Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR034800 Cardamine hirsuta HOM05D000104 ORTHO05D022220 2.8e-21 104.4 53 100.0
CARHR080930 Cardamine hirsuta HOM05D000104 ORTHO05D004059 7.9e-16 86.3 52 82.7
Aa31LG11G10990 Aethionema arabicum HOM05D000104 ORTHO05D004059 1.8e-15 85.1 52 80.8
Aa31LG5G16920 Aethionema arabicum HOM05D000104 ORTHO05D004059 1.8e-15 85.1 52 80.8
AL3G17350 Arabidopsis lyrata HOM05D000104 ORTHO05D004059 1.8e-15 85.1 52 80.8
AL6G29890 Arabidopsis lyrata HOM05D000104 ORTHO05D004059 1.8e-15 85.1 52 80.8
AT3G06400 Arabidopsis thaliana HOM05D000104 ORTHO05D004059 1.8e-15 85.1 52 80.8
AT5G18620 Arabidopsis thaliana HOM05D000104 ORTHO05D004059 1.8e-15 85.1 52 80.8
BcaB04g20383 Brassica carinata HOM05D000104 ORTHO05D004059 1.8e-15 85.1 52 80.8
BcaB08g36657 Brassica carinata HOM05D000104 ORTHO05D004059 1.8e-15 85.1 52 80.8
BcaC05g29814 Brassica carinata HOM05D000104 ORTHO05D004059 1.8e-15 85.1 52 80.8
BcaC05g30030 Brassica carinata HOM05D000104 ORTHO05D004059 1.8e-15 85.1 52 80.8
BcaC09g47892 Brassica carinata HOM05D000104 ORTHO05D004059 1.8e-15 85.1 52 80.8
A02p05050 Brassica napus HOM05D000104 ORTHO05D004059 1.8e-15 85.1 52 80.8
A05p41630 Brassica napus HOM05D000104 ORTHO05D004059 1.8e-15 85.1 52 80.8
A10p20940 Brassica napus HOM05D000104 ORTHO05D004059 1.8e-15 85.1 52 80.8
BNapus_Darmor_BZH_scaffold_118p00160 Brassica napus HOM05D000104 ORTHO05D004059 1.8e-15 85.1 52 80.8
C02p10100 Brassica napus HOM05D000104 ORTHO05D004059 1.8e-15 85.1 52 80.8
C05p60840 Brassica napus HOM05D000104 ORTHO05D004059 1.8e-15 85.1 52 80.8
C09p57830 Brassica napus HOM05D000104 ORTHO05D004059 1.8e-15 85.1 52 80.8
BolC1t05624H Brassica oleracea HOM05D000104 ORTHO05D004059 1.8e-15 85.1 52 80.8
BolC5t34741H Brassica oleracea HOM05D000104 ORTHO05D004059 1.8e-15 85.1 52 80.8
BolC9t58653H Brassica oleracea HOM05D000104 ORTHO05D004059 1.8e-15 85.1 52 80.8
BraA01t04441Z Brassica rapa HOM05D000104 ORTHO05D004059 1.8e-15 85.1 52 80.8
BraA05t22882Z Brassica rapa HOM05D000104 ORTHO05D004059 1.8e-15 85.1 52 80.8
BraA10t44159Z Brassica rapa HOM05D000104 ORTHO05D004059 1.8e-15 85.1 52 80.8
Carub.0003s0584 Capsella rubella HOM05D000104 ORTHO05D004059 1.8e-15 85.1 52 80.8
Carub.0006s1690 Capsella rubella HOM05D000104 ORTHO05D004059 1.8e-15 85.1 52 80.8
CARHR194400 Cardamine hirsuta HOM05D000104 ORTHO05D004059 1.8e-15 85.1 52 80.8
Thhalv10019967m.g Eutrema salsugineum HOM05D000104 ORTHO05D004059 1.8e-15 85.1 52 80.8
Sp3g05320 Schrenkiella parvula HOM05D000104 ORTHO05D004059 1.8e-15 85.1 52 80.8
Sp6g25710 Schrenkiella parvula HOM05D000104 ORTHO05D004059 1.8e-15 85.1 52 80.8
