Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR021640 Cardamine hirsuta HOM05D004026 ORTHO05D004712 2.5e-47 191.8 99 100.0
AL1G34240 Arabidopsis lyrata HOM05D004026 ORTHO05D004712 1.2e-46 189.5 99 99.0
Sp1g18830 Schrenkiella parvula HOM05D004026 ORTHO05D004712 6.1e-46 187.2 97 99.0
AT1G21190 Arabidopsis thaliana HOM05D004026 ORTHO05D004712 8.0e-46 186.8 97 97.9
Aa31LG7G5300 Aethionema arabicum HOM05D004026 ORTHO05D004712 1.8e-45 185.7 97 96.9
BcaB07g32108 Brassica carinata HOM05D004026 ORTHO05D004712 1.8e-45 185.7 97 97.9
A06p17220 Brassica napus HOM05D004026 ORTHO05D004712 1.8e-45 185.7 97 97.9
BraA06t24824Z Brassica rapa HOM05D004026 ORTHO05D004712 1.8e-45 185.7 97 97.9
Carub.0001s2062 Capsella rubella HOM05D004026 ORTHO05D004712 1.8e-45 185.7 97 96.9
Aa31LG4G6900 Aethionema arabicum HOM05D004026 ORTHO05D004712 2.6e-44 181.8 96 95.8
CARHR070370 Cardamine hirsuta HOM05D004026 ORTHO05D004712 1.7e-43 179.1 99 92.9
BcaB02g07078 Brassica carinata HOM05D004026 ORTHO05D004712 2.2e-43 178.7 97 93.8
BcaC08g45508 Brassica carinata HOM05D004026 ORTHO05D004712 2.2e-43 178.7 97 93.8
A07p28330 Brassica napus HOM05D004026 ORTHO05D004712 2.2e-43 178.7 97 93.8
C06p31770 Brassica napus HOM05D004026 ORTHO05D004712 2.2e-43 178.7 97 93.8
BolC6t38306H Brassica oleracea HOM05D004026 ORTHO05D004712 2.2e-43 178.7 97 93.8
BraA07t30470Z Brassica rapa HOM05D004026 ORTHO05D004712 2.2e-43 178.7 97 93.8
AL2G36980 Arabidopsis lyrata HOM05D004026 ORTHO05D004712 3.7e-43 177.9 99 91.9
CANSAT25G0019 Cannabis sativa HOM05D004026 ORTHO05D004712 1.8e-42 175.6 96 89.6
Phvul.004G129000 Phaseolus vulgaris HOM05D004026 ORTHO05D004712 1.8e-42 175.6 96 89.6
BcaC08g47186 Brassica carinata HOM05D004026 ORTHO05D004712 2.4e-42 175.3 97 91.8
A07p42450 Brassica napus HOM05D004026 ORTHO05D004712 2.4e-42 175.3 97 91.8
C06p51010 Brassica napus HOM05D004026 ORTHO05D004712 2.4e-42 175.3 97 91.8
BolC6t40126H Brassica oleracea HOM05D004026 ORTHO05D004712 2.4e-42 175.3 97 91.8
BraA07t31770Z Brassica rapa HOM05D004026 ORTHO05D004712 2.4e-42 175.3 97 91.8
Thhalv10019321m.g Eutrema salsugineum HOM05D004026 ORTHO05D004712 2.4e-42 175.3 95 93.7
Gohir.A02G112705 Gossypium hirsutum HOM05D004026 ORTHO05D004712 2.4e-42 175.3 96 88.5
BcaC03g15707 Brassica carinata HOM05D004026 ORTHO05D004712 3.1e-42 174.9 95 93.7
A02p20950 Brassica napus HOM05D004026 ORTHO05D004712 3.1e-42 174.9 95 93.7
C02p34120 Brassica napus HOM05D004026 ORTHO05D004712 3.1e-42 174.9 95 93.7
BolC2t09428H Brassica oleracea HOM05D004026 ORTHO05D004712 3.1e-42 174.9 95 93.7
BraA02t07126Z Brassica rapa HOM05D004026 ORTHO05D004712 3.1e-42 174.9 95 93.7
AT1G76860 Arabidopsis thaliana HOM05D004026 ORTHO05D004712 4.1e-42 174.5 99 89.9
Glyma.02G082300 Glycine max HOM05D004026 ORTHO05D004712 4.1e-42 174.5 96 89.6
QL09p017237 Quercus lobata HOM05D004026 ORTHO05D004712 4.1e-42 174.5 97 87.6
