Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT64G0633 Cannabis sativa HOM05D004503 ORTHO05D005460 0.0e+00 1682.2 842 100.0
Prupe.3G176600 Prunus persica HOM05D004503 ORTHO05D005460 0.0e+00 1507.3 845 87.6
MD17G1136200 Malus domestica HOM05D004503 ORTHO05D005460 0.0e+00 1505.3 837 87.9
Medtr3g046640 Medicago truncatula HOM05D004503 ORTHO05D005460 0.0e+00 1497.3 844 87.2
Lalb_Chr07g0191281 Lupinus albus HOM05D004503 ORTHO05D005460 0.0e+00 1494.6 838 87.2
Medtr0071s0030 Medicago truncatula HOM05D004503 ORTHO05D005460 0.0e+00 1494.6 844 87.1
Glyma.08G307900 Glycine max HOM05D004503 ORTHO05D005460 0.0e+00 1488.0 838 86.5
Ca_14599_v3 Cicer arietinum L. HOM05D004503 ORTHO05D005460 0.0e+00 1487.6 844 86.8
TAR629G1355 Trochodendron aralioides HOM05D004503 ORTHO05D005460 0.0e+00 1487.2 845 87.7
VMungo0647G0468 Vigna mungo HOM05D004503 ORTHO05D005460 0.0e+00 1486.9 838 87.1
Glyma.18G109800 Glycine max HOM05D004503 ORTHO05D005460 0.0e+00 1486.1 838 86.8
GSVIVG01020844001 Vitis vinifera HOM05D004503 ORTHO05D005460 0.0e+00 1484.9 842 87.6
arahy.Tifrunner.gnm1.ann1.S01VYL Arachis hypogaea HOM05D004503 ORTHO05D005460 0.0e+00 1484.5 839 86.9
Psat5g185680 Pisum sativum HOM05D004503 ORTHO05D005460 0.0e+00 1483.8 844 86.6
Lj6g0014906 Lotus japonicus HOM05D004503 ORTHO05D005460 0.0e+00 1483.4 842 86.3
Phvul.006G022400 Phaseolus vulgaris HOM05D004503 ORTHO05D005460 0.0e+00 1481.8 838 86.6
MELO3C026971.2 Cucumis melo HOM05D004503 ORTHO05D005460 0.0e+00 1481.1 845 85.7
arahy.Tifrunner.gnm1.ann1.96CX7H Arachis hypogaea HOM05D004503 ORTHO05D005460 0.0e+00 1478.4 839 86.5
CsaV3_4G031940 Cucumis sativus L. HOM05D004503 ORTHO05D005460 0.0e+00 1474.1 845 85.2
RcHm_v2.0_Chr2g0152001 Rosa chinensis HOM05D004503 ORTHO05D005460 0.0e+00 1471.4 858 83.4
Sed0003027 Sechium edule HOM05D004503 ORTHO05D005460 0.0e+00 1459.5 845 84.7
FAN05G2445 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1459.1 858 83.0
PGR042G1526 Punica granatum HOM05D004503 ORTHO05D005460 0.0e+00 1459.1 847 85.5
Dinv07955 Davidia involucrata HOM05D004503 ORTHO05D005460 0.0e+00 1454.5 838 85.8
Thecc.01G170000 Theobroma cacao HOM05D004503 ORTHO05D005460 0.0e+00 1454.5 846 85.2
FvH4_6g38590 Fragaria vesca HOM05D004503 ORTHO05D005460 0.0e+00 1454.1 858 82.9
FAN14G5858 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1449.9 858 82.6
Gorai.001G211500 Gossypium raimondii HOM05D004503 ORTHO05D005460 0.0e+00 1447.2 839 84.6
ClCG11G016490 Citrullus lanatus HOM05D004503 ORTHO05D005460 0.0e+00 1446.8 845 84.0
Lj1C677T5 Lonicera japonica HOM05D004503 ORTHO05D005460 0.0e+00 1445.6 842 84.7
Gohir.A07G183000 Gossypium hirsutum HOM05D004503 ORTHO05D005460 0.0e+00 1441.0 846 84.3
Actinidia12541 Actinidia chinensis HOM05D004503 ORTHO05D005460 0.0e+00 1440.2 848 84.2
TWI14G0297 Tripterygium wilfordii HOM05D004503 ORTHO05D005460 0.0e+00 1438.3 850 83.6
