Gene: Sopen01g029280

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen01g029280
  • Transcript Identifier Sopen01g029280.1
  • Gene Type Coding gene
  • Location Spenn-ch01 : 85805725-85816960 : positive

Gene Family Information

  • ID HOM05D000104
  • #Genes/#Species 3097/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen01g029280.1

Descriptions

  • Description Encodes a SWI2/SNF2 chromatin remodeling protein belonging to the ISWI family. Involved in nuclear proliferation during megagametogenesis and cell expansion in the sporophyte. Constitutively expressed. RNAi induced loss of function in megagametogenesis results in female sterility.35S:RNAi plants have reduced stature. | chromatin-remodeling protein 11 (CHR11) | FUNCTIONS IN: in 7 functions | INVOLVED IN: cell growth, embryo sac development | LOCATED IN: nucleus, chromatin remodeling complex | EXPRESSED IN: 24 plant structures | EXPRESSED DURING: 15 growth stages | CONTAINS InterPro DOMAIN/s: ATPase, nucleosome remodelling ISWI, HAND domain , SANT, eukarya , SNF2-related , SANT, DNA-binding , SLIDE , Homeodomain-like , DEAD-like helicase, N-terminal , DNA/RNA helicase, C-terminal , Helicase, superfamily 1/2, ATP-binding domain | BEST Arabidopsis thaliana protein match is: chromatin remodeling factor17 ., Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice), SNF2-related
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009553
ISO
PLAZA Integrative Orthologyembryo sac development AT3G06400
GO:0016584
ISO
PLAZA Integrative Orthologynucleosome positioning AT5G18620
GO:0010228
ISO
PLAZA Integrative Orthologyvegetative to reproductive phase transition of meristem AT5G18620
GO:1900036
ISO
PLAZA Integrative Orthologypositive regulation of cellular response to heat AT5G18620
GO:0009561
ISO
PLAZA Integrative Orthologymegagametogenesis AT3G06400
GO:0048510
ISO
PLAZA Integrative Orthologyregulation of timing of transition from vegetative to reproductive phase AT3G06400
GO:0016070
ISO
PLAZA Integrative OrthologyRNA metabolic process Solyc01g067390.4
GO:0034728
ISO
PLAZA Integrative Orthologynucleosome organization AT3G06400
GO:0051510
ISO
PLAZA Integrative Orthologyregulation of unidimensional cell growth AT3G06400
GO:0043044
IEA
InterProATP-dependent chromatin remodeling

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT5G18620
GO:0043565
ISO
PLAZA Integrative Orthologysequence-specific DNA binding AT3G06400
GO:0003724
ISO
PLAZA Integrative OrthologyRNA helicase activity Solyc01g067390.4
GO:0005524
IEA
InterProATP binding
GO:0031491
IEA
InterPronucleosome binding
GO:0003677
IEA
InterProDNA binding
GO:0070615
IEA
InterPronucleosome-dependent ATPase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
InterPronucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001650 Helicase, C-terminal
IPR001005 SANT/Myb domain
IPR000330 SNF2, N-terminal
IPR009057 Homeobox-like domain superfamily
IPR015194 ISWI, HAND domain
IPR036306 ISWI, HAND domain superfamily
IPR044754 Isw1/2, N-terminal
IPR015195 SLIDE domain
IPR014001 Helicase superfamily 1/2, ATP-binding domain
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR038718 SNF2-like, N-terminal domain superfamily
Mapman id Description
12.4.2.1 Chromatin organisation.nucleosome remodeling.ISWI chromatin remodeling complexes.shared ATPase component (CHR11/CHR17)