THA.LOC104813712 Tarenaya hassleriana HOM05D004026 ORTHO05D004712 4.1e-42 174.5 96 89.6
Carub.0002s2374 Capsella rubella HOM05D004026 ORTHO05D004712 5.4e-42 174.1 96 90.6
Gorai.002G055500 Gossypium raimondii HOM05D004026 ORTHO05D004712 9.1e-42 173.3 96 87.5
MD05G1024000 Malus domestica HOM05D004026 ORTHO05D004712 9.1e-42 173.3 96 88.5
Phvul.004G095700 Phaseolus vulgaris HOM05D004026 ORTHO05D004712 9.1e-42 173.3 96 88.5
THA.LOC104812039 Tarenaya hassleriana HOM05D004026 ORTHO05D004712 9.1e-42 173.3 96 88.5
Glyma.16G167900 Glycine max HOM05D004026 ORTHO05D004712 1.2e-41 172.9 96 87.5
Lj2g0026454 Lotus japonicus HOM05D004026 ORTHO05D004712 1.2e-41 172.9 96 87.5
MD10G1024500 Malus domestica HOM05D004026 ORTHO05D004712 1.2e-41 172.9 96 87.5
Sp5g31990 Schrenkiella parvula HOM05D004026 ORTHO05D004712 1.2e-41 172.9 95 92.6
BcaB05g25014 Brassica carinata HOM05D004026 ORTHO05D004712 1.6e-41 172.6 95 92.6
Eucgr.F02710 Eucalyptus grandis HOM05D004026 ORTHO05D004712 1.6e-41 172.6 96 88.5
Gohir.A05G243000 Gossypium hirsutum HOM05D004026 ORTHO05D004712 1.6e-41 172.6 96 88.5
Gohir.D05G244500 Gossypium hirsutum HOM05D004026 ORTHO05D004712 1.6e-41 172.6 96 88.5
Gorai.009G253600 Gossypium raimondii HOM05D004026 ORTHO05D004712 1.6e-41 172.6 96 88.5
PGR042G0059 Punica granatum HOM05D004026 ORTHO05D004712 1.6e-41 172.6 96 88.5
CAN.G249.12 Capsicum annuum HOM05D004026 ORTHO05D004712 2.0e-41 172.2 97 85.6
ClCG08G006960 Citrullus lanatus HOM05D004026 ORTHO05D004712 2.0e-41 172.2 96 86.5
Duzib116G0179 Durio zibethinus HOM05D004026 ORTHO05D004712 2.0e-41 172.2 96 87.5
Nn5g28727 Nelumbo nucifera HOM05D004026 ORTHO05D004712 2.0e-41 172.2 96 87.5
Sed0010346 Sechium edule HOM05D004026 ORTHO05D004712 2.0e-41 172.2 96 86.5
SEGI_01220 Sequoiadendron giganteum HOM05D004026 ORTHO05D004712 2.0e-41 172.2 97 87.6
Solyc11g005370.2 Solanum lycopersicum HOM05D004026 ORTHO05D004712 2.0e-41 172.2 97 85.6
Sopen11g001380 Solanum pennellii HOM05D004026 ORTHO05D004712 2.0e-41 172.2 97 85.6
PGSC0003DMG400003988 Solanum tuberosum HOM05D004026 ORTHO05D004712 2.0e-41 172.2 97 85.6
Cpa.g.sc2145.2 Carica papaya HOM05D004026 ORTHO05D004712 2.7e-41 171.8 96 86.5
Dinv41090 Davidia involucrata HOM05D004026 ORTHO05D004712 2.7e-41 171.8 96 86.5
Nitab4.5_0000964g0020 Nicotiana tabacum HOM05D004026 ORTHO05D004712 2.7e-41 171.8 96 85.4
Hund26698 Selenicereus undatus HOM05D004026 ORTHO05D004712 2.7e-41 171.8 96 86.5
TPR.G8174 Trifolium pratense HOM05D004026 ORTHO05D004712 2.7e-41 171.8 93 90.3
Atru.chr13.2143 Acer truncatum HOM05D004026 ORTHO05D004712 3.5e-41 171.4 96 87.5
Ciclev10002950m.g Citrus clementina HOM05D004026 ORTHO05D004712 3.5e-41 171.4 96 87.5
Duzib093G0799 Durio zibethinus HOM05D004026 ORTHO05D004712 3.5e-41 171.4 96 86.5
Hma1.2p1_0105F.1_g050760 Hydrangea macrophylla HOM05D004026 ORTHO05D004712 3.5e-41 171.4 96 87.5
Nn1g06097 Nelumbo nucifera HOM05D004026 ORTHO05D004712 3.5e-41 171.4 96 87.5