COL.COLO4_08894 Corchorus olitorius HOM05D004503 ORTHO05D005460 0.0e+00 1428.3 863 81.9
FAN02G3131 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1427.9 917 77.4
CiPaw.13G152400 Carya illinoinensis HOM05D004503 ORTHO05D005460 0.0e+00 1425.2 849 84.6
FAN09G1308 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1420.2 917 76.9
Atru.chr6.2055 Acer truncatum HOM05D004503 ORTHO05D005460 0.0e+00 1419.1 846 83.2
Sopen07g029580 Solanum pennellii HOM05D004503 ORTHO05D005460 0.0e+00 1416.7 840 83.1
Duzib138G1342 Durio zibethinus HOM05D004503 ORTHO05D005460 0.0e+00 1415.6 846 83.1
Solyc07g056220.3 Solanum lycopersicum HOM05D004503 ORTHO05D005460 0.0e+00 1415.6 840 83.1
Ciclev10030701m.g Citrus clementina HOM05D004503 ORTHO05D005460 0.0e+00 1412.9 845 82.5
vmacro08730 Vaccinium macrocarpon HOM05D004503 ORTHO05D005460 0.0e+00 1403.3 920 77.5
Peaxi162Scf00111g00222 Petunia axillaris HOM05D004503 ORTHO05D005460 0.0e+00 1398.6 904 77.4
Potri.005G204400 Populus trichocarpa HOM05D004503 ORTHO05D005460 0.0e+00 1397.5 847 81.3
Nitab4.5_0002251g0070 Nicotiana tabacum HOM05D004503 ORTHO05D005460 0.0e+00 1396.7 841 82.2
CAN.G585.22 Capsicum annuum HOM05D004503 ORTHO05D005460 0.0e+00 1394.4 840 82.3
THA.LOC104826541 Tarenaya hassleriana HOM05D004503 ORTHO05D005460 0.0e+00 1387.5 855 80.0
EL10Ac1g01630 Beta vulgaris HOM05D004503 ORTHO05D005460 0.0e+00 1386.7 846 79.9
Cc05_g09730 Coffea canephora HOM05D004503 ORTHO05D005460 0.0e+00 1386.3 845 81.1
Nn4g24335 Nelumbo nucifera HOM05D004503 ORTHO05D005460 0.0e+00 1384.4 838 81.5
Sabra05G0155000 Salix brachista HOM05D004503 ORTHO05D005460 0.0e+00 1382.1 890 77.5
Sc09g0009430 Simmondsia chinensis HOM05D004503 ORTHO05D005460 0.0e+00 1382.1 846 80.3
QL01p017640 Quercus lobata HOM05D004503 ORTHO05D005460 0.0e+00 1379.8 904 78.0
MSTRG.6739 Avicennia marina HOM05D004503 ORTHO05D005460 0.0e+00 1379.0 845 81.7
Migut.M00558 Erythranthe guttata HOM05D004503 ORTHO05D005460 0.0e+00 1378.6 845 80.7
Potri.002G057800 Populus trichocarpa HOM05D004503 ORTHO05D005460 0.0e+00 1378.2 847 80.8
Cpa.g.sc648.4 Carica papaya HOM05D004503 ORTHO05D005460 0.0e+00 1372.1 851 80.5
Manes.02G088300 Manihot esculenta HOM05D004503 ORTHO05D005460 0.0e+00 1371.3 851 81.4
CSS0024997 Camellia sinensis var. sinensis HOM05D004503 ORTHO05D005460 0.0e+00 1370.9 860 80.7
SGA_v2.0_scaffold70G23615 Striga asiatica HOM05D004503 ORTHO05D005460 0.0e+00 1369.4 868 78.6
HanXRQChr13g0387771 Helianthus annuus HOM05D004503 ORTHO05D005460 0.0e+00 1369.0 845 80.5
Lsat_1_v5_gn_8_31680 Lactuca sativa HOM05D004503 ORTHO05D005460 0.0e+00 1367.8 838 80.3
Rhsim12G0009900 Rhododendron simsii HOM05D004503 ORTHO05D005460 0.0e+00 1363.6 868 79.3
AUR62026613 Chenopodium quinoa HOM05D004503 ORTHO05D005460 0.0e+00 1362.4 845 79.4
PSO675G5402 Papaver somniferum HOM05D004503 ORTHO05D005460 0.0e+00 1357.0 842 79.2
