Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT64G2951 Cannabis sativa HOM05D006900 ORTHO05D008651 4.1e-204 715.3 631 100.0
Prupe.1G117800 Prunus persica HOM05D006900 ORTHO05D008651 4.0e-106 389.8 647 74.8
MD13G1154800 Malus domestica HOM05D006900 ORTHO05D008651 7.2e-100 369.0 644 74.2
Haze_01304 Corylus avellana HOM05D006900 ORTHO05D008651 3.5e-94 350.1 636 73.4
RcHm_v2.0_Chr4g0425111 Rosa chinensis HOM05D006900 ORTHO05D008651 7.7e-94 349.0 622 74.6
Cfa015319 Carpinus fangiana HOM05D006900 ORTHO05D008651 6.6e-93 345.9 631 73.2
Thecc.04G300100 Theobroma cacao HOM05D006900 ORTHO05D008651 8.6e-93 345.5 630 73.5
FvH4_4g19660 Fragaria vesca HOM05D006900 ORTHO05D008651 1.2e-91 341.7 628 72.8
Duzib212G0988 Durio zibethinus HOM05D006900 ORTHO05D008651 2.1e-91 340.9 648 70.7
FAN07G1219 Fragaria x ananassa HOM05D006900 ORTHO05D008651 4.0e-90 336.7 628 72.5
FAN12G3178 Fragaria x ananassa HOM05D006900 ORTHO05D008651 5.2e-90 336.3 628 72.0
Manes.03G204600 Manihot esculenta HOM05D006900 ORTHO05D008651 5.7e-89 332.8 622 74.6
CSS0034541 Camellia sinensis var. sinensis HOM05D006900 ORTHO05D008651 2.8e-88 330.5 636 71.7
PGR004G2297 Punica granatum HOM05D006900 ORTHO05D008651 4.9e-88 329.7 560 78.2
TAR362G0296 Trochodendron aralioides HOM05D006900 ORTHO05D008651 1.8e-87 327.8 636 72.0
arahy.Tifrunner.gnm1.ann1.Z0RY6M Arachis hypogaea HOM05D006900 ORTHO05D008651 3.2e-87 327.0 638 73.2
Sabra10G0112000 Salix brachista HOM05D006900 ORTHO05D008651 4.1e-87 326.6 644 71.6
Potri.010G145000 Populus trichocarpa HOM05D006900 ORTHO05D008651 1.2e-86 325.1 653 70.6
arahy.Tifrunner.gnm1.ann1.88EKIY Arachis hypogaea HOM05D006900 ORTHO05D008651 2.7e-86 323.9 560 78.9
CsaV3_3G015170 Cucumis sativus L. HOM05D006900 ORTHO05D008651 3.5e-86 323.6 620 71.1
Hma1.2p1_0013F.1_g008570 Hydrangea macrophylla HOM05D006900 ORTHO05D008651 7.8e-86 322.4 629 71.4
Lj4g0008712 Lotus japonicus HOM05D006900 ORTHO05D008651 1.0e-85 322.0 623 72.9
QL06p012004 Quercus lobata HOM05D006900 ORTHO05D008651 1.0e-85 322.0 647 70.3
GSVIVG01034997001 Vitis vinifera HOM05D006900 ORTHO05D008651 1.3e-85 321.6 632 71.2
Dinv15174 Davidia involucrata HOM05D006900 ORTHO05D008651 1.7e-85 321.2 535 80.6
Actinidia13360 Actinidia chinensis HOM05D006900 ORTHO05D008651 5.0e-85 319.7 556 79.7
Gohir.A10G171600 Gossypium hirsutum HOM05D006900 ORTHO05D008651 6.6e-85 319.3 640 69.8
Gohir.D10G178700 Gossypium hirsutum HOM05D006900 ORTHO05D008651 1.1e-84 318.5 642 69.6
CiPaw.02G075100 Carya illinoinensis HOM05D006900 ORTHO05D008651 1.5e-84 318.2 601 73.4
