Gene: Solyc01g067390.4

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc01g067390.4
  • Transcript Identifier Solyc01g067390.4.1
  • Gene Type Coding gene
  • Location SL4.0ch01 : 68634664-68645224 : positive

Gene Family Information

  • ID HOM05D000104
  • #Genes/#Species 3097/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc01g067390.4.1
  • uniprot A0A3Q7EFU0
  • gene_id Solyc01g067390

Descriptions

  • Description RNA helicase DEAH-box1
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009553
ISO
PLAZA Integrative Orthologyembryo sac development AT3G06400
GO:0010228
ISO
PLAZA Integrative Orthologyvegetative to reproductive phase transition of meristem AT5G18620
GO:1900036
ISO
PLAZA Integrative Orthologypositive regulation of cellular response to heat AT5G18620
GO:0009561
ISO
PLAZA Integrative Orthologymegagametogenesis AT3G06400
GO:0048510
ISO
PLAZA Integrative Orthologyregulation of timing of transition from vegetative to reproductive phase AT3G06400
GO:0034728
ISO
PLAZA Integrative Orthologynucleosome organization AT3G06400
GO:0051510
ISO
PLAZA Integrative Orthologyregulation of unidimensional cell growth AT3G06400
GO:0016584
IBA
GOA Databasenucleosome positioning
GO:0043044
IEA
GOA DatabaseATP-dependent chromatin remodeling
GO:0043044
IEA
InterProATP-dependent chromatin remodeling
GO:0016070
IDA
Gene OntologyRNA metabolic process1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003677
IBA
IEA
GOA DatabaseDNA binding
GO:0003677
IEA
InterProDNA binding
GO:0043565
ISO
PLAZA Integrative Orthologysequence-specific DNA binding AT3G06400
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT5G18620
GO:0008094
IBA
GOA DatabaseATPase, acting on DNA
GO:0031491
IEA
GOA Databasenucleosome binding
GO:0031491
IEA
InterPronucleosome binding
GO:0003724
IDA
Gene OntologyRNA helicase activity1
GO:0070615
IEA
GOA Databasenucleosome-dependent ATPase activity
GO:0070615
IEA
InterPronucleosome-dependent ATPase activity
GO:0005524
IEA
GOA DatabaseATP binding
GO:0005524
IEA
InterProATP binding
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0000166
IEA
GOA Databasenucleotide binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IBA
IEA
GOA Databasenucleus
GO:0005634
IEA
InterPronucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001650 Helicase, C-terminal
IPR000330 SNF2, N-terminal
IPR015194 ISWI, HAND domain
IPR036306 ISWI, HAND domain superfamily
IPR044754 Isw1/2, N-terminal
IPR015195 SLIDE domain
IPR009057 Homeobox-like domain superfamily
IPR014001 Helicase superfamily 1/2, ATP-binding domain
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR038718 SNF2-like, N-terminal domain superfamily
IPR001005 SANT/Myb domain
Mapman id Description
12.4.2.1 Chromatin organisation.nucleosome remodeling.ISWI chromatin remodeling complexes.shared ATPase component (CHR11/CHR17)