Aqoxy1G01732 Aquilegia oxysepala HOM05D004503 ORTHO05D005460 0.0e+00 1355.9 843 78.8
AUR62034921 Chenopodium quinoa HOM05D004503 ORTHO05D005460 0.0e+00 1354.0 845 78.9
Aa31LG5G23690 Aethionema arabicum HOM05D004503 ORTHO05D005460 0.0e+00 1353.6 855 78.1
ECA233G4498 Erigeron canadensis HOM05D004503 ORTHO05D005460 0.0e+00 1342.0 848 79.4
Hund26670 Selenicereus undatus HOM05D004503 ORTHO05D005460 0.0e+00 1333.2 947 71.6
Thhalv10016232m.g Eutrema salsugineum HOM05D004503 ORTHO05D005460 0.0e+00 1327.0 856 77.1
BcaC01g05572 Brassica carinata HOM05D004503 ORTHO05D005460 0.0e+00 1326.2 856 77.2
A03p21010 Brassica napus HOM05D004503 ORTHO05D005460 0.0e+00 1326.2 856 77.2
C03p24750 Brassica napus HOM05D004503 ORTHO05D005460 0.0e+00 1326.2 856 77.2
BolC3t14864H Brassica oleracea HOM05D004503 ORTHO05D005460 0.0e+00 1326.2 856 77.2
BraA03t11340Z Brassica rapa HOM05D004503 ORTHO05D005460 0.0e+00 1326.2 856 77.2
Sp4g20340 Schrenkiella parvula HOM05D004503 ORTHO05D005460 0.0e+00 1326.2 856 77.1
HPP92_024264 Vanilla planifolia HOM05D004503 ORTHO05D005460 0.0e+00 1325.5 838 77.2
Carub.0004s1999 Capsella rubella HOM05D004503 ORTHO05D005460 0.0e+00 1319.7 856 76.5
AL4G35000 Arabidopsis lyrata HOM05D004503 ORTHO05D005460 0.0e+00 1316.2 856 76.8
CARHR132590 Cardamine hirsuta HOM05D004503 ORTHO05D005460 0.0e+00 1316.2 856 76.4
AT2G38020 Arabidopsis thaliana HOM05D004503 ORTHO05D005460 0.0e+00 1313.1 855 76.7
Gohir.D07G189800 Gossypium hirsutum HOM05D004503 ORTHO05D005460 0.0e+00 1301.2 763 84.3
HanXRQChr13g0403751 Helianthus annuus HOM05D004503 ORTHO05D005460 0.0e+00 1295.0 788 80.6
SEGI_01586 Sequoiadendron giganteum HOM05D004503 ORTHO05D005460 0.0e+00 1286.2 838 74.3
ATR0772G123 Amborella trichopoda HOM05D004503 ORTHO05D005460 0.0e+00 1280.0 853 73.5
HPP92_024256 Vanilla planifolia HOM05D004503 ORTHO05D005460 0.0e+00 1267.7 838 74.6
Eucgr.A02017 Eucalyptus grandis HOM05D004503 ORTHO05D005460 0.0e+00 1237.2 727 82.9
DCAR_013322 Daucus carota HOM05D004503 ORTHO05D005460 0.0e+00 1161.7 837 71.8
Ah.05g168350 Amaranthus hybridus HOM05D004503 ORTHO05D005460 0.0e+00 1160.6 845 70.1
Cfa009838 Carpinus fangiana HOM05D004503 ORTHO05D005460 0.0e+00 1097.0 852 69.5
Mapoly0052s0038 Marchantia polymorpha HOM05D004503 ORTHO05D005460 0.0e+00 1093.6 840 62.4
Pp3c13_19740 Physcomitrium patens HOM05D004503 ORTHO05D005460 0.0e+00 1089.7 840 62.7
Haze_23205 Corylus avellana HOM05D004503 ORTHO05D005460 0.0e+00 1075.1 1142 55.3
Os01g0666800 Oryza sativa ssp. japonica HOM05D004503 ORTHO05D005460 2.8e-309 1065.1 879 63.4
SMO358G0621 Selaginella moellendorffii HOM05D004503 ORTHO05D005460 2.4e-300 1035.4 839 59.5
MBI10_g21107_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 4.0e-295 1018.1 852 66.0
BcaB01g03734 Brassica carinata HOM05D004503 ORTHO05D005460 9.8e-286 986.9 687 74.2
BcaNung06337 Brassica carinata HOM05D004503 ORTHO05D005460 2.4e-284 982.2 796 64.9