COL.COLO4_34620 Corchorus olitorius HOM05D006900 ORTHO05D008651 1.5e-84 318.2 603 73.3
Gorai.011G199800 Gossypium raimondii HOM05D006900 ORTHO05D008651 1.5e-84 318.2 642 69.6
Atru.chr4.3007 Acer truncatum HOM05D006900 ORTHO05D008651 7.3e-84 315.8 628 71.2
TWI09G0824 Tripterygium wilfordii HOM05D006900 ORTHO05D008651 7.3e-84 315.8 622 72.3
MELO3C006715.2 Cucumis melo HOM05D006900 ORTHO05D008651 9.5e-84 315.5 620 70.5
Solyc04g009020.4 Solanum lycopersicum HOM05D006900 ORTHO05D008651 1.6e-83 314.7 676 68.0
ClCG05G006560 Citrullus lanatus HOM05D006900 ORTHO05D008651 2.8e-83 313.9 634 70.0
Lalb_Chr07g0182071 Lupinus albus HOM05D006900 ORTHO05D008651 2.8e-83 313.9 630 72.1
Medtr4g122060 Medicago truncatula HOM05D006900 ORTHO05D008651 6.1e-83 312.8 616 71.9
Lj6A690T75 Lonicera japonica HOM05D006900 ORTHO05D008651 1.0e-82 312.0 635 70.9
Glyma.17G033400 Glycine max HOM05D006900 ORTHO05D008651 3.1e-82 310.5 645 69.5
Sopen04g004200 Solanum pennellii HOM05D006900 ORTHO05D008651 4.0e-82 310.1 675 67.9
PGSC0003DMG400011531 Solanum tuberosum HOM05D006900 ORTHO05D008651 6.8e-82 309.3 676 67.6
Eucgr.H04042 Eucalyptus grandis HOM05D006900 ORTHO05D008651 8.9e-82 308.9 564 67.2
CAN.G274.12 Capsicum annuum HOM05D006900 ORTHO05D008651 1.2e-81 308.5 675 68.0
Nitab4.5_0004979g0030 Nicotiana tabacum HOM05D006900 ORTHO05D008651 7.5e-81 305.8 655 68.7
VMungo1215G0487 Vigna mungo HOM05D006900 ORTHO05D008651 1.7e-80 304.7 645 68.7
Glyma.07G240000 Glycine max HOM05D006900 ORTHO05D008651 3.7e-80 303.5 643 69.1
Ciclev10004521m.g Citrus clementina HOM05D006900 ORTHO05D008651 4.9e-80 303.1 616 72.1
Carub.0003s1679 Capsella rubella HOM05D006900 ORTHO05D008651 6.4e-80 302.8 646 68.7
Lsat_1_v5_gn_6_18120 Lactuca sativa HOM05D006900 ORTHO05D008651 6.4e-80 302.8 642 68.7
Peaxi162Scf00681g00223 Petunia axillaris HOM05D006900 ORTHO05D008651 1.4e-79 301.6 643 68.9
SGA_v2.0_scaffold104G30080 Striga asiatica HOM05D006900 ORTHO05D008651 1.4e-79 301.6 587 72.2
Nn3g21725 Nelumbo nucifera HOM05D006900 ORTHO05D008651 5.4e-79 299.7 649 69.6
Migut.G00056 Erythranthe guttata HOM05D006900 ORTHO05D008651 2.7e-78 297.4 636 70.6
Nitab4.5_0010299g0060 Nicotiana tabacum HOM05D006900 ORTHO05D008651 2.7e-78 297.4 686 52.5
THA.LOC104820304 Tarenaya hassleriana HOM05D006900 ORTHO05D008651 2.7e-78 297.4 614 71.0
AL3G30020 Arabidopsis lyrata HOM05D006900 ORTHO05D008651 2.3e-77 294.3 649 68.4
Sp3g15260 Schrenkiella parvula HOM05D006900 ORTHO05D008651 3.0e-77 293.9 653 68.0
