Gene: AT5G18620

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G18620
  • Transcript Identifier AT5G18620.1
  • Gene Type Coding gene
  • Location Chr5 : 6196190-6202058 : negative

Gene Family Information

  • ID HOM05D000104
  • #Genes/#Species 3097/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G18620.1
  • symbol CHR17
  • uniprot F4JY24

Descriptions

  • Description chromatin remodeling factor17
  • Computational description chromatin remodeling factor17 (CHR17); FUNCTIONS IN: in 7 functions; INVOLVED IN: ATP-dependent chromatin remodeling, chromatin remodeling; LOCATED IN: nucleus, chromatin remodeling complex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, nucleosome remodelling ISWI, HAND domain (InterPro:IPR015194), SANT, eukarya (InterPro:IPR017884), SNF2-related (InterPro:IPR000330), SANT, DNA-binding (InterPro:IPR001005), SLIDE (InterPro:IPR015195), Homeodomain-like (InterPro:IPR009057), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: chromatin-remodeling protein 11 (TAIR:AT3G06400.2); Has 25189 Blast hits to 20364 proteins in 2195 species: Archae - 142; Bacteria - 5972; Metazoa - 6064; Fungi - 4945; Plants - 1903; Viruses - 481; Other Eukaryotes - 5682 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0043044
IEA
GOA DatabaseATP-dependent chromatin remodeling
GO:0043044
IEA
InterProATP-dependent chromatin remodeling
GO:0006325
IEA
GOA Databasechromatin organization
GO:0016584
IMP, IGI
IBA
Gene Ontologynucleosome positioning1 2
GO:1900036
IMP
Gene Ontologypositive regulation of cellular response to heat3
GO:0010228
IGI
Gene Ontologyvegetative to reproductive phase transition of meristem4
GO:0006338
IEA
Gene Ontologychromatin remodeling

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003677
IBA
IEA
Gene OntologyDNA binding1
GO:0003677
IEA
InterProDNA binding
GO:0070615
IEA
GOA Databasenucleosome-dependent ATPase activity
GO:0070615
IEA
InterPronucleosome-dependent ATPase activity
GO:0031491
IEA
Gene Ontologynucleosome binding
GO:0031491
IEA
InterPronucleosome binding
GO:0005524
IEA
GOA DatabaseATP binding
GO:0005524
IEA
InterProATP binding
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0008094
IBA
Gene OntologyATPase, acting on DNA1
GO:0005515
IPI
Gene Ontologyprotein binding4
GO:0140658
IEA
Gene OntologyATPase-dependent chromatin remodeler activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM, IBA
Gene Ontologynucleus1
GO:0005634
IEA
InterPronucleus
GO:0009536
HDA
Gene Ontologyplastid5
GO:0005829
RCA
Gene Ontologycytosol6

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR009057 Homeobox-like domain superfamily
IPR044754 Isw1/2, N-terminal
IPR001650 Helicase, C-terminal
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR036306 ISWI, HAND domain superfamily
IPR001005 SANT/Myb domain
IPR014001 Helicase superfamily 1/2, ATP-binding domain
IPR038718 SNF2-like, N-terminal domain superfamily
IPR015194 ISWI, HAND domain
IPR000330 SNF2, N-terminal
IPR015195 SLIDE domain
Mapman id Description
12.4.2.1 Chromatin organisation.nucleosome remodeling.ISWI chromatin remodeling complexes.shared ATPase component (CHR11/CHR17)