vmacro08189 Vaccinium macrocarpon HOM05D000104 ORTHO05D004059 3.9e-15 84.0 52 78.8
vmacro22484 Vaccinium macrocarpon HOM05D000104 ORTHO05D004059 3.9e-15 84.0 52 78.8
Atru.chr4.2776 Acer truncatum HOM05D000104 ORTHO05D004059 5.1e-15 83.6 52 78.8
ATR0706G043 Amborella trichopoda HOM05D000104 ORTHO05D004059 5.1e-15 83.6 52 78.8
arahy.Tifrunner.gnm1.ann1.380C72 Arachis hypogaea HOM05D000104 ORTHO05D004059 5.1e-15 83.6 52 78.8
arahy.Tifrunner.gnm1.ann1.8XLM1I Arachis hypogaea HOM05D000104 ORTHO05D004059 5.1e-15 83.6 52 78.8
arahy.Tifrunner.gnm1.ann1.QCS8A7 Arachis hypogaea HOM05D000104 ORTHO05D004059 5.1e-15 83.6 52 78.8
arahy.Tifrunner.gnm1.ann1.QF6VR4 Arachis hypogaea HOM05D000104 ORTHO05D004059 5.1e-15 83.6 52 78.8
CSS0038902 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D004059 5.1e-15 83.6 52 78.8
CANSAT78G2178 Cannabis sativa HOM05D000104 ORTHO05D004059 5.1e-15 83.6 52 78.8
CAN.G580.12 Capsicum annuum HOM05D000104 ORTHO05D004059 5.1e-15 83.6 52 78.8
Cpa.g.sc16.129 Carica papaya HOM05D000104 ORTHO05D004059 5.1e-15 83.6 52 78.8
CiPaw.01G152100 Carya illinoinensis HOM05D000104 ORTHO05D004059 5.1e-15 83.6 52 78.8
CiPaw.02G085600 Carya illinoinensis HOM05D000104 ORTHO05D004059 5.1e-15 83.6 52 78.8
CDE09G0260 Ceratophyllum demersum HOM05D000104 ORTHO05D004059 5.1e-15 83.6 52 78.8
Ca_00564_v3 Cicer arietinum L. HOM05D000104 ORTHO05D004059 5.1e-15 83.6 52 78.8
Ciclev10004220m.g Citrus clementina HOM05D000104 ORTHO05D004059 5.1e-15 83.6 52 78.8
Cc03_g02210 Coffea canephora HOM05D000104 ORTHO05D004059 5.1e-15 83.6 52 78.8
Haze_01251 Corylus avellana HOM05D000104 ORTHO05D004059 5.1e-15 83.6 52 78.8
Dinv38315 Davidia involucrata HOM05D000104 ORTHO05D004059 5.1e-15 83.6 52 78.8
Dinv44417 Davidia involucrata HOM05D000104 ORTHO05D004059 5.1e-15 83.6 52 78.8
Migut.N00114 Erythranthe guttata HOM05D000104 ORTHO05D004059 5.1e-15 83.6 52 78.8
Eucgr.H03855 Eucalyptus grandis HOM05D000104 ORTHO05D004059 5.1e-15 83.6 52 78.8
FvH4_4g17400 Fragaria vesca HOM05D000104 ORTHO05D004059 5.1e-15 83.6 52 78.8
FAN07G2499 Fragaria x ananassa HOM05D000104 ORTHO05D004059 5.1e-15 83.6 52 78.8
FAN12G3725 Fragaria x ananassa HOM05D000104 ORTHO05D004059 5.1e-15 83.6 52 78.8
FAN12G3941 Fragaria x ananassa HOM05D000104 ORTHO05D004059 5.1e-15 83.6 52 78.8
FAN17G2543 Fragaria x ananassa HOM05D000104 ORTHO05D004059 5.1e-15 83.6 52 78.8
Glyma.07G250700 Glycine max HOM05D000104 ORTHO05D004059 5.1e-15 83.6 52 78.8
Glyma.13G215900 Glycine max HOM05D000104 ORTHO05D004059 5.1e-15 83.6 52 78.8
Glyma.15G097000 Glycine max HOM05D000104 ORTHO05D004059 5.1e-15 83.6 52 78.8
