Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR033660 Cardamine hirsuta HOM05D005655 ORTHO05D007386 3.2e-96 355.1 184 100.0
AL1G48650 Arabidopsis lyrata HOM05D005655 ORTHO05D007386 2.0e-74 282.7 183 85.2
AT1G34150 Arabidopsis thaliana HOM05D005655 ORTHO05D007386 1.7e-73 279.6 183 84.2
Sp1g29390 Schrenkiella parvula HOM05D005655 ORTHO05D007386 4.6e-71 271.6 180 82.8
Thhalv10007608m.g Eutrema salsugineum HOM05D005655 ORTHO05D007386 1.1e-69 266.9 182 78.6
Carub.0001s3222 Capsella rubella HOM05D005655 ORTHO05D007386 7.3e-69 264.2 183 80.9
BcaB07g33038 Brassica carinata HOM05D005655 ORTHO05D007386 1.2e-66 256.9 172 82.6
Aa31LG6G8320 Aethionema arabicum HOM05D005655 ORTHO05D000003 6.6e-62 241.1 182 73.1
A09p32350 Brassica napus HOM05D005655 ORTHO05D000003 8.1e-60 234.2 169 79.3
C06p11890 Brassica napus HOM05D005655 ORTHO05D000003 1.5e-58 229.9 167 77.2
BcaC08g43808 Brassica carinata HOM05D005655 ORTHO05D007386 3.4e-58 228.8 172 75.6
BolC6t36321H Brassica oleracea HOM05D005655 ORTHO05D000003 3.4e-58 228.8 172 75.6
THA.LOC104816107 Tarenaya hassleriana HOM05D005655 ORTHO05D007386 1.1e-53 213.8 166 68.1
CANSAT25G2324 Cannabis sativa HOM05D005655 ORTHO05D007386 1.2e-42 177.2 155 63.9
Gorai.005G076300 Gossypium raimondii HOM05D005655 ORTHO05D007386 2.2e-41 172.9 195 50.3
Duzib093G0465 Durio zibethinus HOM05D005655 ORTHO05D007386 2.5e-40 169.5 167 56.3
Gohir.D02G067400 Gossypium hirsutum HOM05D005655 ORTHO05D007386 3.2e-40 169.1 195 48.7
arahy.Tifrunner.gnm1.ann1.A75B0U Arachis hypogaea HOM05D005655 ORTHO05D007386 7.1e-40 167.9 162 59.3
Thecc.10G182000 Theobroma cacao HOM05D005655 ORTHO05D007386 1.2e-39 167.2 165 56.4
arahy.Tifrunner.gnm1.ann1.3U6NKV Arachis hypogaea HOM05D005655 ORTHO05D007386 1.6e-39 166.8 160 58.1
GSVIVG01013676001 Vitis vinifera HOM05D005655 ORTHO05D007386 1.6e-39 166.8 174 55.2
Lalb_Chr02g0141641 Lupinus albus HOM05D005655 ORTHO05D007386 2.7e-39 166.0 144 61.8
TPR.G23158 Trifolium pratense HOM05D005655 ORTHO05D007386 3.5e-39 165.6 163 57.7
Atru.chr13.1965 Acer truncatum HOM05D005655 ORTHO05D007386 2.3e-38 162.9 156 58.3
Manes.02G186000 Manihot esculenta HOM05D005655 ORTHO05D007386 2.3e-38 162.9 155 57.4
Glyma.20G171700 Glycine max HOM05D005655 ORTHO05D007386 3.0e-38 162.5 152 58.6
Ciclev10001190m.g Citrus clementina HOM05D005655 ORTHO05D007386 3.9e-38 162.2 161 53.4
TWI74G0660 Tripterygium wilfordii HOM05D005655 ORTHO05D007386 5.1e-38 161.8 150 58.0
MELO3C019957.2 Cucumis melo HOM05D005655 ORTHO05D007386 6.7e-38 161.4 181 47.5