TAR628G0743 Trochodendron aralioides HOM05D004026 ORTHO05D004712 3.5e-41 171.4 96 87.5
Manes.18G091400 Manihot esculenta HOM05D004026 ORTHO05D004712 4.5e-41 171.0 96 86.5
PSO541G1854 Papaver somniferum HOM05D004026 ORTHO05D004712 4.5e-41 171.0 93 90.3
PSO675G7538 Papaver somniferum HOM05D004026 ORTHO05D004712 4.5e-41 171.0 93 90.3
Peaxi162Scf00583g00530 Petunia axillaris HOM05D004026 ORTHO05D004712 4.5e-41 171.0 95 87.4
Potri.005G191600 Populus trichocarpa HOM05D004026 ORTHO05D004712 4.5e-41 171.0 96 86.5
Sabra05G0146400 Salix brachista HOM05D004026 ORTHO05D004712 4.5e-41 171.0 96 86.5
TWI34G0684 Tripterygium wilfordii HOM05D004026 ORTHO05D004712 4.5e-41 171.0 96 87.5
Lalb_Chr01g0009621 Lupinus albus HOM05D004026 ORTHO05D004712 5.9e-41 170.6 93 89.2
Medtr4g083170 Medicago truncatula HOM05D004026 ORTHO05D004712 5.9e-41 170.6 93 89.2
Psat7g153480 Pisum sativum HOM05D004026 ORTHO05D004712 5.9e-41 170.6 93 89.2
BolC5t30689H Brassica oleracea HOM05D004026 ORTHO05D004712 7.7e-41 170.2 108 86.1
Cc10_g14760 Coffea canephora HOM05D004026 ORTHO05D004712 7.7e-41 170.2 95 88.4
MELO3C008344.2 Cucumis melo HOM05D004026 ORTHO05D004712 7.7e-41 170.2 96 86.5
Migut.C01015 Erythranthe guttata HOM05D004026 ORTHO05D004712 7.7e-41 170.2 96 87.5
Gohir.D03G060607 Gossypium hirsutum HOM05D004026 ORTHO05D004712 7.7e-41 170.2 96 86.5
Prupe.8G028400 Prunus persica HOM05D004026 ORTHO05D004712 7.7e-41 170.2 96 86.5
Sabra02G0054100 Salix brachista HOM05D004026 ORTHO05D004712 7.7e-41 170.2 96 86.5
Sed0019016 Sechium edule HOM05D004026 ORTHO05D004712 7.7e-41 170.2 96 85.4
TAR381G0202 Trochodendron aralioides HOM05D004026 ORTHO05D004712 7.7e-41 170.2 96 86.5
Zm00001eb146730 Zea mays HOM05D004026 ORTHO05D004712 7.7e-41 170.2 95 87.4
Ah.05g167900 Amaranthus hybridus HOM05D004026 ORTHO05D004712 1.0e-40 169.9 95 86.3
arahy.Tifrunner.gnm1.ann1.9PQ1GY Arachis hypogaea HOM05D004026 ORTHO05D004712 1.0e-40 169.9 95 86.3
arahy.Tifrunner.gnm1.ann1.XJQY2Y Arachis hypogaea HOM05D004026 ORTHO05D004712 1.0e-40 169.9 95 86.3
EL10Ac1g01537 Beta vulgaris HOM05D004026 ORTHO05D004712 1.0e-40 169.9 95 86.3
CSS0019157 Camellia sinensis var. sinensis HOM05D004026 ORTHO05D004712 1.0e-40 169.9 96 86.5
Migut.N03226 Erythranthe guttata HOM05D004026 ORTHO05D004712 1.0e-40 169.9 96 86.5
Lj1g0021939 Lotus japonicus HOM05D004026 ORTHO05D004712 1.0e-40 169.9 94 87.2
QL02p024017 Quercus lobata HOM05D004026 ORTHO05D004712 1.0e-40 169.9 96 85.4
Thecc.08G150600 Theobroma cacao HOM05D004026 ORTHO05D004712 1.0e-40 169.9 96 85.4
ECA236G1806 Erigeron canadensis HOM05D004026 ORTHO05D004712 1.3e-40 169.5 96 85.4
FvH4_2g13861 Fragaria vesca HOM05D004026 ORTHO05D004712 1.3e-40 169.5 96 85.4
FAN15G1801 Fragaria x ananassa HOM05D004026 ORTHO05D004712 1.3e-40 169.5 96 85.4
FAN20G2578 Fragaria x ananassa HOM05D004026 ORTHO05D004712 1.3e-40 169.5 96 85.4
FAN27G2615 Fragaria x ananassa HOM05D004026 ORTHO05D004712 1.3e-40 169.5 96 85.4