Glyma.17G023600 Glycine max HOM05D000104 ORTHO05D004059 5.1e-15 83.6 52 78.8
HanXRQChr03g0080881 Helianthus annuus HOM05D000104 ORTHO05D004059 5.1e-15 83.6 52 78.8
Lsat_1_v5_gn_5_52080 Lactuca sativa HOM05D000104 ORTHO05D004059 5.1e-15 83.6 52 78.8
Lj6C670T12 Lonicera japonica HOM05D000104 ORTHO05D004059 5.1e-15 83.6 52 78.8
Lj4g0009367 Lotus japonicus HOM05D000104 ORTHO05D004059 5.1e-15 83.6 52 78.8
LjContig00389g0006961 Lotus japonicus HOM05D000104 ORTHO05D004059 5.1e-15 83.6 52 78.8
Lalb_Chr18g0055671 Lupinus albus HOM05D000104 ORTHO05D004059 5.1e-15 83.6 52 78.8
MBI18_g12430_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D004059 5.1e-15 83.6 52 78.8
Manes.03G191900 Manihot esculenta HOM05D000104 ORTHO05D004059 5.1e-15 83.6 52 78.8
Manes.15G015800 Manihot esculenta HOM05D000104 ORTHO05D004059 5.1e-15 83.6 52 78.8
Medtr2g020000 Medicago truncatula HOM05D000104 ORTHO05D004059 5.1e-15 83.6 52 78.8
Nn3g21341 Nelumbo nucifera HOM05D000104 ORTHO05D004059 5.1e-15 83.6 52 78.8
Nitab4.5_0000829g0150 Nicotiana tabacum HOM05D000104 ORTHO05D004059 5.1e-15 83.6 52 78.8
Nitab4.5_0002986g0070 Nicotiana tabacum HOM05D000104 ORTHO05D004059 5.1e-15 83.6 52 78.8
Os05g0150300 Oryza sativa ssp. japonica HOM05D000104 ORTHO05D004059 5.1e-15 83.6 52 78.8
PSO210G7761 Papaver somniferum HOM05D000104 ORTHO05D004059 5.1e-15 83.6 52 78.8
PSO832G0743 Papaver somniferum HOM05D000104 ORTHO05D004059 5.1e-15 83.6 52 78.8
Peaxi162Scf00033g01321 Petunia axillaris HOM05D000104 ORTHO05D004059 5.1e-15 83.6 52 78.8
Peaxi162Scf00386g00817 Petunia axillaris HOM05D000104 ORTHO05D004059 5.1e-15 83.6 52 78.8
Phvul.006G162200 Phaseolus vulgaris HOM05D000104 ORTHO05D004059 5.1e-15 83.6 52 78.8
Psat1g187480 Pisum sativum HOM05D000104 ORTHO05D004059 5.1e-15 83.6 52 78.8
Potri.008G205600 Populus trichocarpa HOM05D000104 ORTHO05D004059 5.1e-15 83.6 52 78.8
Potri.010G021400 Populus trichocarpa HOM05D000104 ORTHO05D004059 5.1e-15 83.6 52 78.8
Prupe.1G140700 Prunus persica HOM05D000104 ORTHO05D004059 5.1e-15 83.6 52 78.8
QL06p007627 Quercus lobata HOM05D000104 ORTHO05D004059 5.1e-15 83.6 52 78.8
Rhsim04G0217800 Rhododendron simsii HOM05D000104 ORTHO05D004059 5.1e-15 83.6 52 78.8
RcHm_v2.0_Chr4g0421321 Rosa chinensis HOM05D000104 ORTHO05D004059 5.1e-15 83.6 52 78.8
Sabra10G0016100 Salix brachista HOM05D000104 ORTHO05D004059 5.1e-15 83.6 52 78.8
SalBow2G0378 Salvia bowleyana HOM05D000104 ORTHO05D004059 5.1e-15 83.6 52 78.8
SEGI_06653 Sequoiadendron giganteum HOM05D000104 ORTHO05D004059 5.1e-15 83.6 52 78.8
PGSC0003DMG400022675 Solanum tuberosum HOM05D000104 ORTHO05D004059 5.1e-15 83.6 52 78.8
