Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR004500 Cardamine hirsuta HOM05D006124 ORTHO05D007854 2.2e-249 865.1 423 100.0
AT1G05055 Arabidopsis thaliana HOM05D006124 ORTHO05D007854 2.2e-238 828.6 423 95.7
AL1G14800 Arabidopsis lyrata HOM05D006124 ORTHO05D007854 2.9e-238 828.2 423 96.0
Carub.0001s0430 Capsella rubella HOM05D006124 ORTHO05D007854 7.9e-236 820.1 423 94.3
Thhalv10007730m.g Eutrema salsugineum HOM05D006124 ORTHO05D007854 6.7e-235 817.0 423 93.6
A08p36590 Brassica napus HOM05D006124 ORTHO05D007854 6.3e-233 810.4 423 92.4
BraA08t35561Z Brassica rapa HOM05D006124 ORTHO05D007854 6.3e-233 810.4 423 92.4
BcaB03g13459 Brassica carinata HOM05D006124 ORTHO05D007854 4.1e-232 807.7 423 92.2
C08p01730 Brassica napus HOM05D006124 ORTHO05D007854 7.0e-232 807.0 423 92.0
BolC8t46973H Brassica oleracea HOM05D006124 ORTHO05D007854 7.0e-232 807.0 423 92.0
Sp1g03920 Schrenkiella parvula HOM05D006124 ORTHO05D007854 2.6e-231 805.1 425 92.9
Aa31LG1G19730 Aethionema arabicum HOM05D006124 ORTHO05D007854 7.5e-218 760.4 423 87.9
THA.LOC104801004 Tarenaya hassleriana HOM05D006124 ORTHO05D007854 6.5e-214 747.3 424 85.4
Cpa.g.sc139.77 Carica papaya HOM05D006124 ORTHO05D007854 1.3e-198 696.4 423 79.4
QL01p023235 Quercus lobata HOM05D006124 ORTHO05D007854 4.6e-191 671.4 418 76.6
Hma1.2p1_0002F.1_g001970 Hydrangea macrophylla HOM05D006124 ORTHO05D007854 2.3e-190 669.1 425 75.8
Duzib150G0641 Durio zibethinus HOM05D006124 ORTHO05D007854 1.1e-189 666.8 397 79.8
Cfa012640 Carpinus fangiana HOM05D006124 ORTHO05D007854 1.9e-189 666.0 423 75.9
Haze_08019 Corylus avellana HOM05D006124 ORTHO05D007854 5.6e-189 664.5 430 75.3
FAN21G3497 Fragaria x ananassa HOM05D006124 ORTHO05D007854 5.6e-189 664.5 415 76.9
RcHm_v2.0_Chr5g0060301 Rosa chinensis HOM05D006124 ORTHO05D007854 7.3e-189 664.1 415 77.1
TWI39G0794 Tripterygium wilfordii HOM05D006124 ORTHO05D007854 2.8e-188 662.1 412 77.9
Actinidia07118 Actinidia chinensis HOM05D006124 ORTHO05D007854 4.7e-188 661.4 399 77.9
CSS0017090 Camellia sinensis var. sinensis HOM05D006124 ORTHO05D007854 6.2e-188 661.0 424 75.5
Ciclev10005033m.g Citrus clementina HOM05D006124 ORTHO05D007854 8.1e-188 660.6 418 76.8
FAN25G1144 Fragaria x ananassa HOM05D006124 ORTHO05D007854 1.1e-187 660.2 415 76.6
Atru.chr3.3681 Acer truncatum HOM05D006124 ORTHO05D007854 3.1e-187 658.7 418 76.8
Gohir.D09G102900 Gossypium hirsutum HOM05D006124 ORTHO05D007854 4.0e-187 658.3 407 76.9
MD03G1112800 Malus domestica HOM05D006124 ORTHO05D007854 8.9e-187 657.1 422 75.1
GSVIVG01025154001 Vitis vinifera HOM05D006124 ORTHO05D007854 8.9e-187 657.1 421 75.3
FvH4_3g32970 Fragaria vesca HOM05D006124 ORTHO05D007854 1.2e-186 656.8 415 75.9
HanXRQChr02g0055911 Helianthus annuus HOM05D006124 ORTHO05D007854 1.2e-186 656.8 420 75.7