PSO063G7036 Papaver somniferum HOM05D004503 ORTHO05D005460 4.2e-281 971.5 625 76.2
vmacro23147 Vaccinium macrocarpon HOM05D004503 ORTHO05D005460 5.6e-265 917.9 729 67.5
SHI12362 Sapria himalayana HOM05D004503 ORTHO05D005460 6.6e-250 867.8 603 71.6
BcaC01g05574 Brassica carinata HOM05D004503 ORTHO05D005460 2.4e-228 796.2 676 63.2
Nitab4.5_0027860g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 1.7e-213 746.9 475 77.1
Oeu020048.5 Olea europaea HOM05D004503 ORTHO05D005460 2.6e-206 723.0 464 80.2
CDE04G0954 Ceratophyllum demersum HOM05D004503 ORTHO05D005460 6.7e-202 708.4 433 82.4
MBI10_g05864_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 1.8e-199 700.3 604 62.6
PGSC0003DMG400017305 Solanum tuberosum HOM05D004503 ORTHO05D005460 3.3e-193 679.5 408 79.4
CBR_g46726 Chara braunii HOM05D004503 ORTHO05D005460 7.2e-180 635.2 849 41.7
TPR.G25270 Trifolium pratense HOM05D004503 ORTHO05D005460 1.7e-173 614.0 337 90.5
Nitab4.5_0010124g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 8.5e-173 611.7 362 85.1
Oeu010987.1 Olea europaea HOM05D004503 ORTHO05D005460 4.7e-163 579.3 359 77.2
PRCOL_00002554 Prasinoderma coloniale HOM05D004503 ORTHO05D005460 1.5e-156 557.8 859 38.5
Cfa025981 Carpinus fangiana HOM05D004503 ORTHO05D005460 2.8e-139 500.4 828 35.6
TPR.G16790 Trifolium pratense HOM05D004503 ORTHO05D005460 1.3e-133 481.5 434 59.0
BcaB02g09224 Brassica carinata HOM05D004503 ORTHO05D005460 1.3e-123 448.4 596 47.5
Cre03.g199311 Chlamydomonas reinhardtii HOM05D004503 ORTHO05D005460 9.0e-122 442.2 1001 31.5
AagrBONN_evm.TU.Sc2ySwM_368.858 Anthoceros agrestis HOM05D004503 ORTHO05D005460 2.1e-118 431.0 330 60.0
AL3G43330 Arabidopsis lyrata HOM05D004503 ORTHO05D005460 7.4e-116 422.5 367 63.2
MBI10_g02225_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 9.3e-103 379.0 263 70.7
AagrBONN_evm.TU.Sc2ySwM_368.859 Anthoceros agrestis HOM05D004503 ORTHO05D005460 3.7e-99 367.1 329 55.6
Actinidia25072 Actinidia chinensis HOM05D004503 ORTHO05D005460 1.6e-86 325.1 240 68.3
Sabra02G0047100 Salix brachista HOM05D004503 ORTHO05D005460 2.2e-80 304.7 218 69.7
PGR042G2164 Punica granatum HOM05D004503 ORTHO05D005460 3.6e-78 297.4 165 86.7
AagrBONN_evm.TU.Sc2ySwM_117.438 Anthoceros agrestis HOM05D004503 ORTHO05D005460 8.8e-77 292.7 317 49.5
BcaB01g03733 Brassica carinata HOM05D004503 ORTHO05D005460 1.1e-76 292.4 157 84.1
TPR.G20801 Trifolium pratense HOM05D004503 ORTHO05D005460 8.9e-45 186.4 97 89.7
Lsat_1_v5_gn_2_4101 Lactuca sativa HOM05D004503 ORTHO05D005460 2.8e-38 164.9 97 81.4
Lsat_1_v5_gn_8_146460 Lactuca sativa HOM05D004503 ORTHO05D005460 3.4e-36 157.9 101 74.3
Lsat_1_v5_gn_3_97321 Lactuca sativa HOM05D004503 ORTHO05D005460 1.3e-32 146.0 98 74.5
Lsat_1_v5_gn_9_81860 Lactuca sativa HOM05D004503 ORTHO05D005460 2.3e-32 145.2 94 75.5
Lsat_1_v5_gn_9_107141 Lactuca sativa HOM05D004503 ORTHO05D005460 3.0e-32 144.8 85 82.4