SGA_v2.0_scaffold155G37253 Striga asiatica HOM05D000104 ORTHO05D004059 5.1e-15 83.6 52 78.8
SGA_v2.0_scaffold57G20227 Striga asiatica HOM05D000104 ORTHO05D004059 5.1e-15 83.6 52 78.8
THA.LOC104802723 Tarenaya hassleriana HOM05D000104 ORTHO05D004059 5.1e-15 83.6 52 78.8
TPR.G1518 Trifolium pratense HOM05D000104 ORTHO05D004059 5.1e-15 83.6 52 78.8
TWI53G0508 Tripterygium wilfordii HOM05D000104 ORTHO05D004059 5.1e-15 83.6 52 78.8
TWI53G1517 Tripterygium wilfordii HOM05D000104 ORTHO05D004059 5.1e-15 83.6 52 78.8
TAR636G2253 Trochodendron aralioides HOM05D000104 ORTHO05D004059 5.1e-15 83.6 52 78.8
HPP92_013699 Vanilla planifolia HOM05D000104 ORTHO05D004059 5.1e-15 83.6 52 78.8
VMungo0540G0816 Vigna mungo HOM05D000104 ORTHO05D004059 5.1e-15 83.6 52 78.8
VMungo1215G1275 Vigna mungo HOM05D000104 ORTHO05D004059 5.1e-15 83.6 52 78.8
GSVIVG01017791001 Vitis vinifera HOM05D000104 ORTHO05D004059 5.1e-15 83.6 52 78.8
Aqoxy2G03083 Aquilegia oxysepala HOM05D000104 ORTHO05D004059 6.7e-15 83.2 52 78.8
ECA240G3320 Erigeron canadensis HOM05D001942 ORTHO05D004059 6.7e-15 83.2 52 78.8
Lalb_Chr12g0196491 Lupinus albus HOM05D000104 ORTHO05D004059 6.7e-15 83.2 52 78.8
Oeu029265.2 Olea europaea HOM05D000104 ORTHO05D004059 6.7e-15 83.2 52 78.8
Rhsim02G0012600 Rhododendron simsii HOM05D000104 ORTHO05D004059 6.7e-15 83.2 52 78.8
Sabra08G0156300 Salix brachista HOM05D000104 ORTHO05D004059 6.7e-15 83.2 52 76.9
vmacro15253 Vaccinium macrocarpon HOM05D000104 ORTHO05D004059 6.7e-15 83.2 52 78.8
SMO351G0071 Selaginella moellendorffii HOM05D000104 ORTHO05D004059 8.7e-15 82.8 52 78.8
Solyc01g067390.4 Solanum lycopersicum HOM05D000104 ORTHO05D004059 8.7e-15 82.8 52 78.8
Sopen01g029280 Solanum pennellii HOM05D000104 ORTHO05D004059 8.7e-15 82.8 52 78.8
Actinidia01938 Actinidia chinensis HOM05D000104 ORTHO05D004059 1.1e-14 82.4 52 76.9
Ah.04g153940 Amaranthus hybridus HOM05D000104 ORTHO05D004059 1.1e-14 82.4 52 78.8
Ah.13g074500 Amaranthus hybridus HOM05D000104 ORTHO05D004059 1.1e-14 82.4 52 78.8
EL10Ac3g06549 Beta vulgaris HOM05D000104 ORTHO05D004059 1.1e-14 82.4 52 78.8
CSS0045860 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D004059 1.1e-14 82.4 52 76.9
CSS0047645 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D004059 1.1e-14 82.4 52 76.9
CAN.G256.14 Capsicum annuum HOM05D000104 ORTHO05D004059 1.1e-14 82.4 52 76.9
AUR62042647 Chenopodium quinoa HOM05D000104 ORTHO05D004059 1.1e-14 82.4 52 78.8
AUR62043504 Chenopodium quinoa HOM05D000104 ORTHO05D004059 1.1e-14 82.4 52 78.8