Aa31LG8G4070 Aethionema arabicum HOM05D006900 ORTHO05D008651 3.9e-77 293.5 649 67.0
Thhalv10020271m.g Eutrema salsugineum HOM05D006900 ORTHO05D008651 3.9e-77 293.5 638 69.1
HanXRQChr13g0393421 Helianthus annuus HOM05D006900 ORTHO05D008651 5.0e-77 293.1 629 69.6
MSTRG.10150 Avicennia marina HOM05D006900 ORTHO05D008651 1.1e-76 292.0 552 75.9
AUR62016204 Chenopodium quinoa HOM05D006900 ORTHO05D008651 1.1e-76 292.0 517 79.3
CARHR092290 Cardamine hirsuta HOM05D006900 ORTHO05D008651 1.5e-76 291.6 642 69.3
ECA233G1261 Erigeron canadensis HOM05D006900 ORTHO05D008651 2.5e-76 290.8 624 70.4
MBI18_g32026_MAGBIO Magnolia biondii HOM05D006900 ORTHO05D008651 4.3e-76 290.0 514 80.2
Ah.04g156910 Amaranthus hybridus HOM05D006900 ORTHO05D008651 7.3e-76 289.3 633 68.4
BraA05t22092Z Brassica rapa HOM05D006900 ORTHO05D008651 1.6e-75 288.1 644 68.3
AUR62039284 Chenopodium quinoa HOM05D006900 ORTHO05D008651 1.6e-75 288.1 517 78.9
A05p32690 Brassica napus HOM05D006900 ORTHO05D008651 2.1e-75 287.7 641 68.2
unitig_748.g8700 Utricularia gibba HOM05D006900 ORTHO05D008651 3.6e-75 287.0 564 71.8
Cc03_g00870 Coffea canephora HOM05D006900 ORTHO05D008651 4.7e-75 286.6 648 68.7
PSO170G0176 Papaver somniferum HOM05D006900 ORTHO05D008651 1.4e-74 285.0 671 65.6
PSO357G0537 Papaver somniferum HOM05D006900 ORTHO05D008651 1.4e-74 285.0 658 66.0
Psat0s740g0280 Pisum sativum HOM05D006900 ORTHO05D008651 1.4e-74 285.0 553 74.0
C05p49400 Brassica napus HOM05D006900 ORTHO05D008651 3.1e-74 283.9 637 68.1
Aqoxy5G02843 Aquilegia oxysepala HOM05D006900 ORTHO05D008651 1.5e-73 281.6 520 78.3
BcaC05g28835 Brassica carinata HOM05D006900 ORTHO05D008651 2.6e-73 280.8 639 68.5
BolC5t33686H Brassica oleracea HOM05D006900 ORTHO05D008651 2.6e-73 280.8 639 68.5
Sed0008833 Sechium edule HOM05D006900 ORTHO05D008651 9.8e-73 278.9 571 73.2
BcaB06g25797 Brassica carinata HOM05D006900 ORTHO05D008651 2.9e-72 277.3 623 68.9
Rhsim02G0004000 Rhododendron simsii HOM05D006900 ORTHO05D008651 1.4e-71 275.0 678 42.5
Phvul.003G114100 Phaseolus vulgaris HOM05D006900 ORTHO05D008651 1.9e-71 274.6 630 67.3
CDE12G0762 Ceratophyllum demersum HOM05D006900 ORTHO05D008651 7.1e-71 272.7 648 66.7
ATR0693G010 Amborella trichopoda HOM05D006900 ORTHO05D008651 3.5e-70 270.4 618 67.8
Zm00001eb014810 Zea mays HOM05D006900 ORTHO05D008651 5.1e-69 266.5 519 77.5
Sc15g0003210 Simmondsia chinensis HOM05D006900 ORTHO05D008651 8.6e-69 265.8 591 70.4
vmacro15184 Vaccinium macrocarpon HOM05D006900 ORTHO05D008651 8.6e-69 265.8 653 66.2
EL10Ac3g05503 Beta vulgaris HOM05D006900 ORTHO05D008651 4.3e-68 263.5 550 38.7