HanXRQChr06g0182631 Helianthus annuus HOM05D004026 ORTHO05D004712 1.3e-40 169.5 96 85.4
HanXRQChr11g0339331 Helianthus annuus HOM05D004026 ORTHO05D004712 1.3e-40 169.5 96 85.4
Lsat_1_v5_gn_7_71840 Lactuca sativa HOM05D004026 ORTHO05D004712 1.3e-40 169.5 96 85.4
MBI09_g18621_MAGBIO Magnolia biondii HOM05D004026 ORTHO05D004712 1.3e-40 169.5 93 88.2
RcHm_v2.0_Chr6g0275571 Rosa chinensis HOM05D004026 ORTHO05D004712 1.3e-40 169.5 96 85.4
HPP92_016150 Vanilla planifolia HOM05D004026 ORTHO05D004712 1.3e-40 169.5 96 85.4
Dinv09936 Davidia involucrata HOM05D004026 ORTHO05D004712 1.7e-40 169.1 96 84.4
FAN24G0951 Fragaria x ananassa HOM05D004026 ORTHO05D004712 1.7e-40 169.1 96 84.4
Lalb_Chr03g0035271 Lupinus albus HOM05D004026 ORTHO05D004712 1.7e-40 169.1 93 88.2
Potri.002G068800 Populus trichocarpa HOM05D004026 ORTHO05D004712 1.7e-40 169.1 96 85.4
Rhsim06G0071000 Rhododendron simsii HOM05D004026 ORTHO05D004712 1.7e-40 169.1 96 85.4
Rhsim06G0135800 Rhododendron simsii HOM05D004026 ORTHO05D004712 1.7e-40 169.1 96 85.4
TPR.G14063 Trifolium pratense HOM05D004026 ORTHO05D004712 1.7e-40 169.1 93 88.2
TAR625G0830 Trochodendron aralioides HOM05D004026 ORTHO05D004712 1.7e-40 169.1 96 85.4
Peaxi162Scf00025g02218 Petunia axillaris HOM05D004026 ORTHO05D004712 2.3e-40 168.7 95 86.3
unitig_744.g24567 Utricularia gibba HOM05D004026 ORTHO05D004712 2.3e-40 168.7 96 86.5
Actinidia06668 Actinidia chinensis HOM05D004026 ORTHO05D004712 2.9e-40 168.3 96 84.4
Manes.02G178900 Manihot esculenta HOM05D004026 ORTHO05D004712 3.8e-40 167.9 96 84.4
Mapoly0008s0084 Marchantia polymorpha HOM05D004026 ORTHO05D004712 3.8e-40 167.9 97 84.5
CDE06G1840 Ceratophyllum demersum HOM05D004026 ORTHO05D004712 5.0e-40 167.5 96 84.4
CDE08G0955 Ceratophyllum demersum HOM05D004026 ORTHO05D004712 5.0e-40 167.5 96 84.4
SalBow6G5104 Salvia bowleyana HOM05D004026 ORTHO05D004712 5.0e-40 167.5 96 84.4
AagrBONN_evm.TU.Sc2ySwM_117.2023 Anthoceros agrestis HOM05D004026 ORTHO05D004712 6.5e-40 167.2 96 83.3
Dinv25856 Davidia involucrata HOM05D004026 ORTHO05D004712 6.5e-40 167.2 96 83.3
Oeu046026.1 Olea europaea HOM05D004026 ORTHO05D004712 6.5e-40 167.2 96 84.4
unitig_21.g20177 Utricularia gibba HOM05D004026 ORTHO05D004712 6.5e-40 167.2 96 85.4
Aqoxy5G02098 Aquilegia oxysepala HOM05D004026 ORTHO05D004712 8.6e-40 166.8 96 86.5
Pp3c24_12260 Physcomitrium patens HOM05D004026 ORTHO05D004712 8.6e-40 166.8 97 83.5
Os01g0866700 Oryza sativa ssp. japonica HOM05D004026 ORTHO05D004712 1.5e-39 166.0 91 87.9
SMO169G0100 Selaginella moellendorffii HOM05D004026 ORTHO05D004712 1.5e-39 166.0 96 83.3
Hma1.2p1_0006F.1_g004910 Hydrangea macrophylla HOM05D004026 ORTHO05D004712 1.9e-39 165.6 96 82.3
BcaC05g26025 Brassica carinata HOM05D004026 ORTHO05D004712 2.5e-39 165.2 108 84.3
ATR0772G183 Amborella trichopoda HOM05D004026 ORTHO05D004712 3.2e-39 164.9 93 87.1