Lsat_1_v5_gn_4_94880 Lactuca sativa HOM05D001336 ORTHO05D001211 1.6e-30 139.0 87 77.0
Lsat_1_v5_gn_1_120320 Lactuca sativa HOM05D004503 ORTHO05D005460 2.8e-30 138.3 94 71.3
TPR.G6024 Trifolium pratense HOM05D004503 ORTHO05D005460 8.1e-30 136.7 67 94.0
FvH4_6g38010 Fragaria vesca HOM05D004503 ORTHO05D005460 2.3e-29 135.2 168 50.6
Lsat_1_v5_gn_9_102961 Lactuca sativa HOM05D004503 ORTHO05D005460 6.8e-29 133.7 91 71.4
Lsat_1_v5_gn_5_109060 Lactuca sativa HOM05D004503 ORTHO05D005460 2.6e-28 131.7 99 69.7
Nitab4.5_0010753g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 2.6e-28 131.7 191 48.2
Nitab4.5_0010753g0030 Nicotiana tabacum HOM05D004503 ORTHO05D005460 3.4e-28 131.3 119 56.3
MBI10_g02227_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 2.4e-26 125.2 125 59.2
Lsat_1_v5_gn_6_107780 Lactuca sativa HOM05D004503 ORTHO05D003526 1.2e-25 122.9 96 67.7
Lsat_1_v5_gn_2_120 Lactuca sativa HOM05D003203 ORTHO05D003526 7.8e-25 120.2 108 59.3
Lsat_1_v5_gn_0_13460 Lactuca sativa HOM05D003536 ORTHO05D004233 3.0e-24 118.2 100 63.0
Lsat_1_v5_gn_1_93381 Lactuca sativa HOM05D003203 ORTHO05D003526 3.0e-24 118.2 103 64.1
Lsat_1_v5_gn_2_105761 Lactuca sativa HOM05D001000 ORTHO05D001896 2.5e-23 115.2 64 81.2
Lsat_1_v5_gn_8_98160 Lactuca sativa HOM05D004503 ORTHO05D005460 4.7e-22 110.9 96 62.5
Lsat_1_v5_gn_4_100901 Lactuca sativa HOM05D004503 ORTHO05D005460 6.2e-22 110.5 68 73.5
Lsat_1_v5_gn_2_36800 Lactuca sativa HOM05D004503 ORTHO05D005460 5.8e-20 104.0 61 75.4
Lsat_1_v5_gn_2_51260 Lactuca sativa HOM05D001336 ORTHO05D001211 2.7e-17 95.1 52 84.6
Lsat_1_v5_gn_8_75300 Lactuca sativa HOM05D004503 ORTHO05D005460 2.7e-17 95.1 115 47.8
Lsat_1_v5_gn_8_13240 Lactuca sativa HOM05D004503 ORTHO05D005460 3.5e-17 94.7 82 63.4
Lsat_1_v5_gn_8_84700 Lactuca sativa HOM05D004503 ORTHO05D005460 7.8e-17 93.6 52 82.7
TPR.G24652 Trifolium pratense HOM05D004503 ORTHO05D005460 1.6e-14 85.9 48 91.7
SalBow8G3309 Salvia bowleyana HOM05D004503 ORTHO05D005460 3.1e-13 81.6 50 80.0
C04p09630 Brassica napus HOM05D004503 ORTHO05D005460 4.0e-13 81.3 87 52.9
BolC4t22570H Brassica oleracea HOM05D004503 ORTHO05D005460 4.0e-13 81.3 87 52.9
Lsat_1_v5_gn_4_85140 Lactuca sativa HOM05D003203 ORTHO05D003526 4.9e-11 74.3 37 94.6
Lsat_1_v5_gn_5_27580 Lactuca sativa HOM05D005974 ORTHO05D007201 4.9e-11 74.3 200 30.0
Lsat_1_v5_gn_8_136521 Lactuca sativa HOM05D004503 ORTHO05D000404 1.1e-10 73.2 79 51.9
Rhsim08G0005700 Rhododendron simsii HOM05D004503 ORTHO05D037450 3.5e-09 68.2 88 51.1
Lsat_1_v5_gn_5_118461 Lactuca sativa HOM05D001336 ORTHO05D001211 5.1e-08 64.3 41 75.6
MBI10_g02226_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 4.3e-07 61.2 37 81.1
Psat0s1135g0040 Pisum sativum HOM05D002140 ORTHO05D019229 4.8e-06 57.8 31 87.1


User provided reference genes

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