COL.COLO4_05187 Corchorus olitorius HOM05D006124 ORTHO05D007854 2.0e-186 656.0 393 79.6
MELO3C005421.2 Cucumis melo HOM05D006124 ORTHO05D007854 2.6e-186 655.6 422 74.4
FAN11G0357 Fragaria x ananassa HOM05D006124 ORTHO05D007854 2.6e-186 655.6 415 75.7
Thecc.09G259100 Theobroma cacao HOM05D006124 ORTHO05D007854 4.4e-186 654.8 400 78.0
Dinv30520 Davidia involucrata HOM05D006124 ORTHO05D007854 9.9e-186 653.7 429 74.8
Manes.04G024500 Manihot esculenta HOM05D006124 ORTHO05D007854 1.7e-185 652.9 409 77.5
vmacro03179 Vaccinium macrocarpon HOM05D006124 ORTHO05D007854 1.7e-185 652.9 415 75.7
Eucgr.J00945 Eucalyptus grandis HOM05D006124 ORTHO05D007854 2.9e-185 652.1 424 75.9
CANSAT54G1697 Cannabis sativa HOM05D006124 ORTHO05D007854 3.7e-185 651.7 424 75.0
Rhsim08G0043400 Rhododendron simsii HOM05D006124 ORTHO05D007854 3.7e-185 651.7 415 76.1
CsaV3_5G005370 Cucumis sativus L. HOM05D006124 ORTHO05D007854 6.4e-185 651.0 416 75.0
Glyma.19G129000 Glycine max HOM05D006124 ORTHO05D007854 8.3e-185 650.6 419 74.9
Lsat_1_v5_gn_6_46340 Lactuca sativa HOM05D006124 ORTHO05D007854 1.4e-184 649.8 413 75.3
Gohir.A09G106200 Gossypium hirsutum HOM05D006124 ORTHO05D007854 3.2e-184 648.7 407 76.2
Gorai.006G120700 Gossypium raimondii HOM05D006124 ORTHO05D007854 3.2e-184 648.7 407 76.2
ClCG01G004970 Citrullus lanatus HOM05D006124 ORTHO05D007854 4.1e-184 648.3 417 75.8
EL10Ac5g12347 Beta vulgaris HOM05D006124 ORTHO05D007854 9.2e-184 647.1 390 77.4
Ca_08379_v3 Cicer arietinum L. HOM05D006124 ORTHO05D007854 9.2e-184 647.1 414 75.1
Glyma.11G073900 Glycine max HOM05D006124 ORTHO05D007854 9.2e-184 647.1 418 73.7
Nitab4.5_0000214g0090 Nicotiana tabacum HOM05D006124 ORTHO05D007854 1.6e-183 646.4 423 74.7
Ciclev10011800m.g Citrus clementina HOM05D006124 ORTHO05D007854 3.5e-183 645.2 419 74.9
TPR.G16093 Trifolium pratense HOM05D006124 ORTHO05D007854 4.6e-183 644.8 412 75.0
Medtr7g089440 Medicago truncatula HOM05D006124 ORTHO05D007854 7.8e-183 644.0 421 73.6
Lalb_Chr22g0357551 Lupinus albus HOM05D006124 ORTHO05D007854 1.3e-182 643.3 413 73.8
Lj1g0025688 Lotus japonicus HOM05D006124 ORTHO05D007854 1.7e-182 642.9 412 75.0
Potri.004G113700 Populus trichocarpa HOM05D006124 ORTHO05D007854 5.1e-182 641.3 394 78.4
Prupe.6G097100 Prunus persica HOM05D006124 ORTHO05D007854 5.1e-182 641.3 416 75.2
Sed0018571 Sechium edule HOM05D006124 ORTHO05D007854 5.1e-182 641.3 421 74.1
Cc01_g01430 Coffea canephora HOM05D006124 ORTHO05D007854 1.1e-181 640.2 426 74.2
Aqoxy5G00340 Aquilegia oxysepala HOM05D006124 ORTHO05D007854 2.5e-181 639.0 412 75.0
Lalb_Chr14g0365721 Lupinus albus HOM05D006124 ORTHO05D007854 4.3e-181 638.3 414 73.2
PSO541G0641 Papaver somniferum HOM05D006124 ORTHO05D007854 5.6e-181 637.9 422 72.7
Sabra04G0071700 Salix brachista HOM05D006124 ORTHO05D007854 7.3e-181 637.5 407 76.2
PSO384G4530 Papaver somniferum HOM05D006124 ORTHO05D007854 9.5e-181 637.1 405 74.6
