289 75.8
Ciclev10028552m.g Citrus clementina HOM05D003391 ORTHO05D005563 2.5e-104 384.0 231 83.5
Os01g0906200 Oryza sativa ssp. japonica HOM05D003391 ORTHO05D005563 5.2e-102 376.3 244 76.2
Cre06.g259600 Chlamydomonas reinhardtii HOM05D003391 ORTHO05D005563 8.6e-97 359.0 710 33.8
Cfa021970 Carpinus fangiana HOM05D003391 ORTHO05D125001 1.0e-68 265.8 660 30.3
SEGI_15776 Sequoiadendron giganteum HOM05D003391 ORTHO05D005563 6.7e-65 253.1 165 74.5
Lsat_1_v5_gn_8_87740 Lactuca sativa HOM05D003391 ORTHO05D019401 4.8e-63 246.9 202 69.3
Lsat_1_v5_gn_6_88940 Lactuca sativa HOM05D003391 ORTHO05D019401 3.2e-59 234.2 202 65.3
Actinidia03950 Actinidia chinensis HOM05D003391 ORTHO05D005563 8.5e-52 209.5 128 81.2
Atru.chr7.1997 Acer truncatum HOM05D003391 ORTHO05D019401 3.0e-49 201.1 162 72.8
Lalb_Chr15g0088511 Lupinus albus HOM05D003391 ORTHO05D019401 1.1e-40 172.6 137 73.0
HPP92_006005 Vanilla planifolia HOM05D003391 ORTHO05D005563 3.2e-35 154.5 102 71.6
SEGI_01209 Sequoiadendron giganteum HOM05D003391 ORTHO05D005563 1.2e-34 152.5 103 70.9
CARHR183160 Cardamine hirsuta HOM05D003391 ORTHO05D019401 1.4e-33 149.1 148 63.5
SEGI_30207 Sequoiadendron giganteum HOM05D003391 ORTHO05D005563 2.3e-33 148.3 89 73.0
SHI21339 Sapria himalayana HOM05D003391 ORTHO05D005563 2.6e-32 144.8 154 54.5
SEGI_03199 Sequoiadendron giganteum HOM05D003391 ORTHO05D019401 1.1e-30 139.4 92 81.5
RcHm_v2.0_Chr1g0364361 Rosa chinensis HOM05D003391 ORTHO05D005413 8.5e-28 129.8 157 49.7
Sp1g37750 Schrenkiella parvula HOM05D003391 ORTHO05D372635 3.2e-19 101.3 90 68.9
Manes.07G058173 Manihot esculenta HOM05D003391 ORTHO05D250310 2.3e-17 95.1 79 64.6
Manes.12G128950 Manihot esculenta HOM05D003391 ORTHO05D249565 2.3e-17 95.1 79 64.6
Oeu063006.1 Olea europaea HOM05D001351 ORTHO05D001203 8.8e-17 93.2 70 70.0
CARHR292060 Cardamine hirsuta HOM05D003391 ORTHO05D019401 1.5e-16 92.4 51 96.1
Manes.13G081678 Manihot esculenta HOM05D003391 ORTHO05D250639 2.0e-16 92.0 79 63.3
Dinv04581 Davidia involucrata HOM05D003391 ORTHO05D005563 1.2e-13 82.8 48 83.3
Manes.08G058900 Manihot esculenta HOM05D003391 ORTHO05D250822 7.8e-13 80.1 68 61.8
arahy.Tifrunner.gnm1.ann1.MF7AUF Arachis hypogaea HOM05D003391 ORTHO05D008505 5.0e-12 77.4 47 78.7
SHI21343 Sapria himalayana HOM05D000002 ORTHO05D000001 6.6e-12 77.0 63 71.4
CARHR041020 Cardamine hirsuta HOM05D003391 ORTHO05D013251 8.6e-12 76.6 48 77.1
SEGI_03483 Sequoiadendron giganteum HOM05D003391 ORTHO05D005563 2.8e-10 71.6 50 66.0
SalBow4G0084 Salvia bowleyana HOM05D000136 ORTHO05D000080 1.4e-09 69.3 48 70.8
ECA246G3223 Erigeron canadensis HOM05D001124 ORTHO05D001004 3.0e-09 68.2 46 78.3


User provided reference genes

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