TPR.G16830 Trifolium pratense HOM05D006900 ORTHO05D008651 3.4e-65 253.8 648 55.1
Ca_21442_v3 Cicer arietinum L. HOM05D006900 ORTHO05D008651 4.9e-64 250.0 262 56.9
Hma1.2p1_0013F.1_g008580 Hydrangea macrophylla HOM05D006900 ORTHO05D008651 2.4e-58 231.1 216 58.8
Hund03124 Selenicereus undatus HOM05D006900 ORTHO05D008651 5.2e-58 229.9 668 57.5
CANSAT78G0722 Cannabis sativa HOM05D006900 ORTHO05D008651 7.6e-57 226.1 251 57.4
AT3G17040 Arabidopsis thaliana HOM05D006900 ORTHO05D008651 1.7e-56 224.9 259 51.7
SalBow8G4068 Salvia bowleyana HOM05D006900 ORTHO05D008651 4.9e-56 223.4 223 60.1
DCAR_030472 Daucus carota HOM05D006900 ORTHO05D008651 1.1e-55 222.2 619 61.9
CDE01G0483 Ceratophyllum demersum HOM05D006900 ORTHO05D008651 7.8e-54 216.1 257 50.6
Os03g0308800 Oryza sativa ssp. japonica HOM05D006900 ORTHO05D008651 7.6e-49 199.5 159 59.7
SEGI_12330 Sequoiadendron giganteum HOM05D006900 ORTHO05D008651 1.4e-42 178.7 485 74.6
AagrBONN_evm.TU.Sc2ySwM_368.516 Anthoceros agrestis HOM05D006900 ORTHO05D008651 5.6e-36 156.8 140 54.3
Cpa.g.sc9.62 Carica papaya HOM05D006900 ORTHO05D008651 1.3e-35 155.6 185 60.0
Mapoly0078s0010 Marchantia polymorpha HOM05D006900 ORTHO05D008651 9.0e-34 149.4 113 59.3
CBR_g12177 Chara braunii HOM05D006900 ORTHO05D008651 2.1e-30 138.3 114 58.8
SMO115G0152 Selaginella moellendorffii HOM05D006900 ORTHO05D008651 1.0e-29 136.0 110 59.1
Pp3c1_20310 Physcomitrium patens HOM05D006900 ORTHO05D008651 8.7e-29 132.9 122 54.1
Gohir.A10G171900 Gossypium hirsutum HOM05D006900 ORTHO05D008651 6.3e-27 126.7 131 53.4
CSS0028196 Camellia sinensis var. sinensis HOM05D006900 ORTHO05D008651 3.1e-26 124.4 80 76.2
CSS0035140 Camellia sinensis var. sinensis HOM05D006900 ORTHO05D008651 3.4e-25 120.9 80 73.8
Gohir.A10G171950 Gossypium hirsutum HOM05D006900 ORTHO05D008651 3.4e-25 120.9 92 64.1
Cpa.g.sc9.61 Carica papaya HOM05D006900 ORTHO05D008651 1.6e-19 102.1 174 45.4
Cre09.g416200 Chlamydomonas reinhardtii HOM05D006900 ORTHO05D008651 4.8e-19 100.5 206 34.5
MCO01G208 Micromonas commoda HOM05D006900 ORTHO05D008651 4.5e-17 94.0 121 38.8
SGA_v2.0_scaffold157G37400 Striga asiatica HOM05D006900 ORTHO05D008651 6.5e-16 90.1 239 35.6
Oeu032012.1 Olea europaea HOM05D006900 ORTHO05D008651 1.1e-15 89.4 93 51.6
Oeu032144.1 Olea europaea HOM05D006900 ORTHO05D008651 1.1e-12 79.3 70 94.3
PRCOL_00006040 Prasinoderma coloniale HOM05D001216 ORTHO05D005688 1.4e-10 72.4 112 35.7


User provided reference genes

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