Thhalv10012527m.g Eutrema salsugineum HOM05D000104 ORTHO05D004059 1.1e-14 82.4 52 76.9
FAN22G2315 Fragaria x ananassa HOM05D000104 ORTHO05D004059 1.1e-14 82.4 52 76.9
Lj3C812G10 Lonicera japonica HOM05D000104 ORTHO05D004059 1.1e-14 82.4 52 76.9
Phvul.003G101700 Phaseolus vulgaris HOM05D000104 ORTHO05D004059 1.1e-14 82.4 52 76.9
Hund20594 Selenicereus undatus HOM05D000104 ORTHO05D004059 1.1e-14 82.4 52 78.8
Hund24922 Selenicereus undatus HOM05D000104 ORTHO05D004059 1.1e-14 82.4 52 78.8
Sc19g0004980 Simmondsia chinensis HOM05D000104 ORTHO05D004059 1.1e-14 82.4 52 78.8
Solyc06g054560.3 Solanum lycopersicum HOM05D000104 ORTHO05D004059 1.1e-14 82.4 52 76.9
Sopen06g019630 Solanum pennellii HOM05D000104 ORTHO05D004059 1.1e-14 82.4 52 76.9
PGSC0003DMG400030785 Solanum tuberosum HOM05D000104 ORTHO05D004059 1.1e-14 82.4 52 76.9
Lalb_Chr20g0118061 Lupinus albus HOM05D000104 ORTHO05D004059 1.5e-14 82.0 52 76.9
MD13G1172500 Malus domestica HOM05D000104 ORTHO05D004059 1.5e-14 82.0 52 76.9
MD16G1173900 Malus domestica HOM05D000104 ORTHO05D004059 1.5e-14 82.0 52 76.9
Mapoly0004s0169 Marchantia polymorpha HOM05D000104 ORTHO05D004059 1.5e-14 82.0 52 78.8
THA.LOC104818846 Tarenaya hassleriana HOM05D000104 ORTHO05D004059 1.5e-14 82.0 52 76.9
TAR362G0596 Trochodendron aralioides HOM05D000104 ORTHO05D004059 1.5e-14 82.0 52 76.9
Oeu026198.1 Olea europaea HOM05D000104 ORTHO05D004059 1.9e-14 81.6 52 76.9
SalBow5G1000 Salvia bowleyana HOM05D000104 ORTHO05D004059 1.9e-14 81.6 52 76.9
TWI73G0509 Tripterygium wilfordii HOM05D000104 ORTHO05D004059 1.9e-14 81.6 52 76.9
Ca_21543_v3 Cicer arietinum L. HOM05D000104 ORTHO05D004059 2.5e-14 81.3 52 75.0
ClCG06G005340 Citrullus lanatus HOM05D000104 ORTHO05D004059 2.5e-14 81.3 52 76.9
MELO3C021353.2 Cucumis melo HOM05D000104 ORTHO05D004059 2.5e-14 81.3 52 76.9
Duzib052G0958 Durio zibethinus HOM05D000104 ORTHO05D004059 2.5e-14 81.3 52 76.9
Duzib151G0745 Durio zibethinus HOM05D000104 ORTHO05D004059 2.5e-14 81.3 52 76.9
Gohir.A02G047300 Gossypium hirsutum HOM05D000104 ORTHO05D004059 2.5e-14 81.3 52 76.9
Gohir.A09G240700 Gossypium hirsutum HOM05D000104 ORTHO05D004059 2.5e-14 81.3 52 76.9
Gohir.A10G161000 Gossypium hirsutum HOM05D000104 ORTHO05D004059 2.5e-14 81.3 52 76.9
Gohir.D02G052600 Gossypium hirsutum HOM05D000104 ORTHO05D004059 2.5e-14 81.3 52 76.9
Gohir.D10G167400 Gossypium hirsutum HOM05D000104 ORTHO05D004059 2.5e-14 81.3 52 76.9
Gorai.005G058400 Gossypium raimondii HOM05D000104 ORTHO05D004059 2.5e-14 81.3 52 76.9
Gorai.011G187000 Gossypium raimondii HOM05D000104 ORTHO05D004059 2.5e-14 81.3 52 76.9
Medtr4g118845 Medicago truncatula HOM05D000104 ORTHO05D004059 2.5e-14 81.3 52 75.0