CsaV3_6G004840 Cucumis sativus L. HOM05D005655 ORTHO05D007386 8.7e-38 161.0 181 47.5
Sc13g0008190 Simmondsia chinensis HOM05D005655 ORTHO05D007386 8.7e-38 161.0 175 53.7
RcHm_v2.0_Chr6g0273621 Rosa chinensis HOM05D005655 ORTHO05D007386 1.1e-37 160.6 173 54.3
Medtr1g097390 Medicago truncatula HOM05D005655 ORTHO05D007386 1.5e-37 160.2 149 60.4
Prupe.8G045000 Prunus persica HOM05D005655 ORTHO05D007386 2.5e-37 159.5 155 57.4
PGR042G2919 Punica granatum HOM05D005655 ORTHO05D007386 2.5e-37 159.5 160 51.9
Lsat_1_v5_gn_1_5920 Lactuca sativa HOM05D005655 ORTHO05D007386 3.3e-37 159.1 180 51.1
Hund26667 Selenicereus undatus HOM05D005655 ORTHO05D007386 3.3e-37 159.1 187 45.5
Ca_10644_v3 Cicer arietinum L. HOM05D005655 ORTHO05D007386 2.1e-36 156.4 149 58.4
QL02p036335 Quercus lobata HOM05D005655 ORTHO05D007386 2.1e-36 156.4 167 53.9
Solyc04g072140.4 Solanum lycopersicum HOM05D005655 ORTHO05D007386 2.1e-36 156.4 158 53.8
FvH4_2g12780 Fragaria vesca HOM05D005655 ORTHO05D007386 2.8e-36 156.0 154 57.8
Sopen04g028310 Solanum pennellii HOM05D005655 ORTHO05D007386 2.8e-36 156.0 164 53.0
PGSC0003DMG400031154 Solanum tuberosum HOM05D005655 ORTHO05D007386 2.8e-36 156.0 158 53.8
Dinv41018 Davidia involucrata HOM05D005655 ORTHO05D007386 4.8e-36 155.2 171 51.5
Glyma.10G220000 Glycine max HOM05D005655 ORTHO05D007386 4.8e-36 155.2 159 55.3
HanXRQChr04g0115611 Helianthus annuus HOM05D005655 ORTHO05D007386 6.2e-36 154.8 194 46.4
Nitab4.5_0001000g0130 Nicotiana tabacum HOM05D005655 ORTHO05D007386 6.2e-36 154.8 158 51.3
CAN.G564.32 Capsicum annuum HOM05D005655 ORTHO05D007386 1.1e-35 154.1 148 56.8
Cfa018255 Carpinus fangiana HOM05D005655 ORTHO05D007386 1.1e-35 154.1 171 55.0
EL10Ac1g01637 Beta vulgaris HOM05D005655 ORTHO05D007386 2.4e-35 152.9 186 46.8
Nitab4.5_0000433g0050 Nicotiana tabacum HOM05D005655 ORTHO05D007386 3.1e-35 152.5 158 50.6
Rhsim06G0093900 Rhododendron simsii HOM05D005655 ORTHO05D007386 5.3e-35 151.8 165 50.9
CSS0015534 Camellia sinensis var. sinensis HOM05D005655 ORTHO05D007386 6.9e-35 151.4 177 50.8
Lj5g0012902 Lotus japonicus HOM05D005655 ORTHO05D007386 6.9e-35 151.4 144 57.6
Potri.002G061650 Populus trichocarpa HOM05D005655 ORTHO05D007386 1.2e-34 150.6 157 52.9
TAR625G0054 Trochodendron aralioides HOM05D005655 ORTHO05D007386 1.2e-34 150.6 194 45.4
Phvul.007G085300 Phaseolus vulgaris HOM05D005655 ORTHO05D007386 1.5e-34 150.2 165 53.9
MD05G1036800 Malus domestica HOM05D005655 ORTHO05D007386 2.0e-34 149.8 149 56.4