DCAR_014432 Daucus carota HOM05D004026 ORTHO05D004712 9.5e-39 163.3 91 86.8
Haze_17748 Corylus avellana HOM05D004026 ORTHO05D004712 2.8e-38 161.8 113 74.3
MCO12G407 Micromonas commoda HOM05D004026 ORTHO05D004712 1.4e-37 159.5 93 82.8
Cre16.g662300 Chlamydomonas reinhardtii HOM05D004026 ORTHO05D004712 4.0e-37 157.9 92 80.4
COL.COLO4_37834 Corchorus olitorius HOM05D004026 ORTHO05D004712 4.5e-33 144.4 96 77.1
Cfa018326 Carpinus fangiana HOM05D004026 ORTHO05D004712 4.3e-31 137.9 133 58.6
CsaV3_1G019700 Cucumis sativus L. HOM05D004026 ORTHO05D004712 7.3e-31 137.1 124 61.3
PRCOL_00001118 Prasinoderma coloniale HOM05D004026 ORTHO05D004712 3.6e-30 134.8 90 67.8
AUR62026713 Chenopodium quinoa HOM05D004026 ORTHO05D004712 3.0e-29 131.7 95 71.6
GSVIVG01034520001 Vitis vinifera HOM05D004026 ORTHO05D004712 2.0e-28 129.0 77 80.5
CiPaw.16G013200 Carya illinoinensis HOM05D004026 ORTHO05D004712 1.3e-27 126.3 71 85.9
Rhsim10G0141800 Rhododendron simsii HOM05D004026 ORTHO05D004712 1.7e-27 125.9 71 85.9
Nitab4.5_0000004g0160 Nicotiana tabacum HOM05D004026 ORTHO05D004712 2.9e-27 125.2 71 84.5
TWI60G1706 Tripterygium wilfordii HOM05D004026 ORTHO05D004712 3.7e-27 124.8 71 84.5
Haze_27742 Corylus avellana HOM05D004026 ORTHO05D004712 4.9e-27 124.4 90 65.6
Ca_28109_v3 Cicer arietinum L. HOM05D004026 ORTHO05D004712 1.1e-26 123.2 68 86.8
CsaV3_6G005290 Cucumis sativus L. HOM05D004026 ORTHO05D004712 1.1e-26 123.2 121 59.5
MD10G1024600 Malus domestica HOM05D004026 ORTHO05D004712 1.1e-26 123.2 71 83.1
Prupe.3G148200 Prunus persica HOM05D004026 ORTHO05D004712 1.1e-26 123.2 71 83.1
C05p19920 Brassica napus HOM05D004026 ORTHO05D004712 2.4e-26 122.1 82 82.9
AUR62013577 Chenopodium quinoa HOM05D004026 ORTHO05D004712 2.4e-26 122.1 70 84.3
SalBow4G0880 Salvia bowleyana HOM05D004026 ORTHO05D004712 3.0e-24 115.2 94 62.8
Sc02g0004120 Simmondsia chinensis HOM05D004026 ORTHO05D004712 3.3e-23 111.7 59 89.8
Nitab4.5_0002064g0050 Nicotiana tabacum HOM05D004026 ORTHO05D004712 9.5e-23 110.2 58 87.9
Nitab4.5_0010284g0010 Nicotiana tabacum HOM05D004026 ORTHO05D004712 9.5e-23 110.2 57 91.2
SHI20484 Sapria himalayana HOM05D004026 ORTHO05D004712 2.8e-22 108.6 57 91.2
MSTRG.22373 Avicennia marina HOM05D004026 ORTHO05D004712 1.8e-21 105.9 68 72.1
Glyma.10G120000 Glycine max HOM05D004026 ORTHO05D004712 3.7e-19 98.2 61 75.4
Cfa023910 Carpinus fangiana HOM05D004026 ORTHO05D004712 4.9e-19 97.8 88 52.3
vmacro12827 Vaccinium macrocarpon HOM05D004026 ORTHO05D004712 1.1e-18 96.7 137 45.3
CiPaw.15G016800 Carya illinoinensis HOM05D004026 ORTHO05D004712 5.4e-18 94.4 51 88.2
Oeu011940.1 Olea europaea HOM05D004026 ORTHO05D004712 5.4e-18 94.4 50 90.0
RcHm_v2.0_Chr6g0275581 Rosa chinensis HOM05D004026 ORTHO05D004712 1.2e-17 93.2 50 90.0
CBR_g88561 Chara braunii HOM05D000019 ORTHO05D000002 3.2e-10 68.6 60 58.3


User provided reference genes

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