Solyc04g054700.3 Solanum lycopersicum HOM05D006124 ORTHO05D007854 2.1e-180 636.0 423 73.0
ECA233G1948 Erigeron canadensis HOM05D006124 ORTHO05D007854 2.8e-180 635.6 386 77.7
VMungo1383G3228 Vigna mungo HOM05D006124 ORTHO05D007854 2.8e-180 635.6 419 73.3
Migut.D02195 Erythranthe guttata HOM05D006124 ORTHO05D007854 4.7e-180 634.8 420 71.9
arahy.Tifrunner.gnm1.ann1.63AZS3 Arachis hypogaea HOM05D006124 ORTHO05D007854 6.2e-180 634.4 420 73.6
PSO339G3674 Papaver somniferum HOM05D006124 ORTHO05D007854 6.2e-180 634.4 405 74.3
Peaxi162Scf00876g00022 Petunia axillaris HOM05D006124 ORTHO05D007854 1.4e-179 633.3 423 73.5
arahy.Tifrunner.gnm1.ann1.M1WJK6 Arachis hypogaea HOM05D006124 ORTHO05D007854 1.8e-179 632.9 420 73.6
MBI18_g17017_MAGBIO Magnolia biondii HOM05D006124 ORTHO05D007854 8.9e-179 630.6 396 74.5
CAN.G219.5 Capsicum annuum HOM05D006124 ORTHO05D007854 1.5e-178 629.8 423 72.6
MSTRG.21138 Avicennia marina HOM05D006124 ORTHO05D007854 2.6e-178 629.0 416 72.4
Nn7g36111 Nelumbo nucifera HOM05D006124 ORTHO05D007854 3.4e-178 628.6 416 73.6
Peaxi162Scf00272g00827 Petunia axillaris HOM05D006124 ORTHO05D007854 4.4e-178 628.2 423 73.0
Nitab4.5_0004386g0010 Nicotiana tabacum HOM05D006124 ORTHO05D007854 6.4e-177 624.4 421 73.4
SGA_v2.0_scaffold61G21160 Striga asiatica HOM05D006124 ORTHO05D007854 2.7e-175 619.0 419 70.6
CiPaw.05G171100 Carya illinoinensis HOM05D006124 ORTHO05D007854 7.8e-175 617.5 397 74.1
Os04g0508900 Oryza sativa ssp. japonica HOM05D006124 ORTHO05D007854 4.2e-168 595.1 387 73.4
unitig_21.g20322 Utricularia gibba HOM05D006124 ORTHO05D007854 7.1e-168 594.3 430 67.2
Zm00001eb077790 Zea mays HOM05D006124 ORTHO05D007854 7.1e-168 594.3 385 73.8
DCAR_015555 Daucus carota HOM05D006124 ORTHO05D007854 5.3e-163 578.2 372 75.8
AUR62018404 Chenopodium quinoa HOM05D006124 ORTHO05D007854 9.0e-163 577.4 357 76.8
AUR62021039 Chenopodium quinoa HOM05D006124 ORTHO05D007854 9.0e-163 577.4 348 77.9
PGR119G0371 Punica granatum HOM05D006124 ORTHO05D007854 2.9e-161 572.4 369 75.6
CiPaw.13G108300 Carya illinoinensis HOM05D006124 ORTHO05D007854 3.8e-161 572.0 371 75.2
SEGI_32950 Sequoiadendron giganteum HOM05D006124 ORTHO05D007854 4.2e-160 568.5 409 66.5
SalBow3G1513 Salvia bowleyana HOM05D006124 ORTHO05D007854 1.5e-157 560.1 376 72.9
Oeu035057.1 Olea europaea HOM05D006124 ORTHO05D007854 1.6e-156 556.6 375 72.0
Ah.13g077240 Amaranthus hybridus HOM05D006124 ORTHO05D007854 7.1e-152 541.2 324 77.2
Sc06g0010480 Simmondsia chinensis HOM05D006124 ORTHO05D007854 4.3e-149 531.9 321 76.6
Sopen04g024450 Solanum pennellii HOM05D006124 ORTHO05D007854 1.4e-147 526.9 326 76.1
Mapoly0005s0033 Marchantia polymorpha HOM05D006124 ORTHO05D007854 2.4e-147 526.2 410 62.0
Pp3c24_6530 Physcomitrium patens HOM05D006124 ORTHO05D007854 2.4e-147 526.2 405 60.7