Actinidia17755 Actinidia chinensis HOM05D005655 ORTHO05D007386 2.6e-34 149.4 168 51.2
CSS0031675 Camellia sinensis var. sinensis HOM05D005655 ORTHO05D007386 3.4e-34 149.1 177 50.8
SalBow6G4612 Salvia bowleyana HOM05D005655 ORTHO05D007386 3.4e-34 149.1 189 46.0
Hma1.2p1_0358F.1_g134900 Hydrangea macrophylla HOM05D005655 ORTHO05D007386 4.5e-34 148.7 177 49.7
Hma1.2p1_0358F.1_g134910 Hydrangea macrophylla HOM05D005655 ORTHO05D007386 4.5e-34 148.7 177 49.7
Nn5g28881 Nelumbo nucifera HOM05D005655 ORTHO05D007386 7.6e-34 147.9 196 42.9
Sed0016594 Sechium edule HOM05D005655 ORTHO05D007386 1.7e-33 146.7 171 46.8
Eucgr.F02671 Eucalyptus grandis HOM05D005655 ORTHO05D007386 3.8e-33 145.6 158 48.1
PSO210G7095 Papaver somniferum HOM05D005655 ORTHO05D007386 3.2e-32 142.5 182 47.8
MSTRG.22119 Avicennia marina HOM05D005655 ORTHO05D007386 7.2e-32 141.4 166 45.2
Migut.N02937 Erythranthe guttata HOM05D005655 ORTHO05D007386 7.2e-32 141.4 173 45.1
Eucgr.J00222 Eucalyptus grandis HOM05D005655 ORTHO05D007386 7.2e-32 141.4 158 47.5
Eucgr.I00104 Eucalyptus grandis HOM05D005655 ORTHO05D007386 9.3e-32 141.0 160 49.4
PSO170G2558 Papaver somniferum HOM05D005655 ORTHO05D007386 9.3e-32 141.0 180 47.8
Cc10_g06370 Coffea canephora HOM05D005655 ORTHO05D007386 6.1e-31 138.3 175 46.9
Sabra02G0049900 Salix brachista HOM05D005655 ORTHO05D007386 1.0e-30 137.5 191 45.5
Ah.02g115760 Amaranthus hybridus HOM05D005655 ORTHO05D007386 2.3e-30 136.3 151 49.0
SGA_v2.0_scaffold371G50147 Striga asiatica HOM05D005655 ORTHO05D007386 2.3e-30 136.3 160 47.5
Gohir.A02G061800 Gossypium hirsutum HOM05D005655 ORTHO05D007386 3.9e-30 135.6 106 64.2
COL.COLO4_13720 Corchorus olitorius HOM05D005655 ORTHO05D007386 5.1e-30 135.2 96 71.9
Aqoxy5G02015 Aquilegia oxysepala HOM05D005655 ORTHO05D007386 2.5e-29 132.9 206 39.8
AUR62022311 Chenopodium quinoa HOM05D005655 ORTHO05D007386 3.3e-29 132.5 188 44.1
ClCG08G007170 Citrullus lanatus HOM05D005655 ORTHO05D007386 3.3e-29 132.5 88 70.5
MBI05_g00396_MAGBIO Magnolia biondii HOM05D001233 ORTHO05D001233 2.8e-28 129.4 102 64.7
ATR0564G440 Amborella trichopoda HOM05D005655 ORTHO05D007386 4.8e-28 128.6 148 46.6
AUR62034929 Chenopodium quinoa HOM05D005655 ORTHO05D007386 1.8e-27 126.7 133 51.1
SHI09122 Sapria himalayana HOM05D005655 ORTHO05D007386 1.8e-27 126.7 190 41.6
VMungo0720G1747 Vigna mungo HOM05D005655 ORTHO05D007386 5.3e-27 125.2 182 44.0
Zm00001eb018490 Zea mays HOM05D005655 ORTHO05D007386 1.2e-26 124.0 194 40.2
