Gene: Potri.008G205600
General Information
Structural Information
- Species Populus trichocarpa
- Gene Identifier Potri.008G205600
- Transcript Identifier Potri.008G205600.1
- Gene Type Coding gene
- Location Chr08 : 15060709-15068407 : positive
Gene Family Information
- ID HOM05D000104
- #Genes/#Species 3097/100
- Phylogenetic origin
- ID ORTHO05D004059
- #Genes/#Species 193/95
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- id Potri.008G205600.v4.1
- pacid 42807644
- synonym POPTR_0008s21030
Descriptions
- Description K11654 - SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:3.6.4.-] (SMARCA5, SNF2H, ISWI)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0043044 | IEA | InterPro | ATP-dependent chromatin remodeling | |
| GO:0016070 | ISO | PLAZA Integrative Orthology | RNA metabolic process | Solyc01g067390.4 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003677 | IEA | InterPro | DNA binding | |
| GO:0031491 | IEA | InterPro | nucleosome binding | |
| GO:0005524 | IEA | InterPro | ATP binding | |
| GO:0070615 | IEA | InterPro | nucleosome-dependent ATPase activity | |
| GO:0003724 | ISO | PLAZA Integrative Orthology | RNA helicase activity | Solyc01g067390.4 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IEA | InterPro | nucleus |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR001650 | Helicase, C-terminal |
| IPR036306 | ISWI, HAND domain superfamily |
| IPR015194 | ISWI, HAND domain |
| IPR000330 | SNF2, N-terminal |
| IPR009057 | Homeobox-like domain superfamily |
| IPR014001 | Helicase superfamily 1/2, ATP-binding domain |
| IPR044754 | Isw1/2, N-terminal |
| IPR015195 | SLIDE domain |
| IPR001005 | SANT/Myb domain |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| IPR038718 | SNF2-like, N-terminal domain superfamily |
| Mapman id | Description |
|---|---|
| 12.4.2.1 | Chromatin organisation.nucleosome remodeling.ISWI chromatin remodeling complexes.shared ATPase component (CHR11/CHR17) |