CDE04G2680 Ceratophyllum demersum HOM05D006124 ORTHO05D007854 1.0e-145 520.8 330 74.5
TAR369G0666 Trochodendron aralioides HOM05D006124 ORTHO05D007854 1.3e-145 520.4 336 73.5
CBR_g21234 Chara braunii HOM05D006124 ORTHO05D007854 3.8e-145 518.8 404 60.9
SMO141G0040 Selaginella moellendorffii HOM05D006124 ORTHO05D007854 3.9e-142 508.8 396 59.6
MD11G1132000 Malus domestica HOM05D006124 ORTHO05D007854 8.7e-142 507.7 327 73.4
Phvul.001G121400 Phaseolus vulgaris HOM05D006124 ORTHO05D007854 2.8e-140 502.7 314 74.8
Peaxi162Scf00106g02220 Petunia axillaris HOM05D006124 ORTHO05D007854 5.3e-139 498.4 414 63.5
ATR0580G285 Amborella trichopoda HOM05D006124 ORTHO05D007854 2.3e-134 483.0 315 70.8
Lj1C682G4 Lonicera japonica HOM05D006124 ORTHO05D007854 2.2e-132 476.5 284 80.6
Peaxi162Scf00876g00023 Petunia axillaris HOM05D006124 ORTHO05D007854 1.5e-122 443.7 296 73.3
Psat3g079640 Pisum sativum HOM05D006124 ORTHO05D007854 9.4e-120 434.5 267 76.4
BolC5t29103H Brassica oleracea HOM05D006124 ORTHO05D007854 2.6e-117 426.4 318 68.6
Cre03.g179550 Chlamydomonas reinhardtii HOM05D006124 ORTHO05D007854 1.4e-102 377.5 429 45.9
AagrBONN_evm.TU.Sc2ySwM_344.4431 Anthoceros agrestis HOM05D006124 ORTHO05D007854 6.8e-102 375.2 270 61.9
MCO11G183 Micromonas commoda HOM05D006124 ORTHO05D007854 1.6e-95 354.0 426 45.1
CAN.G1136.1 Capsicum annuum HOM05D006124 ORTHO05D007854 2.3e-94 350.1 252 67.9
PGSC0003DMG401027913 Solanum tuberosum HOM05D006124 ORTHO05D007854 6.8e-94 348.6 248 71.4
Haze_26481 Corylus avellana HOM05D006124 ORTHO05D007854 3.0e-81 306.6 396 41.7
Solyc08g028693.1 Solanum lycopersicum HOM05D006124 ORTHO05D007854 3.0e-81 306.6 200 73.5
Cfa026643 Carpinus fangiana HOM05D006124 ORTHO05D007854 1.9e-67 260.8 434 34.6
PRCOL_00001395 Prasinoderma coloniale HOM05D006124 ORTHO05D007854 4.1e-67 259.6 357 39.5
Lj1A187G25 Lonicera japonica HOM05D006124 ORTHO05D007854 1.3e-57 228.0 326 41.7
BcaC09g51580 Brassica carinata HOM05D006124 ORTHO05D007854 1.8e-38 164.5 93 90.3
HPP92_015146 Vanilla planifolia HOM05D006124 ORTHO05D007854 2.9e-28 130.6 91 62.6
Psat6g235520 Pisum sativum HOM05D006124 ORTHO05D001516 1.8e-22 111.3 74 68.9
Peaxi162Scf00876g00016 Petunia axillaris HOM05D006124 ORTHO05D007854 8.5e-20 102.4 93 62.4
Lj1A682T15 Lonicera japonica HOM05D006124 ORTHO05D007854 1.5e-16 91.7 54 70.4
ECA247G2464 Erigeron canadensis HOM05D011992 ORTHO05D008321 6.3e-15 86.3 108 47.2
ClCG03G002310 Citrullus lanatus HOM05D006124 ORTHO05D150439 5.0e-12 76.6 138 35.5
RcHm_v2.0_Chr5g0060231 Rosa chinensis HOM05D006124 ORTHO05D007854 1.6e-10 71.6 61 54.1
HPP92_015147 Vanilla planifolia HOM05D006124 ORTHO05D007854 1.4e-09 68.6 54 66.7
ECA233G1860 Erigeron canadensis HOM05D000013 ORTHO05D000011 9.7e-08 62.4 105 39.0


User provided reference genes

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