Cpa.g.sc26.127 Carica papaya HOM05D005655 ORTHO05D007386 2.6e-26 122.9 145 51.0
Os03g0381100 Oryza sativa ssp. japonica HOM05D005655 ORTHO05D007386 1.3e-25 120.6 77 72.7
unitig_21.g20592 Utricularia gibba HOM05D005655 ORTHO05D007386 1.3e-25 120.6 77 70.1
CiPaw.15G011200 Carya illinoinensis HOM05D005655 ORTHO05D007386 9.4e-24 114.4 76 72.4
Haze_17840 Corylus avellana HOM05D005655 ORTHO05D007386 2.3e-22 109.8 216 38.4
Haze_17834 Corylus avellana HOM05D005655 ORTHO05D007386 3.9e-22 109.0 216 38.4
DCAR_013167 Daucus carota HOM05D005655 ORTHO05D007386 4.3e-21 105.5 83 62.7
Lj7C387T6 Lonicera japonica HOM05D005655 ORTHO05D007386 2.8e-20 102.8 85 61.2
Peaxi162Scf00226g00219 Petunia axillaris HOM05D005655 ORTHO05D007386 3.7e-20 102.4 132 43.9
BraA09t38776Z Brassica rapa HOM05D005655 ORTHO05D007386 1.4e-19 100.5 92 68.5
Eucgr.F00074 Eucalyptus grandis HOM05D005655 ORTHO05D007386 1.4e-19 100.5 84 58.3
Thecc.09G171000 Theobroma cacao HOM05D005655 ORTHO05D007386 2.4e-19 99.8 106 53.8
CDE09G0968 Ceratophyllum demersum HOM05D005655 ORTHO05D007386 3.1e-19 99.4 148 41.9
HPP92_016852 Vanilla planifolia HOM05D005655 ORTHO05D007386 9.1e-19 97.8 160 37.5
Mapoly0139s0011 Marchantia polymorpha HOM05D005655 ORTHO05D007386 5.9e-18 95.1 156 36.5
Psat4g128520 Pisum sativum HOM05D005655 ORTHO05D007386 2.2e-17 93.2 53 83.0
Psat6g189760 Pisum sativum HOM05D005655 ORTHO05D007386 2.9e-17 92.8 54 83.3
HPP92_027830 Vanilla planifolia HOM05D005655 ORTHO05D007386 2.5e-16 89.7 142 39.4
Pp3c9_3740 Physcomitrium patens HOM05D005655 ORTHO05D007386 3.2e-16 89.4 154 34.4
ECA247G4107 Erigeron canadensis HOM05D005655 ORTHO05D007386 2.3e-14 83.2 67 58.2
Lsat_1_v5_gn_1_5940 Lactuca sativa HOM05D005655 ORTHO05D007386 1.5e-13 80.5 52 71.2
vmacro21200 Vaccinium macrocarpon HOM05D005655 ORTHO05D007386 9.7e-13 77.8 52 71.2
Cre02.g086050 Chlamydomonas reinhardtii HOM05D005655 ORTHO05D007386 7.0e-11 71.6 77 50.6
PRCOL_00002466 Prasinoderma coloniale HOM05D005655 ORTHO05D007386 2.0e-10 70.1 90 43.3
SEGI_30885 Sequoiadendron giganteum HOM05D005655 ORTHO05D007386 5.9e-10 68.6 49 65.3
Cfa024548 Carpinus fangiana HOM05D005655 ORTHO05D007386 2.9e-09 66.2 91 41.8
MCO10G057 Micromonas commoda HOM05D005655 ORTHO05D007386 1.9e-08 63.5 80 45.0
Peaxi162Scf00226g00318 Petunia axillaris HOM05D003028 ORTHO05D003465 2.1e-07 60.1 38 68.4
SEGI_37134 Sequoiadendron giganteum HOM05D005655 ORTHO05D007386 3.0e-06 56.2 35 71.4


User provided reference genes

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