Nitab4.5_0001459g0150 Nicotiana tabacum HOM05D000104 ORTHO05D004059 2.5e-14 81.3 52 76.9
Nitab4.5_0002148g0030 Nicotiana tabacum HOM05D000104 ORTHO05D004059 2.5e-14 81.3 52 76.9
Psat4g029280 Pisum sativum HOM05D000104 ORTHO05D004059 2.5e-14 81.3 52 75.0
Sed0025792 Sechium edule HOM05D000104 ORTHO05D004059 2.5e-14 81.3 52 76.9
Thecc.04G279200 Theobroma cacao HOM05D000104 ORTHO05D004059 2.5e-14 81.3 52 76.9
TPR.G28791 Trifolium pratense HOM05D000104 ORTHO05D004059 2.5e-14 81.3 52 75.0
Aqoxy5G00651 Aquilegia oxysepala HOM05D000104 ORTHO05D004059 3.3e-14 80.9 52 75.0
MSTRG.24782 Avicennia marina HOM05D000104 ORTHO05D004059 3.3e-14 80.9 52 75.0
Gohir.D09G241400 Gossypium hirsutum HOM05D000104 ORTHO05D004059 3.3e-14 80.9 52 75.0
Gorai.006G264900 Gossypium raimondii HOM05D000104 ORTHO05D004059 3.3e-14 80.9 52 75.0
Os01g0367900 Oryza sativa ssp. japonica HOM05D000104 ORTHO05D004059 3.3e-14 80.9 52 75.0
Zm00001eb131790 Zea mays HOM05D000104 ORTHO05D004059 3.3e-14 80.9 52 75.0
Zm00001eb341650 Zea mays HOM05D000104 ORTHO05D004059 3.3e-14 80.9 52 75.0
Pp3c11_18940 Physcomitrium patens HOM05D000104 ORTHO05D004059 4.3e-14 80.5 52 78.8
Pp3c7_3340 Physcomitrium patens HOM05D000104 ORTHO05D004059 4.3e-14 80.5 52 78.8
SMO340G0322 Selaginella moellendorffii HOM05D000104 ORTHO05D004059 4.3e-14 80.5 52 75.0
CBR_g48123 Chara braunii HOM05D000104 ORTHO05D004059 5.6e-14 80.1 52 76.9
Migut.G00196 Erythranthe guttata HOM05D000104 ORTHO05D004059 5.6e-14 80.1 52 75.0
CsaV3_6G017380 Cucumis sativus L. HOM05D000104 ORTHO05D004059 7.4e-14 79.7 52 75.0
Psat4g061480 Pisum sativum HOM05D000104 ORTHO05D022220 7.4e-14 79.7 52 75.0
Sc25g0004720 Simmondsia chinensis HOM05D000104 ORTHO05D004059 9.6e-14 79.3 52 75.0
Sed0007625 Sechium edule HOM05D000104 ORTHO05D004059 1.6e-13 78.6 52 75.0
AagrBONN_evm.TU.Sc2ySwM_362.2646 Anthoceros agrestis HOM05D000104 ORTHO05D004059 4.8e-13 77.0 52 71.2
MELO3C028706.2 Cucumis melo HOM05D000104 ORTHO05D022220 4.8e-13 77.0 52 73.1
Cre12.g508150 Chlamydomonas reinhardtii HOM05D000104 ORTHO05D004059 1.4e-09 65.5 52 61.5
Lsat_1_v5_gn_3_113040 Lactuca sativa HOM05D000104 ORTHO05D022220 5.1e-07 57.0 47 57.4
MCO16G472 Micromonas commoda HOM05D000104 ORTHO05D004059 6.7e-07 56.6 53 58.5
MCO16G473 Micromonas commoda HOM05D000104 ORTHO05D004059 6.7e-07 56.6 53 58.5
PRCOL_00006572 Prasinoderma coloniale HOM05D000104 ORTHO05D004059 8.7e-07 56.2 52 53.8
CARHR182060 Cardamine hirsuta HOM05D000104 ORTHO05D022220 1.1e-06 55.8 35 80.0


User provided reference genes

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